View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20484_low_1 (Length: 721)
Name: NF20484_low_1
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_1 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 19 - 721
Target Start/End: Original strand, 12609887 - 12610595
Alignment:
| Q |
19 |
ctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
12609887 |
ctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaact |
12609986 |
T |
|
| Q |
117 |
tctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |
|
|
| T |
12609987 |
tctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgata--cccatcaatctcacat |
12610084 |
T |
|
| Q |
217 |
gcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610085 |
gcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaat |
12610184 |
T |
|
| Q |
317 |
tttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaac |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12610185 |
tttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacattgcccaaac |
12610284 |
T |
|
| Q |
417 |
tatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaagaaaatgcaaggatatcaaaagagagagctaaaagagatattttgatggca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610285 |
tatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaagaaaatgcaaggatatcaaaagagagagctaaaagagatattttgatggca |
12610384 |
T |
|
| Q |
517 |
tccaataggtcatcacaaggttttaaatcgaggttgcatcacaatccttgataatgc-aaaaaattgcaaacatgtattctgattctatcgctgtcatca |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610385 |
tccaataggtcatcacaaggttttaaatcgaggttgcatcacaatccttgataatgcaaaaaaattgcaaacatgtattctgattctatcgctgtcatca |
12610484 |
T |
|
| Q |
616 |
agacatc-aaaaaccttgaattcgcgacacattgctaacttttnnnnnnnnta----tatatgttgttttaacatggcaaatagtggtattgttctaaag |
710 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610485 |
agacatcaaaaaaccttgaattcgcgacacattgctaaactttaaaaaaaaaaaaataatatgttgttttaacatggcaaatagtggtattgttctaaag |
12610584 |
T |
|
| Q |
711 |
tattaaccatt |
721 |
Q |
| |
|
||| ||||||| |
|
|
| T |
12610585 |
tatcaaccatt |
12610595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 28 - 451
Target Start/End: Complemental strand, 15885971 - 15885548
Alignment:
| Q |
28 |
catattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggtt |
125 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15885971 |
catattcttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggtt |
15885872 |
T |
|
| Q |
126 |
cagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtcca |
225 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||||||| || |
|
|
| T |
15885871 |
cagtccaatactttggatctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataa--ccatcaatctcacatgcttgttca |
15885774 |
T |
|
| Q |
226 |
cattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaa |
325 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | || || ||| |
|
|
| T |
15885773 |
cattctcttggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaa |
15885674 |
T |
|
| Q |
326 |
catttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactatagtaga |
425 |
Q |
| |
|
|| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| || | |
|
|
| T |
15885673 |
caattccttttgtgttgaacatttctcttacttcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggt |
15885574 |
T |
|
| Q |
426 |
agctgatgtatcacctccagcaccaa |
451 |
Q |
| |
|
| |||||||| ||||||||||||| |
|
|
| T |
15885573 |
actcgatgtatctcctccagcaccaa |
15885548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 22 - 465
Target Start/End: Original strand, 12636986 - 12637426
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
12636986 |
cctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctct |
12637085 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||| |||||| |||||||| ||| ||| ||||| |||| |||| |
|
|
| T |
12637086 |
ctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgata--cccttcaatttcacatgct |
12637183 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||| |||| ||||| ||||||||||||| | |||| |
|
|
| T |
12637184 |
tgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagtttt |
12637280 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
| ||||| |||||||| |||||||||||| ||| || |||| |||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
12637281 |
caccaacagttcctttcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactat |
12637380 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaacgatattctgaaaa |
465 |
Q |
| |
|
|||| | |||||| |||||||||||||||| ||| | ||||||| |
|
|
| T |
12637381 |
ggtagtggatgatgtttcacctccagcaccaatgatgtcctgaaaa |
12637426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 479
Target Start/End: Original strand, 62138 - 62596
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
62138 |
cctgggcatattctttttccagcaccaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctct |
62237 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||| ||| |||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
62238 |
ctggttccgtccagtaccttggatctcttccgattgcccatgcattaactatcagctttgttttcattggtatat--gatacccatcaatctcacatgct |
62335 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
| || ||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||| |||||| | || ||||||||| |||||| ||| |
|
|
| T |
62336 |
tctctacattctcttggaagtaaaagagcacctggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgcatacaacttt |
