View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20484_low_15 (Length: 357)

Name: NF20484_low_15
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20484_low_15
NF20484_low_15
[»] chr6 (12 HSPs)
chr6 (115-238)||(13761923-13762047)
chr6 (1-113)||(13762830-13762940)
chr6 (236-278)||(30341421-30341463)
chr6 (237-278)||(15990103-15990144)
chr6 (239-278)||(15508085-15508124)
chr6 (294-343)||(11427673-11427722)
chr6 (236-281)||(31110817-31110862)
chr6 (246-343)||(32869685-32869782)
chr6 (239-278)||(4231548-4231587)
chr6 (244-343)||(22880654-22880753)
chr6 (234-276)||(6209528-6209570)
chr6 (294-343)||(23128123-23128172)
[»] chr7 (19 HSPs)
chr7 (230-278)||(38044188-38044236)
chr7 (237-343)||(8080379-8080485)
chr7 (238-278)||(22343360-22343400)
chr7 (238-278)||(41915740-41915780)
chr7 (236-343)||(38837214-38837321)
chr7 (237-343)||(7389387-7389493)
chr7 (238-343)||(3434561-3434666)
chr7 (294-343)||(3784050-3784099)
chr7 (236-277)||(7727903-7727944)
chr7 (294-343)||(19329897-19329946)
chr7 (235-343)||(40957703-40957811)
chr7 (239-281)||(8238212-8238255)
chr7 (239-278)||(40846174-40846213)
chr7 (294-349)||(41423737-41423792)
chr7 (294-343)||(3694422-3694471)
chr7 (236-281)||(11044185-11044230)
chr7 (236-277)||(18207177-18207218)
chr7 (294-343)||(19436183-19436232)
chr7 (294-343)||(38267095-38267144)
[»] chr3 (14 HSPs)
chr3 (236-343)||(49607411-49607518)
chr3 (239-280)||(45058611-45058652)
chr3 (239-343)||(53982011-53982115)
chr3 (239-349)||(8076393-8076503)
chr3 (237-281)||(11095411-11095455)
chr3 (237-281)||(33118909-33118953)
chr3 (239-343)||(33644200-33644304)
chr3 (243-343)||(52629304-52629404)
chr3 (244-343)||(48587087-48587186)
chr3 (239-281)||(26141590-26141632)
chr3 (237-342)||(27714888-27714993)
chr3 (238-278)||(36331439-36331479)
chr3 (242-278)||(42823114-42823150)
chr3 (237-277)||(54868957-54868997)
[»] chr1 (16 HSPs)
chr1 (236-343)||(38595151-38595258)
chr1 (234-331)||(2581910-2582007)
chr1 (239-343)||(3000319-3000423)
chr1 (239-278)||(50591061-50591100)
chr1 (238-349)||(51898673-51898784)
chr1 (236-277)||(5959062-5959103)
chr1 (294-343)||(27564731-27564780)
chr1 (236-281)||(32813244-32813289)
chr1 (239-280)||(47748443-47748484)
chr1 (239-343)||(9474872-9474976)
chr1 (239-343)||(47452316-47452420)
chr1 (239-278)||(41608554-41608593)
chr1 (235-281)||(23597149-23597195)
chr1 (237-331)||(38632329-38632423)
chr1 (294-343)||(44548372-44548421)
chr1 (294-343)||(50630513-50630562)
[»] chr8 (16 HSPs)
chr8 (236-278)||(16383374-16383416)
chr8 (239-281)||(30479532-30479574)
chr8 (237-278)||(34307214-34307255)
chr8 (229-349)||(37038469-37038589)
chr8 (236-275)||(24307626-24307665)
chr8 (237-275)||(24307857-24307895)
chr8 (238-280)||(32032724-32032766)
chr8 (239-343)||(12831047-12831151)
chr8 (239-343)||(15197333-15197437)
chr8 (239-343)||(34012292-34012396)
chr8 (294-349)||(5957885-5957940)
chr8 (237-343)||(14547920-14548026)
chr8 (239-281)||(15048239-15048281)
chr8 (294-343)||(9122240-9122289)
chr8 (294-343)||(44507083-44507132)
chr8 (237-281)||(4854921-4854965)
[»] chr5 (17 HSPs)
chr5 (236-278)||(3921326-3921368)
chr5 (237-343)||(36732938-36733044)
chr5 (238-343)||(2740273-2740378)
chr5 (244-349)||(18520874-18520979)
chr5 (239-343)||(40145407-40145511)
chr5 (238-278)||(2252229-2252269)
chr5 (239-331)||(14831814-14831906)
chr5 (239-343)||(33149634-33149738)
chr5 (234-281)||(28177770-28177817)
chr5 (239-281)||(26720516-26720558)
chr5 (239-281)||(26990265-26990307)
chr5 (294-344)||(31009043-31009093)
chr5 (239-349)||(35943882-35943992)
chr5 (237-275)||(39688961-39688999)
chr5 (239-281)||(42414360-42414402)
chr5 (244-281)||(36875661-36875698)
chr5 (294-342)||(13811707-13811755)
[»] chr4 (20 HSPs)
chr4 (236-278)||(19670777-19670819)
chr4 (236-349)||(50052418-50052531)
chr4 (239-343)||(6034044-6034148)
chr4 (239-343)||(11511458-11511562)
chr4 (237-281)||(55475189-55475233)
chr4 (226-343)||(29234241-29234356)
chr4 (238-280)||(44536804-44536846)
chr4 (237-343)||(48183045-48183151)
chr4 (239-277)||(55079776-55079814)
chr4 (239-344)||(3481654-3481759)
chr4 (222-275)||(29548023-29548076)
chr4 (237-278)||(32766956-32766997)
chr4 (238-275)||(47986207-47986244)
chr4 (239-343)||(41236347-41236451)
chr4 (236-343)||(480443-480550)
chr4 (236-343)||(42044363-42044470)
chr4 (239-281)||(8343221-8343263)
chr4 (235-277)||(29239882-29239924)
chr4 (294-343)||(24995103-24995152)
chr4 (238-278)||(50813953-50813993)
[»] chr2 (15 HSPs)
chr2 (236-350)||(33436089-33436203)
chr2 (238-343)||(5574484-5574589)
chr2 (244-349)||(28863460-28863565)
chr2 (239-343)||(17473020-17473124)
chr2 (237-343)||(9058478-9058584)
chr2 (234-344)||(27864699-27864809)
chr2 (237-343)||(30915461-30915567)
chr2 (229-278)||(43490111-43490160)
chr2 (236-275)||(45097799-45097838)
chr2 (237-343)||(10249378-10249484)
chr2 (236-278)||(26891565-26891607)
chr2 (239-281)||(40613960-40614002)
chr2 (294-343)||(13438398-13438447)
chr2 (244-281)||(19930878-19930915)
chr2 (231-275)||(42257185-42257229)
[»] scaffold0321 (1 HSPs)
scaffold0321 (236-281)||(10167-10212)
[»] scaffold1268 (1 HSPs)
scaffold1268 (233-349)||(919-1035)
[»] scaffold1267 (1 HSPs)
scaffold1267 (233-349)||(919-1035)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 13762047 - 13761923
Alignment:
Q  115 ataggtcatccaacccgcttgagtgggagccgaccaatgatgaagcaccatgtccgtaaaa-caatgaaatcgaatacattaaatgagtaaatgatttta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13762047 ataggtcatccaacccgcttgagtgggagccgaccaatgatgaagcaccatgttcgtaaaaccaatgaaatcgaatacattaaatgagtaaatgatttta 13761948  T
