View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20484_high_26 (Length: 242)

Name: NF20484_high_26
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20484_high_26
NF20484_high_26
[»] chr6 (2 HSPs)
chr6 (1-222)||(4899585-4899800)
chr6 (30-76)||(6728572-6728618)
[»] chr7 (3 HSPs)
chr7 (30-81)||(35035091-35035142)
chr7 (12-147)||(5473200-5473335)
chr7 (50-132)||(33804224-33804306)
[»] chr1 (2 HSPs)
chr1 (16-75)||(30602336-30602395)
chr1 (11-75)||(28843455-28843519)
[»] scaffold0557 (2 HSPs)
scaffold0557 (40-132)||(4575-4667)
scaffold0557 (43-152)||(4018-4127)
[»] chr4 (11 HSPs)
chr4 (51-147)||(2346313-2346409)
chr4 (12-75)||(1460392-1460455)
chr4 (33-132)||(23564434-23564533)
chr4 (52-111)||(23566635-23566694)
chr4 (65-176)||(55240475-55240586)
chr4 (14-71)||(23564353-23564410)
chr4 (40-113)||(36165341-36165414)
chr4 (40-129)||(36165559-36165648)
chr4 (40-81)||(41389519-41389560)
chr4 (37-81)||(36165209-36165253)
chr4 (40-76)||(53090092-53090128)
[»] chr8 (1 HSPs)
chr8 (40-131)||(42160312-42160403)
[»] chr5 (1 HSPs)
chr5 (21-81)||(42193330-42193390)
[»] chr2 (2 HSPs)
chr2 (33-73)||(36201865-36201905)
chr2 (21-75)||(30725392-30725446)
[»] scaffold0442 (1 HSPs)
scaffold0442 (50-152)||(7764-7866)
[»] chr3 (1 HSPs)
chr3 (32-81)||(20982791-20982840)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4899585 - 4899800
Alignment:
Q  1 cattcaatcatccgaaaacttgagtaatatgagacaaataacaaattataaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtc 100  Q
    ||||||| | ||||||||||||||||||||||||||| || |||||    ||||| ||  ||| ||||||||| |||||||||||||  |||| | ||||    
T  4899585 cattcaaccgtccgaaaacttgagtaatatgagacaatta-caaat----aacaaattacaaa-caacttcaaaatccaccattacgtctagcgtaggtc 4899678  T
Q  101 tcagtccaattcttacattgcaatctttaacccaactttgataccatataaacggggcttgagtctcatccaaaaacctagttcatgaggtatatcattt 200  Q
    || ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4899679 tctgtccaattcttacattgcagtctttaacccagctttgataccatataaacggtgcttgagtctcatccaaaaacctagttcatgaggtatatcattt 4899778  T
Q  201 gaaatacatagtatatatgaca 222  Q
    ||||||||||||||||||||||    
T  4899779 gaaatacatagtatatatgaca 4899800  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 6728618 - 6728572
Alignment:
Q  30 tgagacaaataacaaattataaacaacttcaaaatcaacttcaacat 76  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||    
T  6728618 tgagacaaataacaaactataaacaactttaaaaccaacttcaacat 6728572  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 35035091 - 35035142
Alignment:
Q  30 tgagacaaataacaaattataaacaacttcaaaatcaacttcaacatccacc 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35035091 tgagacaaataacaaattataaacaacttcaaaatcaacttcaacacccacc 35035142  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 5473335 - 5473200
Alignment:
Q  12 ccgaaaacttgagtaatatgagacaaataacaaattataaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaatt 111  Q
    |||| |||||||| |||||   |||||||||||| || |||||||||||||| ||||||||||| ||||| | ||||| | | ||| |||  ||| ||||    
T  5473335 ccgagaacttgagcaatatataacaaataacaaactacaaacaacttcaaaaccaacttcaacacccaccttcacgctcaacgtggatctgggtctaatt 5473236  T
Q  112 cttacattgcaatctttaacccaactttgataccat 147  Q
    | |||||| ||||| |||| || ||| |||||||||    
T  5473235 cctacattacaatccttaatccgactctgataccat 5473200  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 33804224 - 33804306
Alignment:
Q  50 aaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaattcttacattgcaatctttaacc 132  Q
    |||||||||||||| ||||| |||||  |||| | |||| |||| |||  || ||||||||| | ||||||||||||||||||    
T  33804224 aaacaacttcaaaaccaactccaacactcaccctcacgcatagcgtggacctaagtccaattttcacattgcaatctttaacc 33804306  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 30602395 - 30602336
Alignment:
Q  16 aaacttgagtaatatgagacaaataacaaattataaacaacttcaaaatcaacttcaaca 75  Q
    ||||||||||||| ||| |||||||||||| || |||||||||||||| |||||||||||    
T  30602395 aaacttgagtaatgtgaaacaaataacaaactacaaacaacttcaaaaccaacttcaaca 30602336  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 28843455 - 28843519
Alignment:
Q  11 tccgaaaacttgagtaatatgagacaaataacaaattataaacaacttcaaaatcaacttcaaca 75  Q
    ||||||||||||||  || ||| || || |||||| || ||||||||||||||||||||||||||    
T  28843455 tccgaaaacttgagcgatgtgaaactaaaaacaaactacaaacaacttcaaaatcaacttcaaca 28843519  T

