View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20484_low_20 (Length: 307)

Name: NF20484_low_20
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20484_low_20
NF20484_low_20
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-256)||(57284-57539)
[»] chr6 (56 HSPs)
chr6 (1-264)||(28296722-28296985)
chr6 (1-264)||(28515088-28515351)
chr6 (4-255)||(28182057-28182309)
chr6 (1-264)||(28235502-28235765)
chr6 (3-264)||(28326417-28326678)
chr6 (3-264)||(28504053-28504314)
chr6 (1-264)||(28227889-28228152)
chr6 (1-252)||(28243732-28243983)
chr6 (1-264)||(28186330-28186594)
chr6 (1-172)||(29826923-29827094)
chr6 (1-188)||(28097501-28097688)
chr6 (1-150)||(31285496-31285645)
chr6 (11-150)||(27717595-27717734)
chr6 (11-157)||(27610209-27610355)
chr6 (45-150)||(26803427-26803532)
chr6 (89-185)||(26862605-26862701)
chr6 (1-149)||(28240291-28240439)
chr6 (1-176)||(26975888-26976063)
chr6 (1-171)||(26812465-26812635)
chr6 (30-148)||(27679916-27680034)
chr6 (1-150)||(26885007-26885156)
chr6 (86-150)||(27530397-27530461)
chr6 (1-172)||(26950680-26950851)
chr6 (31-150)||(28793326-28793445)
chr6 (11-126)||(29477185-29477300)
chr6 (91-178)||(29523057-29523144)
chr6 (85-178)||(27215473-27215566)
chr6 (30-159)||(27426699-27426828)
chr6 (5-202)||(28140476-28140673)
chr6 (45-150)||(28782082-28782187)
chr6 (45-150)||(28787219-28787324)
chr6 (85-141)||(25539564-25539620)
chr6 (85-185)||(26647500-26647600)
chr6 (85-185)||(26753468-26753568)
chr6 (85-185)||(27337156-27337256)
chr6 (85-185)||(27397896-27397996)
chr6 (85-172)||(25484080-25484167)
chr6 (30-153)||(26824785-26824908)
chr6 (11-150)||(27592117-27592256)
chr6 (85-176)||(27697656-27697747)
chr6 (85-159)||(25511913-25511987)
chr6 (73-135)||(29843093-29843155)
chr6 (108-170)||(31289313-31289375)
chr6 (85-150)||(25492415-25492480)
chr6 (85-141)||(26056943-26056999)
chr6 (85-141)||(26076913-26076969)
chr6 (102-178)||(26938067-26938143)
chr6 (85-172)||(25580743-25580830)
chr6 (85-172)||(26143889-26143976)
chr6 (1-160)||(26892676-26892835)
chr6 (1-126)||(27576085-27576210)
chr6 (85-150)||(27676716-27676781)
chr6 (101-186)||(28479525-28479610)
chr6 (101-186)||(29791980-29792065)
chr6 (85-157)||(26656986-26657058)
chr6 (85-157)||(26762957-26763029)
[»] scaffold0038 (4 HSPs)
scaffold0038 (1-264)||(35664-35927)
scaffold0038 (1-264)||(28387-28650)
scaffold0038 (1-252)||(43894-44145)
scaffold0038 (1-149)||(40453-40601)
[»] chr2 (2 HSPs)
chr2 (1-202)||(3280596-3280797)
chr2 (2-193)||(17992268-17992459)
[»] chr4 (5 HSPs)
chr4 (1-174)||(5090022-5090195)
chr4 (31-153)||(18723174-18723296)
chr4 (30-159)||(18074727-18074856)
chr4 (86-123)||(7827978-7828015)
chr4 (78-150)||(18654569-18654641)
[»] chr5 (1 HSPs)
chr5 (1-259)||(16691804-16692062)
[»] scaffold0349 (1 HSPs)
scaffold0349 (11-150)||(2635-2774)
[»] chr8 (2 HSPs)
chr8 (100-187)||(16441092-16441179)
chr8 (69-157)||(29272927-29273015)
[»] chr1 (4 HSPs)
chr1 (30-153)||(267433-267556)
chr1 (1-187)||(26136825-26137011)
chr1 (85-150)||(28126771-28126836)
chr1 (85-150)||(28163472-28163537)
[»] scaffold0419 (1 HSPs)
scaffold0419 (45-150)||(8468-8573)
[»] scaffold0277 (2 HSPs)
scaffold0277 (45-150)||(12771-12876)
scaffold0277 (31-157)||(3801-3927)
[»] scaffold0003 (1 HSPs)
scaffold0003 (30-159)||(60535-60664)


Alignment Details
Target: scaffold0019 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 57539 - 57284
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||  |||||||||| || ||||||||||||||||||    
T  57539 aattccaatcataaagcaaaggcttcaccgaaagaaggttttgttgattctcgatgatgttcacgagctgaagcaattacaggttttggctggaggactt 57440  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  57439 gattggtttggtcctggtagtaaagtgatcattaccactcgagacgaacaattgctagcaggtcatgggattgaaagagcatatgaaatagataagttaa 57340  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtc 256  Q
    ||    | |||||| ||||||| |||| ||||||||||||| ||||||||||||||    
T  57339 atgagaaagaagctcttgaattgttgaggtggaatgctttcaaaaataacaaagtc 57284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 56)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 28296985 - 28296722
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||    
T  28296985 aattccaatcataaagcaaaggcttcaccgaaagaaggttttgttgattctagatgatgttcatgaactgaagcaattgcaagttttggctggacgactt 28296886  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    ||||||||||||| ||| |||| |||||| |||||||||| ||| ||| |||||||||  | |||||||||||||||||||||||||||| |||||||||    