Q  214 taatccaaaaccattaaaaattaaa 238  Q
     |||||||||||| |||||||||||    
T  13761947 gaatccaaaaccactaaaaattaaa 13761923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13762940 - 13762830
Alignment:
Q  1 tccagatccttgatattatctctgaactcccctagtctaaagtccatatttctaaaagtctacttaatccacccctttaggacaaccttaagactctaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||    
T  13762940 tccagatccttgatattatctctcaactcccctagtctaaagtccatatttctaa--gtctccttaatccacccctttaggacaaccttaagactctaac 13762843  T
Q  101 tttgcctttgacc 113  Q
    |||||||||||||    
T  13762842 tttgcctttgacc 13762830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 30341463 - 30341421
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  30341463 aaagagttatgatacataaacacccttaggtggcaatacaccc 30341421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 15990144 - 15990103
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  15990144 aagagttatgatacataaacacccttaggtggcaatacaccc 15990103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 15508124 - 15508085
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  15508124 gagttatgatacataaacacccttaggtggcaatacaccc 15508085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 11427673 - 11427722
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || |||||||||||||||||||||| | |||||||||    
T  11427673 aaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttt 11427722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 31110862 - 31110817
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||    
T  31110862 aaagagttatgatacatagacatccttaggtggcaatacacccttt 31110817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 343
Target Start/End: Original strand, 32869685 - 32869782
Alignment:
Q  246 gatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  32869685 gatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 32869782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 4231548 - 4231587
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  4231548 gagttatgattcataaacatcattaggtggcaatacaccc 4231587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 22880753 - 22880654
Alignment:
Q  244 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||| ||||| |||||||||||||||||||||            ||| |||||||| || ||||||||| |||||||||||| | |||||||||    
T  22880753 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 22880654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 6209570 - 6209528
Alignment:
Q  234 ttaaagagttatgatacataaacaccattaggtggcaatacac 276  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||    
T  6209570 ttaaagagtaatgatacatagacacccttaggtggcaatacac 6209528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 23128172 - 23128123
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || ||||||||||||| |||||||| | |||||||||    
T  23128172 aaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttt 23128123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 38044188 - 38044236
Alignment:
Q  230 aaaattaaagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  38044188 aaaattgaagagttatgatacataaacacccttaggtggcaatacaccc 38044236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 8080485 - 8080379
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 336  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  8080485 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 8080386  T
Q  337 tctcttt 343  Q
    |||||||    
T  8080385 tctcttt 8080379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 22343360 - 22343400
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  22343360 agagttatgatacataaacacccttaggtggcaatacaccc 22343400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 41915740 - 41915780
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  41915740 agagttatgatacataaacacccttaggtggcaatacaccc 41915780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 38837214 - 38837321
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 335  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||             |||||||||||| || ||||||||| |||||||||||| | |    
T  38837214 aaagagtaatgatacatagacacccttaggtggcaatacacccttgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacact 38837313  T
Q  336 ttctcttt 343  Q
    ||||||||    
T  38837314 ttctcttt 38837321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 343
Target Start/End: Original strand, 7389387 - 7389493
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 336  Q
    |||||| |||||||||| ||||| |||||||||||||||| ||||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  7389387 aagagtaatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 7389486  T
Q  337 tctcttt 343  Q
    |||||||    
T  7389487 tctcttt 7389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 343
Target Start/End: Original strand, 3434561 - 3434666
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatttt 337  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||            |||| ||||||| || |||||||||||||||||||||| | |||    
T  3434561 agagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacacttt 3434660  T
Q  338 ctcttt 343  Q
    ||||||    
T  3434661 ctcttt 3434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 3784050 - 3784099
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || |||||||||||||||||||||| | |||||||||    
T  3784050 aaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttt 3784099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 7727903 - 7727944