62435 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
| |||| | ||| ||||||||| |||||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| |
|
|
| T |
62436 |
catcaaaagctcccttcatgttgtatatttctctcacttcatcttgtgctttcttcatcactcttggatctcttaccaactctgccattgcccaaactac |
62535 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaacgatattctgaaaa-gaaaatgcaaggat |
479 |
Q |
| |
|
| ||||||||||||||||||||||||||| || | ||||||| ||||||||||||| |
|
|
| T |
62536 |
gctcaaagctgatgtatcacctccagcaccaaacatgtcctgaaaattaaaatgcaaggat |
62596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 22 - 451
Target Start/End: Original strand, 21779798 - 21780227
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||||||| ||||||| || |||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
21779798 |
cctgggcatattcttcttccggcaccaaatggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatct |
21779897 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||| ||||||| ||||||||| | || || || || | || |||| || |||| |||| |
|
|
| T |
21779898 |
ctggttcagtccagtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgt--ggtaaccatttatatcacatgct |
21779995 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
|| | ||||||||| || | |||||||| |||||||||||| ||||||||| ||||| |||||||| || |||||| |||||||||| || ||||||| |
|
|
| T |
21779996 |
tgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaatttt |
21780095 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
| ||||| |||||||||| ||||| | |||||| || |||||||||||||||||||| | |||| ||||||||||| ||| ||| |||||| |||| |
|
|
| T |
21780096 |
catcaacccttcctttcattttgaaaacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctaccattgcccaatctat |
21780195 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaa |
451 |
Q |
| |
|
|| |||||||| |||||||||||||||| |
|
|
| T |
21780196 |
ggtgcttgctgatgtctcacctccagcaccaa |
21780227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 22 - 447
Target Start/End: Original strand, 23145905 - 23146330
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||| |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
23145905 |
cctggacatattcttcttccagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctct |
23146004 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||||| |||||||||| |||||| | || || ||||| | ||| |||| || |||| | || |
|
|
| T |
23146005 |
ctggttcagtccagtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgt--gataaccatttatatcacattct |
23146102 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
|| | ||||||||| || | |||||||| |||||||||||| ||||||||| ||||| |||||| | || |||||| |||||||||| || ||||||| |
|
|
| T |
23146103 |
tgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaatttt |
23146202 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
| ||||| |||||||||| ||||| | ||||| ||||||||||||||||||||||| | |||| |||| ||||||| ||| ||| |||||| |||| |
|
|
| T |
23146203 |
catcaacccttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctaccattgcccaatctat |
23146302 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagca |
447 |
Q |
| |
|
|| |||||||| |||||||||||| |
|
|
| T |
23146303 |
ggtgcttgctgatgtctcacctccagca |
23146330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 22 - 451
Target Start/End: Original strand, 23036155 - 23036584
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||| ||| ||||||||||| ||||| ||| ||||||||||||| |||||||| |||| |
|
|
| T |
23036155 |
cctgggcatattcttcttccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctct |
23036254 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||| ||||| | | | ||||| || || || ||||| | ||| |||| ||| ||| |||| |
|
|
| T |
23036255 |
ctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgt--gataaccatttatcacacatgct |
23036352 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
|| |||| |||||||| || |||||||| ||||||||||||||| | ||| ||||| || ||||| || |||||| ||||||| || |||||||| | |
|
|
| T |
23036353 |
tgaacacactctcttggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattct |
23036452 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
|||| || |||||||||| ||||| | ||||| |||||| |||||||||||||||| | |||| || |||||||| |||| ||| |||||| |||| |
|
|
| T |
23036453 |
cttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctat |
23036552 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaa |
451 |
Q |
| |
|
|| |||||||| |||||||||||||||| |
|
|
| T |
23036553 |
ggtgcttgctgatgtctcacctccagcaccaa |
23036584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 22 - 451
Target Start/End: Original strand, 23039026 - 23039455
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||| ||||| | ||||| ||| ||| | ||| | | |||||||||||||||||| |||| |
|
|
| T |
23039026 |
cctgggcatattcttcttccggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctct |
23039125 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
| || ||||||||||| |||||||||||| |||| ||||| ||||||||||||||||| || || || ||||| | ||| |||| ||||||| || | |
|
|
| T |
23039126 |
ccggctcagtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataa--ccatttatctcacatgtt |
23039223 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
|| | |||||||||||| || |||||||| ||||||||||||||| | ||| ||||| ||||||||||| |||||| |||||||||| || ||||||| |
|
|
| T |
23039224 |
tgacgacattctcttggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaatttt |
23039323 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
