View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_high_22 (Length: 280)
Name: NF20484_high_22
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 54115789 - 54115543
Alignment:
| Q |
16 |
atgagacatgagcacttaagataattatatcatttattaacttcccctaactgaacacagagaattgtcaatcgtatcgaacattgattccttacacaga |
115 |
Q |
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| T |
54115789 |
atgagacatgagcacttaagataattatatcatttattaacttcccctaactgaacacagagaattgtcaatcgtatcgaacatggattccttacacaga |
54115690 |
T |
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| Q |
116 |
tttcttcatgtgcaatgtacatgttctcaaaaactagtttaatacaaaagggaattacctagttagtgagtattcatagaagttaagattaatacctatg |
215 |
Q |
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| T |
54115689 |
tttcttcatgtgcaatgtacatgttctcaaaaactagtttaatacaaaagggaattacctagttagtgagtattcatagaagttaagattaatacctatg |
54115590 |
T |
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| Q |
216 |
tcaggactctgaaggtacatatccttgacccgatgaggtgataaact |
262 |
Q |
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| T |
54115589 |
tcaggactctgaaggtacatatccttgacccgatgaggtgataaact |
54115543 |
T |
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