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacacc 277  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  7727903 aaagagttatgatacataaacacccttaggtggtaatacacc 7727944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 19329897 - 19329946
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| |||||||||||| |||||||||||| | |||||||||    
T  19329897 aaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttt 19329946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 343
Target Start/End: Original strand, 40957703 - 40957811
Alignment:
Q  235 taaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatat 334  Q
    |||||||| |||||||||| ||||  |||||||||||||||| ||||            |||||||||||| || |||||||||||||| ||||||| |     
T  40957703 taaagagtaatgatacatagacactcttaggtggcaatacactctttgatacccacacaaaaatctgacacgtagtcacgtggatcccgtacaagcacac 40957802  T
Q  335 tttctcttt 343  Q
    |||||||||    
T  40957803 tttctcttt 40957811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 8238212 - 8238255
Alignment:
Q  239 gagttatgatacataaacaccat-taggtggcaatacacccttt 281  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  8238212 gagttatgatacataaacaccctgtaggtggcaatacacccttt 8238255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 40846213 - 40846174
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccc 40846174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 41423737 - 41423792
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctctttcatctc 349  Q
    |||||||||||  |  |||||| ||||||| |||||||||||||||||||||||||    
T  41423737 aaaatctgacatgtggtcacgtagatcccgtacaagcatattttctctttcatctc 41423792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 3694422 - 3694471
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || ||| |||||||||||||||||| | |||||||||    
T  3694422 aaaatctgacacgtagtcatgtggatcccgcacaagcacactttctcttt 3694471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 11044185 - 11044230
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||| |||||||||| ||||| ||||||||||||||| |||||    
T  11044185 aaagagtaatgatacatagacacccttaggtggcaatacatccttt 11044230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 18207177 - 18207218
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacacc 277  Q
    |||||||||||||||||| ||| | |||||||||||||||||    
T  18207177 aaagagttatgatacatagacaaccttaggtggcaatacacc 18207218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 19436232 - 19436183
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || |||||||||||||||| ||||| | |||||||||    
T  19436232 aaaatctgacacgtagtcacgtggatcccgcataagcacactttctcttt 19436183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 38267095 - 38267144
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  38267095 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 38267144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 49607411 - 49607518
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 335  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||||||| |||||||| | |    
T  49607411 aaagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacact 49607510  T
Q  336 ttctcttt 343  Q
    ||||||||    
T  49607511 ttctcttt 49607518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 45058652 - 45058611
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctt 280  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  45058652 gagttatgatacataaacacccttaggtggcaatacaccctt 45058611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 53982011 - 53982115
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 53982110  T
Q  339 tcttt 343  Q
    |||||    
T  53982111 tcttt 53982115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 8076393 - 8076503
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||||||||| |||||||||| ||||||||||            ||||||| |||| || ||||||||| |||||||||||| | ||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttc 8076492  T
Q  339 tctttcatctc 349  Q
    |||||| ||||    
T  8076493 tctttcctctc 8076503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 11095455 - 11095411
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||    
T  11095455 aagagtaatgatacatagacacccttaggtggcaatacacccttt 11095411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 33118953 - 33118909
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||    
T  33118953 aagagttatgatacatagacacccttaggtgacaatacacccttt 33118909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 33644200 - 33644304
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| || ||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  33644200 gagtaatgatacatagacacccttgggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 33644299  T
Q  339 tcttt 343  Q
    |||||    
T  33644300 tcttt 33644304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 343
Target Start/End: Original strand, 52629304 - 52629404
Alignment:
Q  243 tatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctctt 342  Q
    ||||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | ||||||||    
T  52629304 tatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctctt 52629403  T
Q  343 t 343  Q
    |    
T  52629404 t 52629404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 48587186 - 48587087
Alignment:
Q  244 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||| | ||| |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||| | | |||||||||    