T  28296885 gattggtttggtcttggaagtaaagtgatcattaccactcaagaaaaaaaattgctagatggtcatgggattgaaagagcatatgaaatacataagttaa 28296786  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgatacaaa 264  Q
    ||  | | |||||| ||||||| ||||  |||||||||||| ||||||||||||||||||||||    
T  28296785 atgacaaagaagctcttgaattgttgagatggaatgctttcaaaaataacaaagtcgatacaaa 28296722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 28515088 - 28515351
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||    
T  28515088 aattccaatcataaagcaaaggcttcaccgaaagaaggttttgttgattctagatgatgttcatgaactgaagcaattgcaagttttggctggacgactt 28515187  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    ||||||||||||| ||| |||| |||||| |||||||||| ||| ||| |||||||||  | |||||||||||||||||||||||||||| |||||||||    
T  28515188 gattggtttggtcttggaagtaaagtgatcattaccactcaagaaaaaaaattgctagatggtcatgggattgaaagagcatatgaaatacataagttaa 28515287  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgatacaaa 264  Q
    ||  | | |||||| ||||||| ||||  |||||||||||| ||||||||||||||||||||||    
T  28515288 atgacaaagaagctcttgaattgttgagatggaatgctttcaaaaataacaaagtcgatacaaa 28515351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 255
Target Start/End: Original strand, 28182057 - 28182309
Alignment:
Q  4 tccaatcataaa-gcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttga 102  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  28182057 tccaatcataaaagcaaaggcttcaccgaaagaaggttctattgattctagatgatgttcacgaactgaagcaattgcaggttttggctggaggaattga 28182156  T
Q  103 ttggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaaat 202  Q
    |||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  28182157 ttggtttggtcctggtagtaaagtgatcattaccactcgagacgaacaattgctagtaggtcatgggattgaaagagcatatgaaatagataagttaaat 28182256  T
Q  203 ttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagt 255  Q
        | |||||| ||||||| |||| ||||  ||||||| ||| |||||||||    
T  28182257 gagaaagaagctcttgaattgttgaggtggtctgctttcaaaattaacaaagt 28182309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 28235502 - 28235765
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||| |||| | ||    
T  28235502 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgttgattctagatgatgttcacgaactaaagcaattgcaggttttggcgggagaaatt 28235601  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||  |||||||||||||||| | || ||||||||||||||||    
T  28235602 gattggtttggtcctggaagtaaagtgatcattaccactcgagacaaacaattgctagcaagtcatgggattgaaagaacgtacgaaatagataagttaa 28235701  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgatacaaa 264  Q
    ||    | |||||| ||||||| |||| |||||| |||||  || ||||||| |||||| ||||    
T  28235702 atgagaacgaagctcttgaattgttgaggtggaaggctttaaaatataacaaggtcgattcaaa 28235765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 264
Target Start/End: Original strand, 28326417 - 28326678
Alignment:
Q  3 ttccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttga 102  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  28326417 ttccaatcataaagcaaaggcttcaccgaaagaaggttctgttgattctcgatgatgttcacgaactgaagcaattgcaggttttggctggaggacttga 28326516  T
Q  103 ttggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaaat 202  Q
    |||||| |||||||| |||||||||||  ||||||||||||||||||| ||||||  |  ||| |||||||||||||||||||||||   |||||| |||    
T  28326517 ttggttcggtcctggcagtagagtgatcgttaccactcgagacaaacatttgctaaaaagtcacgggattgaaagagcatatgaaattcctaagtt-aat 28326615  T
Q  203 ttcga-tgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgatacaaa 264  Q
    |  ||  |||||| ||||||| |||| ||||||| ||||| ||||||||||||||||| ||||    
T  28326616 taagagagaagctcttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaa 28326678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 264
Target Start/End: Original strand, 28504053 - 28504314
Alignment:
Q  3 ttccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttga 102  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  28504053 ttccaatcataaagcaaaggcttcaccgaaagaaggttctgttgattctcgatgatgttcacgaactgaagcaattgcaggttttggctggaggacttga 28504152  T
Q  103 ttggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaaat 202  Q
    |||||| |||||||| |||||||||||  ||||||||||||||||||| ||||||  |  ||| |||||||||||||||||||||||   |||||| |||    