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Target: scaffold0557 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 4667 - 4575
Alignment:
Q  40 aacaaattataaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaattcttacattgcaatctttaacc 132  Q
    |||||| || |||||||||||||| ||||||||||||| ||| | | ||||||| |||||||  |||||||||| || |||| ||| ||||||    
T  4667 aacaaactacaaacaacttcaaaaccaacttcaacatcaaccctcatgcttagcgtgggtctgggtccaattctcacgttgctatcattaacc 4575  T

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Target: scaffold0557; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 4018 - 4127
Alignment:
Q  43 aaattataaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaattcttacattgcaatctttaacccaactttgat 142  Q
    |||||| |||||||||||||| | | ||||||| ||||| | |||| ||||||| |  |  |||||||||| ||||| || |||||||||||||| | ||    
T  4018 aaattacaaacaacttcaaaacctatttcaacacccaccctcacgcctagcatgagcttgtgtccaattctcacatttcagtctttaacccaactctaat 4117  T
Q  143 accatataaa 152  Q
    ||||| ||||    
T  4118 accatgtaaa 4127  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 2346409 - 2346313
Alignment:
Q  51 aacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaattcttacattgcaatctttaacccaactttgataccat 147  Q
    |||||||||||||  |||||||||| ||||| | || | ||||||||||||  |||||||||  |||| |||||| |||||||  ||||||||||||    
T  2346409 aacaacttcaaaacaaacttcaacacccaccctcacacctagcatgggtctgggtccaattcccacatcgcaatccttaacccgcctttgataccat 2346313  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 1460455 - 1460392
Alignment:
Q  12 ccgaaaacttgagtaatatgagacaaataacaaattataaacaacttcaaaatcaacttcaaca 75  Q
    |||| ||| |||| ||| |||||||||||||||| || |||||||||||||| |||||| ||||    
T  1460455 ccgagaacctgagcaatgtgagacaaataacaaactacaaacaacttcaaaaccaacttgaaca 1460392  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 23564434 - 23564533
Alignment:
Q  33 gacaaataacaaattataaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaattcttacattgcaatctttaacc 132  Q
    ||||||||||||| || ||||||||||||||| |||||| ||| ||||| | |||| |||| |||| || ||||  ||||  |||||  |||||||||||    
T  23564434 gacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcctgagtctgattcccacattataatctttaacc 23564533  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 23566635 - 23566694
Alignment:
Q  52 acaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaatt 111  Q
    |||||||||||| ||||||||||||||||| | |||| |||| |||| || |||||||||    
T  23566635 acaacttcaaaaccaacttcaacatccaccctcacgcctagcgtgggcctgagtccaatt 23566694  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 55240586 - 55240475
Alignment:
Q  65 caacttcaacatccaccattacgcttagcatgggtctcagtccaattcttacattgcaatctttaacccaactttgataccatataaacggggcttgagt 164  Q
    ||||||||||||||||| | |||  ||||| | |  | |||||||||| |||||||||||||||||||| ||| | ||||||| | ||   ||||||| |    
T  55240586 caacttcaacatccaccctcacgtctagcaagagcttgagtccaattcctacattgcaatctttaacccgactctaataccatgttaaattggcttgaat 55240487  T
Q  165 ctcatccaaaaa 176  Q
    ||||||| ||||    
T  55240486 ctcatcccaaaa 55240475  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 23564353 - 23564410
Alignment:
Q  14 gaaaacttgagtaatatgagacaaataacaaattataaacaacttcaaaatcaacttc 71  Q
    |||||| |||| ||| || ||||||||||||| || ||||||||||||||| ||||||    
T  23564353 gaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttc 23564410  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 36165341 - 36165414
Alignment:
Q  40 aacaaattataaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaattct 113  Q