T  48587186 atgatacatagatacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggatcccgcacaagtacactttctcttt 48587087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 26141632 - 26141590
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  26141632 gagttatgatacatagacatccttaggtggcaatacacccttt 26141590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 342
Target Start/End: Complemental strand, 27714993 - 27714888
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 336  Q
    |||||| |||||||||| ||||| |||||||| ||||||||||||            |||||||||||| || ||| ||||| |||||||||||| | ||    
T  27714993 aagagtaatgatacatagacacctttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactt 27714894  T
Q  337 tctctt 342  Q
    ||||||    
T  27714893 tctctt 27714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 36331479 - 36331439
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||||| |||| ||||||| |||||    
T  36331479 agagttatgatacataaacacccttagatggcaatgcaccc 36331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 42823114 - 42823150
Alignment:
Q  242 ttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||||| |||| |||||||||    
T  42823114 ttatgatacataaacaccattatgtggtaatacaccc 42823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 54868997 - 54868957
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacacc 277  Q
    |||||| |||||||||| ||||| |||||||||||||||||    
T  54868997 aagagtaatgatacatagacacccttaggtggcaatacacc 54868957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 38595151 - 38595258
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 335  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | |    
T  38595151 aaagagtaatgatacataaacacctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacact 38595250  T
Q  336 ttctcttt 343  Q
    ||||||||    
T  38595251 ttctcttt 38595258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 2581910 - 2582007
Alignment:
Q  234 ttaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 331  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  2581910 ttaaagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 2582007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 3000319 - 3000423
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||||||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | ||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 3000418  T
Q  339 tcttt 343  Q
    |||||    
T  3000419 tcttt 3000423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 50591100 - 50591061
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  50591100 gagttatgatacataaacacccttaggtggcaatacaccc 50591061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 349
Target Start/End: Complemental strand, 51898784 - 51898673
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatttt 337  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||||| | |||    
T  51898784 agagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 51898685  T
Q  338 ctctttcatctc 349  Q
    || |||| ||||    
T  51898684 ctatttcctctc 51898673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 5959103 - 5959062
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacacc 277  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  5959103 aaagagttatgatacataaacacccttaagtggcaatacacc 5959062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 27564780 - 27564731
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| |||||||||||| |||||||||||| | |||||||||    
T  27564780 aaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttt 27564731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 32813244 - 32813289
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||    
T  32813244 aaagagttatgatacatagacatccttaggtggcaatacacccttt 32813289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 47748443 - 47748484
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctt 280  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  47748443 gagttatgatacataaatacccttaggtggcaatacaccctt 47748484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 9474976 - 9474872
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||| || | ||||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacactttc 9474877  T
Q  339 tcttt 343  Q
    |||||    
T  9474876 tcttt 9474872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 47452420 - 47452316
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||            ||||||| |||| || |||||||||||||||||||||| | ||||    
T  47452420 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacactttc 47452321  T
Q  339 tcttt 343  Q
    |||||    
T  47452320 tcttt 47452316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 41608593 - 41608554
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccc 41608554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 23597195 - 23597149
Alignment:
Q  235 taaagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||||||| |||||||||| ||| |||||||||||||||||| ||||    
T  23597195 taaagagtaatgatacatagacatcattaggtggcaatacactcttt 23597149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 38632423 - 38632329
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 331  Q
    |||||| |||||||||| ||||| ||||||||||||||||| |||            |||||||||||| || ||||||||| ||||||||||||    
T  38632423 aagagtaatgatacatagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 38632329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 44548421 - 44548372