| ||||| |||||||||| ||||| | ||||| ||||||||||| ||||||||||| | |||| |||||||| || ||| ||| ||||| |||| |
|
|
| T |
23039324 |
catcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctaccattgcccagtctat |
23039423 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaa |
451 |
Q |
| |
|
|| |||||||| |||||||||||||||| |
|
|
| T |
23039424 |
ggtgcttgctgatgtctcacctccagcaccaa |
23039455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 22 - 451
Target Start/End: Original strand, 23024257 - 23024686
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||||| |||||||| ||| ||||||| ||| |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
23024257 |
cctggacatattcttcgtcccgcaccaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctct |
23024356 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||| ||||| ||||||||||||||||| | || |||| || | ||| || || |||| || || | |
|
|
| T |
23024357 |
ctggttcggtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgt--cataaccgtctatcttacatgat |
23024454 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
|| |||||||||| || | |||||| || | |||||||||||||| | ||| ||||| |||| ||| || |||||| | |||||||| |||||||| | |
|
|
| T |
23024455 |
tgagcacattctctcggtattaaaagtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattct |
23024554 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
||||||| |||||||||| ||||| || |||| |||||| |||||||||||||||| | |||| || | |||||| |||| ||| |||||| |||| |
|
|
| T |
23024555 |
cttcaacccttcctttcatattgaaaatctctcgcacctcagcttgtgctttcttcattattcttggattctttaccatttctgccattgcccaatctat |
23024654 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaa |
451 |
Q |
| |
|
|| |||||||| |||||||||||||||| |
|
|
| T |
23024655 |
ggtgcttgctgatgtctcacctccagcaccaa |
23024686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 22 - 451
Target Start/End: Original strand, 23148743 - 23149172
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||| || ||| ||||||| ||| |||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
23148743 |
cctgggcatattcttcttccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctct |
23148842 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||| ||||| ||||||| |||||| || | || || || || | ||| |||| || |||| ||| |
|
|
| T |
23148843 |
ctggttcagtccagtagtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataa--ccatttatatcacacgct |
23148940 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
|| | ||||||||| || | |||||||| | |||||||||| ||||||||| ||||| |||||| | || |||||| |||||||||| || ||||||| |
|
|
| T |
23148941 |
tgactacattctctcggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaatttt |
23149040 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
| ||||| ||||||||||| ||||| | ||||| ||||||||||||||||||||||| | |||| |||| |||||| |||| ||| |||||| |||| |
|
|
| T |
23149041 |
catcaacctttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatctat |
23149140 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaa |
451 |
Q |
| |
|
|| |||||||| || ||||||||||||| |
|
|
| T |
23149141 |
ggtgcttgctgatgtctcgcctccagcaccaa |
23149172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 22 - 451
Target Start/End: Original strand, 23140031 - 23140460
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||| |||||||||| ||| |||||||| |||||||||||||||| | ||||||| ||| ||||| | | || |||||||||||||||||||| ||| |
|
|
| T |
23140031 |
cctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttct |
23140130 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || |||||||||||||| | |||||| | || | |||||| | ||| |||| ||||||| |||| |
|
|
| T |
23140131 |
ctggttcagtccagtagtttggatctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgt--gataaccatgtatctcacatgct |
23140228 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
|| ||||| |||||||| || |||||||| | |||| ||||||||| ||||| ||||| || | ||| || |||||| ||| || || || ||||||| |
|
|
| T |
23140229 |
tgaccacactctcttggtagcaaaagaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaatttt |
23140328 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
| ||||| |||||||||| ||||| | ||||| ||||||||||| |||||||||| | |||| |||||||| || ||| ||| |||||| |||| |
|
|
| T |
23140329 |
catcaacccttcctttcattttgaaaacctctctcacctcatcttgcactttcttcattattcttggatcccttatcatttctaccattgcccaatctat |
23140428 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaa |
451 |
Q |
| |
|
|| |||||||| |||||||||||||||| |
|
|
| T |
23140429 |
ggtgcttgctgatgtctcacctccagcaccaa |
23140460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 22 - 451
Target Start/End: Original strand, 23032699 - 23033113
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||| ||| ||||| ||| |||||||||||| |
|
|
| T |
23032699 |
cctgggcatattcttcttccggcaccaaagggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctct--------------- |
23032783 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||| | ||| |||| ||||||| |||| |
|
|
| T |
23032784 |
ctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgt--gataaccatttatctcacatgct |
23032881 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
|| || ||||||||||| || |||||||| ||| |||||| ||||| | ||| ||||| || ||||| || |||||| |||| || || |||||| |
|
|
| T |
23032882 |
tgaccgcattctcttggtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaatttt |
23032981 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
| ||||| ||||||||||| ||||| | ||||| |||||| |||||||||||||||| | || || ||| |||| || |||| |||||||||| |||| |
