View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_high_9 (Length: 499)
Name: NF20484_high_9
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 3413663 - 3414129
Alignment:
| Q |
15 |
gaacaacattgatggaaataggttaagagagcgtttgaatggacggccgtctaaatggaaggaataaaagcaaccgcaatagggtgacacagtggtgcaa |
114 |
Q |
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| T |
3413663 |
gaacaacattgatggaaataggttaagagagcgtttgaatggacgaccgtcgaaatggaaggaataaaagcaaccgcaataggatgacacagtggtgcaa |
3413762 |
T |
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| Q |
115 |
aagacggtatagtcgcaccacaacccaatgaggttatatcctgaactagatatttggattttagggtagataagtacaatggagggtgaaggttagagag |
214 |
Q |
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| T |
3413763 |
aagacggtatagtcgcaccacaacccaatgaggctatatcctgaactagatatttggattttagggtagataagtacaatggaggatgaaggttagagag |
3413862 |
T |
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| Q |
215 |
aggctagataaatatttggtttagagagttatacaaagtagtatgttgattctaaaatgcttgatttaccatgaaggagtattaagagatatatgtttaa |
314 |
Q |
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| T |
3413863 |
aggctagataaatatttggtttagagagttatacaaagtagta---tgattctaaaatgcttgatttaacatgaaggagtattgagagatatatgtttaa |
3413959 |
T |
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| Q |
315 |
tttagctcaaactagtctnnnnnnncctagtttaaatagaccctttcaagtttttcagacagaaacatgccaagaacgcgagtgtggcggcgattcaaac |
414 |
Q |
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| T |
3413960 |
tttagctcaaactagtccaaaaaaacctagttgaaatagaccctttcaggtttttgagaccgaaacatgccaagaacgcgagtgtggcggcgattcaaac |
3414059 |
T |
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| Q |
415 |
acaccaacgaccaacccataacaatccacaccaatcaatatgacgcatgaagccacacccagaaagctaa |
484 |
Q |
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| T |
3414060 |
acaccaacgaccaacccataacaatccacaccaatcaatatgacgcatgaagccataaccagaaagctaa |
3414129 |
T |
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