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  44548421 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 44548372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 50630513 - 50630562
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  50630513 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 50630562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 16383374 - 16383416
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  16383374 aaagagttatgatacataaacacccttaggtggcaatacaccc 16383416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 30479574 - 30479532
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacacccttt 30479532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 34307214 - 34307255
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  34307214 aagagttatgatacataaacacccttaggtggcaatacaccc 34307255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 349
Target Start/End: Original strand, 37038469 - 37038589
Alignment:
Q  229 aaaaattaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaa 328  Q
    |||||| | ||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||    
T  37038469 aaaaataatagagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaa 37038568  T
Q  329 gcatattttctctttcatctc 349  Q
    ||| | ||||| |||| ||||    
T  37038569 gcacactttctatttcctctc 37038589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 24307626 - 24307665
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaataca 275  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  24307626 aaagagttatgatacataaacacccttaggtggcaataca 24307665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 24307895 - 24307857
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaataca 275  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  24307895 aagagttatgatacataaacacccttaggtggcaataca 24307857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 32032724 - 32032766
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccctt 280  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  32032724 agagttatgatacataaacacccttaggtggcaatacatcctt 32032766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 12831047 - 12831151
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| ||||||| |||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 12831146  T
Q  339 tcttt 343  Q
    |||||    
T  12831147 tcttt 12831151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 15197333 - 15197437
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||  |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  15197333 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 15197432  T
Q  339 tcttt 343  Q
    |||||    
T  15197433 tcttt 15197437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 34012396 - 34012292
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||            ||||| |||||| || |||||||||||||||||||||| | ||||    
T  34012396 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttc 34012297  T
Q  339 tcttt 343  Q
    |||||    
T  34012296 tcttt 34012292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 5957885 - 5957940
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctctttcatctc 349  Q
    |||||||||||| || ||||||||||||||||||| || | |||||||||| ||||    
T  5957885 aaaatctgacacgtagtcacgtggatcccgcacaatcacactttctctttcctctc 5957940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 343
Target Start/End: Original strand, 14547920 - 14548026
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 336  Q
    |||||| | |||||||| ||||| ||||||||||||||||| |||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  14547920 aagagtaaagatacatagacacccttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 14548019  T
Q  337 tctcttt 343  Q
    |||||||    
T  14548020 tctcttt 14548026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 15048281 - 15048239
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  15048281 gagttatgatacatagacatccttaggtggcaatacacccttt 15048239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 9122240 - 9122289
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||  || |||||||||||||||||||||| | |||||||||    
T  9122240 aaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttt 9122289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 44507132 - 44507083
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || ||||||||| |||| ||||||||| |||||||||    
T  44507132 aaaatctgacacgtagtcacgtggaccccgtacaagcatactttctcttt 44507083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 4854965 - 4854921
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||||| |||||||||| ||| | |||||||||||||||||||||    
T  4854965 aagagtaatgatacatagacatccttaggtggcaatacacccttt 4854921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 3921368 - 3921326
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  3921368 aaagagttatgatacataaacacccttaggtggcaatacaccc 3921326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 36733044 - 36732938
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 336  Q
    |||||| |||||||||| ||||| |||||| ||||||||||||||            ||||||||||||||| ||||||||| |||||||||||| | ||    
T  36733044 aagagtaatgatacatagacacccttaggtagcaatacaccctttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacactt 36732945  T
Q  337 tctcttt 343  Q
    |||||||    
T  36732944 tctcttt 36732938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 343
Target Start/End: Original strand, 2740273 - 2740378