|
|
| T |
23032982 |
catcaacctttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctat |
23033081 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaa |
451 |
Q |
| |
|
|| |||||||| || ||||||||||||| |
|
|
| T |
23033082 |
ggtgcttgctgatgtctcgcctccagcaccaa |
23033113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 22971936 - 22972174
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||| | |||||| | || ||| ||| | || ||||| || ||||||||| | | |
|
|
| T |
22971936 |
cctggacaaattcttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttat |
22972035 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
|||| |||||||| || |||||||| |||||||| ||||| ||||||| ||||||| | |||||||||||||| | ||| ||||||||||||| ||| |
|
|
| T |
22972036 |
ctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgt--gataaccatcaatctcacaagct |
22972133 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtg |
260 |
Q |
| |
|
|||||||| | ||||| | |||||||||||| |||||||| |
|
|
| T |
22972134 |
tgtccacacacccttggtactaaaagaggaccaggagggtg |
22972174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 28 - 377
Target Start/End: Original strand, 23017053 - 23017402
Alignment:
| Q |
28 |
catattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggtt |
125 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| || || ||| ||||||| ||| |||| | | | ||||||||||||||||||||| ||||||||| |
|
|
| T |
23017053 |
catattcttcttccaccaccaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggtt |
23017152 |
T |
|
| Q |
126 |
cagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtcca |
225 |
Q |
| |
|
|||||||||| |||||||||||| | || ||||| ||||| | ||||||||| | || | |||||| | ||| |||| ||||||| ||||| ||| |
|
|
| T |
23017153 |
cagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgt--gataaccatgtatctcacatgctttacca |
23017250 |
T |
|
| Q |
226 |
cattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaa |
325 |
Q |
| |
|
||||||||||| || |||||||| ||| ||| ||||| || | ||| ||||| |||||||| || | |||| ||||||||||||| || ||||| |||| |
|
|
| T |
23017251 |
cattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcatttatgcatttttcatcaa |
23017350 |
T |
|
| Q |
326 |
catttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcat |
377 |
Q |
| |
|
| ||||||||| || | | || || || |||||||||||||||||||| |
|
|
| T |
23017351 |
cccgtcctttcatttttataacatccctcacttcatcttgtgctttcttcat |
23017402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 22946392 - 22946618
Alignment:
| Q |
25 |
ggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctg |
122 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||||||||||||||| | |||||| | || ||| ||| | || ||||| || ||||||||| | |||| |
|
|
| T |
22946392 |
ggacaaattctccttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctg |
22946491 |
T |
|
| Q |
123 |
gttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgt |
222 |
Q |
| |
|
| |||||||| || |||||||| |||||||| ||||| ||||||| ||||||| | || ||||||||||| | ||| ||||||||||||| ||||||| |
|
|
| T |
22946492 |
gatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgt--gataaccatcaatctcacatgcttgt |
22946589 |
T |
|
| Q |
223 |
ccacattctcttggaagtaaaagaggacc |
251 |
Q |
| |
|
|||| | || |||| |||||||||||| |
|
|
| T |
22946590 |
gcacacaccctaggaattaaaagaggacc |
22946618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 284
Target Start/End: Complemental strand, 22941586 - 22941327
Alignment:
| Q |
25 |
ggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtagaatagag--ctaccgatgaatctctctggataaaacctctctg |
122 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||||||||||||| || || || || | || | || || || || |||||||| ||||||| |
|
|
| T |
22941586 |
ggacacattcttcttccagcaccaaatggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaatctctctg |
22941487 |
T |
|
| Q |
123 |
gttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgt |
222 |
Q |
| |
|
| ||| ||| | ||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||||| || |||| ||||||| |
|
|
| T |
22941486 |
ggtcatcccaatgatttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatttcacatgcttgt |
22941389 |
T |
|
| Q |
223 |
ccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaac |
284 |
Q |
| |
|
||||||||||||||||| |||| | | | |||||||| || || || |||||||||||||| |
|
|
| T |
22941388 |
ccacattctcttggaagcaaaaatgcagcaggagggtgcaatctcaatgtctctttcacaac |
22941327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 244
Target Start/End: Original strand, 22831829 - 22832042
Alignment:
| Q |
31 |
attcttcttccagcaccaaagggaatgtactcaaaattattccctttgtaga--atagagctaccgatgaatctctctggataaaacctctctggttcag |
128 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||| || || ||| | | | ||| | |||||||| || |||||||| || ||||| || |
|
|
| T |
22831829 |
attcttctaccagcaccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgt |
22831928 |
T |
|
| Q |
129 |
tccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacat |
228 |
Q |
| |
|
||| | ||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||||| ||||||| ||||| ||||||| |
|
|
| T |
22831929 |
cccaatgatttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatctcacatgcttttccacat |
22832026 |
T |
|
| Q |
229 |
tctcttggaagtaaaa |
244 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
22832027 |
tctcttggaagcaaaa |
22832042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 137 - 296
