View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_high_19 (Length: 291)
Name: NF20484_high_19
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 35036681 - 35036415
Alignment:
| Q |
1 |
cttcaagtgtttcaaagttgatagggtcataattttgcttcttattcctataaatcattataacaagaccc-ataatagtaatacctattttgtagcctc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35036681 |
cttcaagtgtttcaaagttgatagggtcataattttgcttcttattcctataaatcattataacaagaccccataatagtaatacctattttgtagcctc |
35036582 |
T |
|
| Q |
100 |
aaattgtaacgacacaaggtgtgttattgcgtgatcaacaaaaaatgttctgagcaccataactcaagagaaatagccaaagcttttaagaaaatgctat |
199 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35036581 |
aaattgtaacgacacaaggtgtgttatagcgtgatcaacaaaaaatgttctgagcaccataactcaagagaaatagccaaagcttttaagaaaatgctat |
35036482 |
T |
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| Q |
200 |
atggaaaagagagaaaatg--gtgagtacaagtttgtagaatctattcacaaccatgatagaatacg |
264 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35036481 |
atggaaaagagagaaaatggtgtgagtacaagtttgtagaatctattcacaaccatgatagaatacg |
35036415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20655313 - 20655251
Alignment:
| Q |
1 |
cttcaagtgtttcaaagttgatagggtcataattttgcttcttattcctataaatcattataa |
63 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20655313 |
cttcaagtgtttcaaaattgatagggtcataattttgcttcttattcctataaattattataa |
20655251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12037642 - 12037704
Alignment:
| Q |
1 |
cttcaagtgtttcaaagttgatagggtcataattttgcttcttattcctataaatcattataa |
63 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
12037642 |
cttcaagtgtttcaaaattgataaggtcataattttgcttcttattcctataaattattataa |
12037704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 26400752 - 26400811
Alignment:
| Q |
5 |
aagtgtttcaaagttgatagggtcataattttgctt-cttattcctataaatcattataa |
63 |
Q |
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|||| |||||||||||||| ||| ||||||||| || ||||||||||||||||||||||| |
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| T |
26400752 |
aagtatttcaaagttgataaggttataattttgtttacttattcctataaatcattataa |
26400811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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