View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_18 (Length: 347)
Name: NF20484_low_18
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 53578670 - 53578989
Alignment:
| Q |
8 |
ccaagaatatcgtgcatgggacaaatcaagcacaagaagaaacaaatnnnnnnnttgaaagacatggaagtgaagaaacatgtaaacacttttcaaaaga |
107 |
Q |
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| T |
53578670 |
ccaaaaatatcgtgcatgggacaaatcaagcacaagaagaaacaaataaaaaaatcgaaagacatggaagtgaagaaacatgtaaacacttttcaaaaga |
53578769 |
T |
|
| Q |
108 |
tgttgtttcatgttgggaaaccaaaatctgaaggaagaaggaaatcagatgcatgtgcagttcaagataaaaaatatgcaattgaggaaagagcaacaca |
207 |
Q |
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| T |
53578770 |
tgttgtttcatgttgggaaaccaaaatctgaaggaagaaggaaatcagatgcatgtgcagttcaagataaaaaatatgcaattgaggaaagagcaacaca |
53578869 |
T |
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| Q |
208 |
tgtgagtcaaatgaaacgttttgcaagtggacgtgacacttttgctaattttgattggaaggctcaagtagcaccagaagaaatagataattactattct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53578870 |
tgtgagtcaaatgaaacgttttgcaagtggacgtgacacttttgctaattttgattggaaggctcaagtagcaccagaagaaatagataattactattct |
53578969 |
T |
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| Q |
308 |
gatgaagagagaatgcaaag |
327 |
Q |
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| T |
53578970 |
gatgaagagagaatgcaaag |
53578989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 325
Target Start/End: Complemental strand, 18818544 - 18818419
Alignment:
| Q |
203 |
acacatgtgagtcaaatgaaacgttttgcaagtggacgt---gacacttttgctaattttgattggaaggctcaagtagcaccagaagaaatagataatt |
299 |
Q |
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| T |
18818544 |
acacatgtgagtcgattgaaaagttttgcaagtggttgttgcgacacttttgttagttttgattggaaggctcatgtagttgcagaggaaatatataatt |
18818445 |
T |
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| Q |
300 |
actattctgatgaagagagaatgcaa |
325 |
Q |
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| T |
18818444 |
attatttggatgaagagaggatgcaa |
18818419 |
T |
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