Target Start/End: Complemental strand, 22916769 - 22916612
Alignment:
| Q |
137 |
tttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttgg |
236 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||| |||| |||||||| || |||| |||||||||||| || ||||| |
|
|
| T |
22916769 |
tttggatctcttccaatggcccaagcattcactatcactttgcttttaaatgg--tataccatacccatttatttcacatgcttgtccacactcccttgg |
22916672 |
T |
|
| Q |
237 |
aagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaata |
296 |
Q |
| |
|
| ||||| | || ||||| ||||| || || |||||||||||||| |||||||||| |
|
|
| T |
22916671 |
caataaaaatgctccaggaggatgtaatctcaatgtctctttcacaacacactttaaata |
22916612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 296
Target Start/End: Original strand, 22932318 - 22932475
Alignment:
| Q |
137 |
tttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttgg |
236 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||| || |||||||| | ||| ||| ||| ||||| || |||| |||||||||||| || ||||| |
|
|
| T |
22932318 |
tttggatctcttccaatggcccaaacattcactattactttgcttttaaatgggataccata--cccatttatttcacatgcttgtccacactcccttgg |
22932415 |
T |
|
| Q |
237 |
aagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaata |
296 |
Q |
| |
|
| ||||| | ||| ||||||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
22932416 |
caataaaaatgcaccaggagggtgtaatctcaatgtctctttcacaacacactttaaata |
22932475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 22986265 - 22986318
Alignment:
| Q |
25 |
ggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttg |
78 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
22986265 |
ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttg |
22986318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 22 - 451
Target Start/End: Complemental strand, 6769 - 6340
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctct |
119 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||||| |||||| ||| ||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
6769 |
cctgggcaaattcttcttccagcaccaaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctct |
6670 |
T |
|
| Q |
120 |
ctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgct |
219 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||| ||||| ||||||| ||||||||| || | | ||||| | |||| |||| ||||||| |||| |
|
|
| T |
6669 |
ctggttcagtccagaagtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgt--tataaccatttatctcacatgct |
6572 |
T |
|
| Q |
220 |
tgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaatttt |
319 |
Q |
| |
|
| |||||||||||||| || |||||||| |||||||||||||||| | ||| ||||| || ||||| || |||||| |||||| | || |||||| |
|
|
| T |
6571 |
ttaccacattctcttggtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtttgctaatgtaatttt |
6472 |
T |
|
| Q |
320 |
cttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaactat |
419 |
Q |
| |
|
| ||||| ||||| |||| | || | ||||| |||||| ||||||||||| |||| | |||| ||||||| || |||| ||| |||||| |||| |
|
|
| T |
6471 |
catcaacctttccattcaatgtaaaaacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcatttctgccattgcccaatctat |
6372 |
T |
|
| Q |
420 |
agtagaagctgatgtatcacctccagcaccaa |
451 |
Q |
| |
|
|| | ||||||||||||||||||||||||| |
|
|
| T |
6371 |
ggtggttgctgatgtatcacctccagcaccaa |
6340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 5594236 - 5594023
Alignment:
| Q |
31 |
attcttcttccagcaccaaagggaatgtactcaaaattattccctttgtaga--atagagctaccgatgaatctctctggataaaacctctctggttcag |
128 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||| || || ||| | | | ||| | |||||||| || |||||||| || ||||| || |
|
|
| T |
5594236 |
attcttctaccagcaccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgt |
5594137 |
T |
|
| Q |
129 |
tccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacat |
228 |
Q |
| |
|
||| | ||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||||| ||||||| ||||| ||||||| |
|
|
| T |
5594136 |
cccaatgatttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatctcacatgcttttccacat |
5594039 |
T |
|
| Q |
229 |
tctcttggaagtaaaa |
244 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
5594038 |
tctcttggaagcaaaa |
5594023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 7154548 - 7154492
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttg |
78 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
7154548 |
cctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttg |
7154492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 41465854 - 41465802
Alignment:
| Q |
122 |
ggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcac |
174 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41465854 |
ggttcactccaatactttggatctcttccaatcgcccatgcatttactatcac |
41465802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 41305343 - 41305309
Alignment:
| Q |
134 |
tactttggatctcttccaatcgcccatgcattgac |
168 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
41305343 |
tactttggatctcttccaatcgcccaagcattgac |
41305309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 2433697 - 2433639
Alignment:
| Q |
22 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgta |
80 |
Q |
| |
|
|||||||||||||| ||||| |||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
2433697 |
cctggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgta |
2433639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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