View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20484_high_8 (Length: 521)
Name: NF20484_high_8
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 506
Target Start/End: Original strand, 24523282 - 24523776
Alignment:
| Q |
11 |
cagagatactctaatgaatttagatgtctcatggctacacacaatcatgattcaacctgcatttgacctcgacttttcacaatatcaaggatcgcga-ta |
109 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24523282 |
cagagatactctaaagattttagatgtctcatggctacacacaatcatgattcaacctgcatttgacctcgacttttcacaatatcaaggatcgcgacta |
24523381 |
T |
|
| Q |
110 |
ggacaacgatttaaaactttgcttaggaatgtttacaaccttaactattattatatcaaaaagctttccaaatatggtcaaagttaggaagagtttttgg |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24523382 |
gg-caacgatttaaaactttgcttaggagtgtttacaaccttaactattatt-tatcaaaaagctttccaaatatggtcaaagttgggaagagtttttgg |
24523479 |
T |
|
| Q |
210 |
ttctcatgtactaataagaaataaacttatcatgaagcatttgagttgtagcataatgtcgtgaaaccattagatttaccacaacctggtggacaaaaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24523480 |
ttctcatgtactaataagaaataaacttatcatgaagcatatgagttgtagcataatgtcgtgaaaccattagttttaccacaacctggtggacaaaaag |
24523579 |
T |
|
| Q |
310 |
attctacaagaggaagtccacaatggttgaagaactcattgttttatgtgttgtcctaattaagtccaccaagtacttttgattctatatatgttatgtt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24523580 |
attctacaagaggaagtccacaatggttgaagaactcattgttttatgtgttgtcctaattaagtccaccaagtacttttgattctatatatgttatgtt |
24523679 |
T |
|
| Q |
410 |
agtcgacatttggttatgtggatctgatgtggagaatattaatagtgaagaagaagaactttaatgggtggaatgatgaatgatcaaagtgaagaat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24523680 |
agtcgacatttggttatgtggatctgatgtggagaatattaatagtgaagaagaggaactttaatgggtggaatgatgaatgatcaaagtgaagaat |
24523776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University