    |||||| || ||||||||| |||||||||||||||| ||||| | |||| |||| ||||  | |||||||||||    
T  36165341 aacaaactaaaaacaactttaaaatcaacttcaacacccaccctcacgcctagcgtgggcttgagtccaattct 36165414  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 36165559 - 36165648
Alignment:
Q  40 aacaaattataaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaattcttacattgcaatcttta 129  Q
    ||||||||| ||||||||||||||  |||||||||| ||||  ||| || |||| || | || |||| |||||  |||||||||||||||    
T  36165559 aacaaattacaaacaacttcaaaactaacttcaacacccactcttatgcctagcgtgagcctgagtctaattcccacattgcaatcttta 36165648  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 41389519 - 41389560
Alignment:
Q  40 aacaaattataaacaacttcaaaatcaacttcaacatccacc 81  Q
    |||||| || |||||||||||||| |||||||||||||||||    
T  41389519 aacaaaatacaaacaacttcaaaaccaacttcaacatccacc 41389560  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 36165209 - 36165253
Alignment:
Q  37 aataacaaattataaacaacttcaaaatcaacttcaacatccacc 81  Q
    ||||||||| || |||||| ||||||| |||||||||||||||||    
T  36165209 aataacaaactacaaacaatttcaaaaccaacttcaacatccacc 36165253  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 53090092 - 53090128
Alignment:
Q  40 aacaaattataaacaacttcaaaatcaacttcaacat 76  Q
    |||||| || |||||||||||||||||||||||||||    
T  53090092 aacaaactacaaacaacttcaaaatcaacttcaacat 53090128  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 42160403 - 42160312
Alignment:
Q  40 aacaaattataaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaattcttacattgcaatctttaac 131  Q
    |||||| |||||||||||| |||| ||||||||||| ||||| | ||||||| | ||||| | |||| |||||  ||||| |||||||||||    
T  42160403 aacaaactataaacaactttaaaaccaacttcaacacccaccctcacgcttatcgtgggtttgagtctaattcccacattacaatctttaac 42160312  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 42193330 - 42193390
Alignment:
Q  21 tgagtaatatgagacaaataacaaattataaacaacttcaaaatcaacttcaacatccacc 81  Q
    |||| ||| |||||||||||||||  || || ||||||||||||| |||||||||||||||    
T  42193330 tgagcaatgtgagacaaataacaatctacaagcaacttcaaaatcgacttcaacatccacc 42193390  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 36201905 - 36201865
Alignment:
Q  33 gacaaataacaaattataaacaacttcaaaatcaacttcaa 73  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  36201905 gacaaataacaaactataaacaacttcaaaaccaacttcaa 36201865  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 30725446 - 30725392
Alignment:
Q  21 tgagtaatatgagacaaataacaaattataaacaacttcaaaatcaacttcaaca 75  Q
    |||| |||||||||| || ||||||||||||||| | |||||| |||||||||||    
T  30725446 tgagcaatatgagactaacaacaaattataaacaccatcaaaaccaacttcaaca 30725392  T

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Target: scaffold0442 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 7764 - 7866
Alignment:
Q  50 aaacaacttcaaaatcaacttcaacatccaccattacgcttagcatgggtctcagtccaattcttacattgcaatctttaacccaactttgataccatat 149  Q
    |||||||||||||| | | ||||||| ||||| |  ||| ||||||| |  |  |||||||||| |||||||| |||||||||||||| | ||||||| |    
T  7764 aaacaacttcaaaacctatttcaacacccaccctcccgcctagcatgagcttgtgtccaattctcacattgcagtctttaacccaactataataccatgt 7863  T
Q  150 aaa 152  Q
    |||    
T  7864 aaa 7866  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 20982840 - 20982791
Alignment:
Q  32 agacaaataacaaattataaacaacttcaaaatcaacttcaacatccacc 81  Q
    |||||||||||||| || ||||||||| ||||  ||||||||||||||||    
T  20982840 agacaaataacaaactacaaacaactttaaaactaacttcaacatccacc 20982791  T

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