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatttt 337  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||||| | |||    
T  2740273 agagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 2740372  T
Q  338 ctcttt 343  Q
    ||||||    
T  2740373 ctcttt 2740378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 349
Target Start/End: Complemental strand, 18520979 - 18520874
Alignment:
Q  244 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  18520979 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 18520880  T
Q  344 catctc 349  Q
     |||||    
T  18520879 tatctc 18520874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 40145407 - 40145511
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  40145407 gagtaatgatacatagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 40145506  T
Q  339 tcttt 343  Q
    |||||    
T  40145507 tcttt 40145511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 2252269 - 2252229
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  2252269 agagttatgatacataaacatccttaggtggcaatacaccc 2252229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 14831814 - 14831906
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 331  Q
    |||| |||||||||| ||||  |||||||||||||||||||||            |||||||||||| || ||||||||||||||||||||||    
T  14831814 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagca 14831906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 33149738 - 33149634
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||            ||||| |||||| || |||||||||||||||||||||| | ||||    
T  33149738 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttc 33149639  T
Q  339 tcttt 343  Q
    |||||    
T  33149638 tcttt 33149634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 28177770 - 28177817
Alignment:
Q  234 ttaaagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||| ||||||||||||||| ||| | |||||||||||||||||||||    
T  28177770 ttaatgagttatgatacatagacatccttaggtggcaatacacccttt 28177817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 26720516 - 26720558
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  26720516 gagttatgatacatagacatccttaggtggcaatacacccttt 26720558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 26990265 - 26990307
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  26990265 gagttatgatacatagacatccttaggtggcaatacacccttt 26990307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 31009043 - 31009093
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctctttc 344  Q
    |||||||||||| || |||||||||||||||||||||| | ||||| ||||    
T  31009043 aaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttc 31009093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 35943992 - 35943882
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    ||||||||||||||| ||||| ||||||||||||||| | |||            |||||||||||| || | ||||||||||| |||||||| | ||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagcacactttc 35943893  T
Q  339 tctttcatctc 349  Q
    |||||| ||||    
T  35943892 tctttcctctc 35943882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 39688999 - 39688961
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaataca 275  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  39688999 aagagttatgatacataaacacccttaagtggcaataca 39688961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 42414402 - 42414360
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||| |||||||||| |||||| ||||||||||||||||||||    
T  42414402 gagtaatgatacatagacaccagtaggtggcaatacacccttt 42414360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 36875698 - 36875661
Alignment:
Q  244 atgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  36875698 atgatacatagacacccttaggtggcaatacacccttt 36875661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 13811707 - 13811755
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctctt 342  Q
    |||||||||||| || ||||||||| |||||||||||| | ||||||||    
T  13811707 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctctt 13811755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 19670819 - 19670777
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  19670819 aaagagttatgatacataaacacccttaggtggcaatacaccc 19670777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 50052531 - 50052418
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 335  Q
    ||||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | |    
T  50052531 aaagagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacact 50052432  T
Q  336 ttctctttcatctc 349  Q
    ||||||||| ||||    
T  50052431 ttctctttcctctc 50052418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 6034044 - 6034148
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||  || |||||||||||||||||||||| | ||||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttc 6034143  T
Q  339 tcttt 343  Q
    |||||    
T  6034144 tcttt 6034148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 11511562 - 11511458
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 11511463  T
Q  339 tcttt 343  Q
    |||||    
T  11511462 tcttt 11511458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 55475189 - 55475233
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  55475189 aagagttatgatacataaacatccttaggtggcaatacacccttt 55475233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 29234356 - 29234241
Alignment:
Q  226 attaaaaattaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgca 325  Q
