View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_12 (Length: 438)
Name: NF20484_low_12
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 3530665 - 3531083
Alignment:
| Q |
16 |
actatatctggtcagacaagttccataaccgaaattagtcataagcaaagctcgtatatattagcactaataacatgtttatgaaaatatgtctaaaatc |
115 |
Q |
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| T |
3530665 |
actatatgtggtcagacaagttccacaacggaaattagtcataagcaaagttcgtatatatttgcactaataacatgcttatgaaaatatgtctaaaatc |
3530764 |
T |
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| Q |
116 |
taacaaaaattgacatttggttgtaggtatttggaagggccaaacagggcaatcaaattggcctcaacaaagctcatggatgatggatttgtctacaaat |
215 |
Q |
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| T |
3530765 |
taacaaaaattgacatttggttgtaggtatttggaagggccaaacagggcaatcaaattggcctcaacaaagctcatagataatggatttgtctacaaat |
3530864 |
T |
|
| Q |
216 |
ataatctgaagaagatattagatgatagtatcagatgcgcaagaaggaccggcgatcttagtatgtcatgatctataagttgtagcattatattaactaa |
315 |
Q |
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| T |
3530865 |
ataatctgaagaagatattagatgatagtatcagatgtgcaagaaggaccggcgatcttagtatgtcatgatctataagttgtagcattatattaactaa |
3530964 |
T |
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| Q |
316 |
ttgattaattatagacttgcaccaaaatagataacatcgataatttatgtacgtgtatgtttgtgtttttcatcatttcacttcatttattaagaa---- |
411 |
Q |
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| T |
3530965 |
ttgattaattatagacttgcaccaaaatagataacatcgataatttatgtacgtgtatgtttgtgtttttcatcatttcacttcatttattaagaaaaac |
3531064 |
T |
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| Q |
412 |
aaacagagagtgtctctgc |
430 |
Q |
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| T |
3531065 |
aaacagagagtgtctctgc |
3531083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 69 - 281
Target Start/End: Original strand, 3551315 - 3551529
Alignment:
| Q |
69 |
gtatatattagcactaataacatgtttatgaaaatatgtct--aaaatctaacaaaaattgacatttggttgtaggtatttggaagggccaaacagggca |
166 |
Q |
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| T |
3551315 |
gtatatatttgcactaataacatgcttatgaaaatatctctctaaactctaaaaatatttggtattttgctgtaggtatttggaagggcaaaacagggga |
3551414 |
T |
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| Q |
167 |
atcaaattggcctcaacaaagctcatggatgatggatttgtctacaaatataatctgaagaagatattagatgatagtatcagatgcgcaagaaggaccg |
266 |
Q |
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| T |
3551415 |
atcaaatgggactcaaacaagctcatagataatggatttgtctacaaatatgatctgaagatgatattagatgataatatcagatgcttaagaagggtcg |
3551514 |
T |
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| Q |
267 |
gcgatcttagtatgt |
281 |
Q |
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| T |
3551515 |
gcgatcatagtatgt |
3551529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 287
Target Start/End: Original strand, 3544211 - 3544414
Alignment:
| Q |
84 |
aataacatgtttatgaaaatatgtctaaaatctaacaaaaattgacatttggttgtaggtatttggaagggccaaacagggcaatcaaattggcctcaac |
183 |
Q |
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||||| ||| || |||||| || |||||||||| |||| | ||||||| || || |||||||||||||| |||||||| |||||||||| ||| ||||| |
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| T |
3544211 |
aataatatgcttttgaaaaaatatctaaaatcttacaatatttgacatctgattttaggtatttggaagagccaaacaaagcaatcaaatgggcatcaac |
3544310 |
T |
|
| Q |
184 |
aaagctcatggatgatggatttgtctacaaatataatctgaagaagatattagatgatagtatcagatgcgcaagaaggaccggcgatcttagtatgtca |
283 |
Q |
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| T |
3544311 |
aaagctcacggacaaagggtttgtctataaatatgatctcaagatgatactagacgatagtgtcaaatgcggaagaaggacgggcgattttagtatgtaa |
3544410 |
T |
|
| Q |
284 |
tgat |
287 |
Q |
| |
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|||| |
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| T |
3544411 |
tgat |
3544414 |
T |
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