View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_11 (Length: 485)
Name: NF20484_low_11
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_11 |
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| [»] scaffold1107 (1 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 92 - 397
Target Start/End: Complemental strand, 31037568 - 31037263
Alignment:
| Q |
92 |
aagacatgattgagtacatacaccaaaacgcccactaaagtgatattatttgaagaaacataatacaaactaattagaagctattttactcaacaatgaa |
191 |
Q |
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|||| |||| || |||||||||||||||| | |||||| | ||||||||| |||||||||||||||| || ||||||||| |||||||||||||||| |
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| T |
31037568 |
aagagatgagtgggtacatacaccaaaaccctcactaagatattattatttgtagaaacataatacaaaagaaatagaagctagtttactcaacaatgaa |
31037469 |
T |
|
| Q |
192 |
gaagatgagcaccatgttccgtagttacttgtgctacaagtaattgaagcttaggcggttttagggttagttattagtagtaactaacttagcagaattg |
291 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31037468 |
gaagatgagcaccatgttccttagttacttgtgctacaagtaattgaagcttaggcagttttagggttagttattagtagtaactaacttagcagaattg |
31037369 |
T |
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| Q |
292 |
tagaagtttgttatgatagagtgaagtagagataacaatagcatatcatgatccttcactaacaaactatatacatgtaatagcttcagttacaagtcaa |
391 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31037368 |
tacaagtttgttatgatagagtgaagtagagataacaatagcatatcatgatccttcactaacaaactatatacatgtaatagcttcagttacaagtcaa |
31037269 |
T |
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| Q |
392 |
tgtgaa |
397 |
Q |
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|||||| |
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| T |
31037268 |
tgtgaa |
31037263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1107 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1107
Description:
Target: scaffold1107; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 397
Target Start/End: Complemental strand, 864 - 711
Alignment:
| Q |
248 |
ggttttagggttagttattagtagtaactaacttagcagaattgtag---aagtttgttatgatagagtgaagtagagataacaatagcatatcatgatc |
344 |
Q |
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| T |
864 |
ggttttggagttagttaagagtagtaactaacttagctgaattgtaggagaagtttgttatgttagagtgaagt-gagatcacaatagcataacatgatc |
766 |
T |
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| Q |
345 |
cttcactaacaaactat--atacatgtaatagcttcagttacaagtcaatgtgaa |
397 |
Q |
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||| ||||||||||||| |||| ||||||| |||| || ||||| |||||||| |
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| T |
765 |
ctttactaacaaactataaatacttgtaataacttccttttcaagttaatgtgaa |
711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 248 - 397
Target Start/End: Complemental strand, 14925 - 14772
Alignment:
| Q |
248 |
ggttttagggttagttattagtagtaactaacttagcagaattgtag---aagtttgttatgatagagtgaagtagagataacaatagcatatcatgatc |
344 |
Q |
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|||||| | |||||||| ||||||||| |||||||| ||||||||| |||||||||||| ||||||||||| ||||| ||||||||||| ||||||| |
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| T |
14925 |
ggttttggagttagttaagagtagtaaccaacttagctgaattgtaggaaaagtttgttatgttagagtgaagt-gagatcacaatagcataacatgatc |
14827 |
T |
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| Q |
345 |
cttcactaacaaactat--atacatgtaatagcttcagttacaagtcaatgtgaa |
397 |
Q |
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||| |||||| |||||| |||| ||||||| |||| || ||||| |||||||| |
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| T |
14826 |
ctttactaactaactataaatacttgtaataacttccttttcaagttaatgtgaa |
14772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 4538044 - 4537968
Alignment:
| Q |
168 |
gaagctattttactcaacaatgaagaagatgagcaccatgttccgtagttacttgtgctacaagtaattgaagctta |
244 |
Q |
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||||||| |||||| | ||||||||||||||||| ||| ||| ||||||||| | |||||| |||||||||||| |
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| T |
4538044 |
gaagctagtttactaagtaatgaagaagatgagcatcatagtcctcagttacttgcgatacaagcaattgaagctta |
4537968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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