    |||||||||||  |||| |||||||||| ||||| |||| ||||||||||||||||            |||||||||||| || ||||||||| ||||||    
T  29234356 attaaaaatta--gagtaatgatacatagacacccttagatggcaatacaccctttgataccttcacaaaaatctgacacgtagtcacgtggaccccgca 29234259  T
Q  326 caagcatattttctcttt 343  Q
    |||||| | |||||||||    
T  29234258 caagcacactttctcttt 29234241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 44536846 - 44536804
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccctt 280  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  44536846 agagttatgatacataaacacttttaggtggcaatacaccctt 44536804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 48183151 - 48183045
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 336  Q
    |||||| |||||||||| ||||| ||| |||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  48183151 aagagtaatgatacatagacacccttacgtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 48183052  T
Q  337 tctcttt 343  Q
    |||||||    
T  48183051 tctcttt 48183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 55079814 - 55079776
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacacc 277  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacc 55079776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 344
Target Start/End: Original strand, 3481654 - 3481759
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||||||||||||||| ||||            ||||||||||||||| ||||||||| ||| |||||||| | ||||    
T  3481654 gagtaatgatacatagacacctttaggtggcaatacactctttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagcacactttc 3481753  T
Q  339 tctttc 344  Q
    ||||||    
T  3481754 tctttc 3481759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 29548076 - 29548023
Alignment:
Q  222 aaccattaaaaattaaagagttatgatacataaacaccattaggtggcaataca 275  Q
    ||||| || ||||| ||||||||||||||||||||| | |||||||||||||||    
T  29548076 aaccactataaatttaagagttatgatacataaacatccttaggtggcaataca 29548023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 32766956 - 32766997
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  32766956 aagagttatgatacataaacactcttaggtggcaatacaccc 32766997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 47986207 - 47986244
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaataca 275  Q
    |||||||||||||||||||||| |||||||||||||||    
T  47986207 agagttatgatacataaacacccttaggtggcaataca 47986244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 41236347 - 41236451
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| ||||||||||||||||| |||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  41236347 gagtaatgatacatagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 41236446  T
Q  339 tcttt 343  Q
    |||||    
T  41236447 tcttt 41236451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 343
Target Start/End: Complemental strand, 480550 - 480443
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 335  Q
    ||||||| |||||||||| ||||| ||||||| |||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | |    
T  480550 aaagagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacact 480451  T
Q  336 ttctcttt 343  Q
    ||||||||    
T  480450 ttctcttt 480443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 343
Target Start/End: Complemental strand, 42044470 - 42044363
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 335  Q
    ||||||| |||||||||| ||||| ||||||||||||||| ||||             |||||||||||| || ||||||||| |||||||||||| | |    
T  42044470 aaagagtaatgatacatagacacccttaggtggcaatacatccttgtacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacact 42044371  T
Q  336 ttctcttt 343  Q
    ||||||||    
T  42044370 ttctcttt 42044363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 8343263 - 8343221
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||||||||||||||| | ||||||||||||||| |||||    
T  8343263 gagttatgatacataaacatccttaggtggcaatacatccttt 8343221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 29239882 - 29239924
Alignment:
Q  235 taaagagttatgatacataaacaccattaggtggcaatacacc 277  Q
    |||||||| |||||||||| ||||| |||||||||||||||||    
T  29239882 taaagagtaatgatacatagacacccttaggtggcaatacacc 29239924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 24995152 - 24995103
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    ||||| |||||| || ||||||||| |||||||||||| |||||||||||    
T  24995152 aaaatttgacacgtagtcacgtggaccccgcacaagcacattttctcttt 24995103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 50813993 - 50813953
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    |||||||||||||||||||||  |||||||| |||||||||    
T  50813993 agagttatgatacataaacactcttaggtggtaatacaccc 50813953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 350
Target Start/End: Complemental strand, 33436203 - 33436089
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 335  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||            ||||||| |||| || ||||||||| |||||||||||| | |    
T  33436203 aaagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacact 33436104  T
Q  336 ttctctttcatctca 350  Q
    ||||||||| |||||    
T  33436103 ttctctttcctctca 33436089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 343
Target Start/End: Complemental strand, 5574589 - 5574484
Alignment:
Q  238 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatttt 337  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||||| | |||    
T  5574589 agagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 5574490  T
Q  338 ctcttt 343  Q
    ||||||    
T  5574489 ctcttt 5574484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 28863460 - 28863565
Alignment:
Q  244 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  28863460 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 28863559  T
Q  344 catctc 349  Q
     |||||    
T  28863560 tatctc 28863565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 17473020 - 17473124
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 338  Q
    |||| |||||||||| ||||| |||| ||||||||||||||||            |||||||||||| || |||||||||||||||||||||| | ||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 17473119  T
Q  339 tcttt 343  Q
    |||||    
T  17473120 tcttt 17473124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 343
Target Start/End: Original strand, 9058478 - 9058584
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 336  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||| ||||| |||||||||||| | ||    
T  9058478 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactt 9058577  T
Q  337 tctcttt 343  Q
    |||||||    
T  9058578 tctcttt 9058584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 344
Target Start/End: Original strand, 27864699 - 27864809
Alignment:
Q  234 ttaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcata 333  Q
    |||| |||| |||||||||| ||||| ||| |||||||||||||||||            |||||||||||| |||||||||||| |||||| ||||| |    
T  27864699 ttaatgagtaatgatacatagacacccttatgtggcaatacaccctttgacatccacacaaaaatctgacacgtaatcacgtggaccccgcaaaagcaca 27864798  T
Q  334 ttttctctttc 344  Q
     ||||||||||    
T  27864799 ctttctctttc 27864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 343
Target Start/End: Original strand, 30915461 - 30915567
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 336  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | ||    
T  30915461 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacccccacataaaaatctgacacgtagtcacgtggaccccgtacaagcacactt 30915560  T
Q  337 tctcttt 343  Q
    |||||||    
T  30915561 tctcttt 30915567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 43490111 - 43490160
Alignment:
Q  229 aaaaattaaagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    ||||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  43490111 aaaaaataatgagttatgatacataaacacccttaggtgacaatacaccc 43490160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 45097838 - 45097799
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaataca 275  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  45097838 aaagagttatgatacataaacatccttaggtggcaataca 45097799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 10249484 - 10249378
Alignment:
Q  237 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 336  Q
    |||||| |||||||||| ||||| ||||||| ||||||||| |||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  10249484 aagagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 10249385  T
Q  337 tctcttt 343  Q
    |||||||    
T  10249384 tctcttt 10249378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 26891607 - 26891565
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacaccc 278  Q
    ||||||||||||||||||  |||| ||||||||||||||||||    
T  26891607 aaagagttatgatacatagccacccttaggtggcaatacaccc 26891565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 40614002 - 40613960
Alignment:
Q  239 gagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  40614002 gagttatgatacatagacatccttaggtggcaatacacccttt 40613960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 13438398 - 13438447
Alignment:
Q  294 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 343  Q
    |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  13438398 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 13438447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 19930915 - 19930878
Alignment:
Q  244 atgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  19930915 atgatacatagacacccttaggtggcaatacacccttt 19930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 42257185 - 42257229
Alignment:
Q  231 aaattaaagagttatgatacataaacaccattaggtggcaataca 275  Q
    |||| |||||||||||||||||| ||| | |||||||||||||||    
T  42257185 aaataaaagagttatgatacatagacatctttaggtggcaataca 42257229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 10212 - 10167
Alignment:
Q  236 aaagagttatgatacataaacaccattaggtggcaatacacccttt 281  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||    
T  10212 aaagagttatgatacatagacacctttaggtggcaatacatccttt 10167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 349
Target Start/End: Complemental strand, 1035 - 919
Alignment:
Q  233 attaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcat 332  Q
    ||||| |||| |||||||||| ||| | |||||||||||||||||||||            |||| ||||||| || ||||||| ||||||||||||||     
T  1035 attaatgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcac 936  T
Q  333 attttctctttcatctc 349  Q
    | |||||||||| ||||    
T  935 actttctctttcctctc 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 349
Target Start/End: Complemental strand, 1035 - 919
Alignment:
Q  233 attaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcat 332  Q
    ||||| |||| |||||||||| ||| | |||||||||||||||||||||            |||| ||||||| || ||||||| ||||||||||||||     
T  1035 attaatgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcac 936  T
Q  333 attttctctttcatctc 349  Q
    | |||||||||| ||||    
T  935 actttctctttcctctc 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University