T  28504153 ttggttcggtcctggcagtagagtgatcgttaccactcgagacaaacatttgctaaaaagtcacgggattgaaagagcatatgaaattcctaagtt-aat 28504251  T
Q  203 ttcga-tgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgatacaaa 264  Q
    |  ||  |||||| ||||||| |||| ||||||| ||||| ||||||||||||||||| ||||    
T  28504252 taagagagaagctcttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaa 28504314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 28227889 - 28228152
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||| || ||||||||||||||||||||||||| |||||  ||||||| |||||||||||| || | ||||||||||  ||||||||||||||||||    
T  28227889 aattccagtcttaaagcaaaggcttcaccgaaagaaagttctattgattctcgatgatgttcacaaactaaagcaattgcgggttttggctggaggactt 28227988  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  28227989 gattggtttggtcctggaagtaaagtgatcattaccactcgaaacaaacaattgctagcaagtcatgggattgaaagagcatatgaaatagataagttaa 28228088  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgatacaaa 264  Q
    ||    | |||||| |||||||  ||| |||||| |||||| || ||||||  |||||| ||||    
T  28228089 atgagaacgaagctcttgaattgatgaggtggaacgctttcaaatataacatggtcgattcaaa 28228152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 28243732 - 28243983
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||    
T  28243732 aattccaataataaagaaaaggcttcaccgaaacaaggttctgctaattctcgatgatgttcacgaactgaagcaattgcaggttttagctggaggactt 28243831  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||| ||| ||||||  |  ||||||||||||||||||||||||| ||  ||||||||    
T  28243832 gattggttcggtcctggtagtagagtgatcgttaccactcgagacagacatttgctaaaaagtcatgggattgaaagagcatatgaattacctaagttaa 28243931  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaa 252  Q
    ||      |||||| ||||||| |||| ||||||| ||||| ||||||||||    
T  28243932 atgagaccgaagctcttgaattgttgaggtggaattctttcaaaaataacaa 28243983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 28186330 - 28186594
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaa-ttgcatgttttggctggaggact 99  Q
    ||||||||||||| || |||||||||||| |||||||||| || ||||||| ||||||||||||||| | |||| | ||| | ||||||||||||||| |    
T  28186330 aattccaatcatagagaaaaggcttcaccaaaagaaggttttgttgattctcgatgatgttcacgaactaaagccagttggaagttttggctggaggatt 28186429  T
Q  100 tgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagtta 199  Q
    |  ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||| || || ||||||||    
T  28186430 tcgttggtttggtcctggtagtattgtgatcattaccactcgagacaaacaattgctagctcatcatgggattgaaagagcatataaattacataagtta 28186529  T
Q  200 aatttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgatacaaa 264  Q
    |||    | |||||| ||||||| |||| |||||| |||||  ||||||||||||| ||||||||    
T  28186530 aatgagaaagaagctcttgaattgttgacgtggaaggctttaaaaaataacaaagttgatacaaa 28186594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 29826923 - 29827094
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||| ||||||||||||||    |||||||| || ||  ||||||| || || ||| || | |||| ||||||||| ||| |||| |||||||||    
T  29826923 aattccaataataaagcaaaggctaggacgaaagaaagtacttttgattcttgacgacgttgacaacatgaggcaattgcaagttatggcgggaggactt 29827022  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggatt 172  Q
    ||||||||||||||||| || | |||||| ||||||||||||||| |||| |||||| ||  ||||||||||    
T  29827023 gattggtttggtcctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 29827094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 28097688 - 28097501
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||||||||| |||||||| || | ||||||||||||  ||||||| || ||  || |  || |||||||  |||| | | ||||||||||   |    
T  28097688 aattccaatcataaaacaaaggctacaacaaaagaaggttctattgattctcgacgacattaataaattgaagcagctgcaagctatggctggagggact 28097589  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaa 188  Q
    |||||||||||| |||| |||||||||||| ||||||||||||| ||| | |||||||||  |||||||||||||  | |||||||||    
T  28097588 gattggtttggtgctggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaa 28097501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 31285496 - 31285645
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||||||||| ||| |||||||     |||||||| ||||  ||||||| ||||||||| || | ||||| ||| |||||| ||||||||||||||||    
T  31285496 aattccaatcattaaggaaaggctatgtagaaagaagattcttttgattctcgatgatgttgacaatatgaatcaactgcatgctttggctggaggactt 31285595  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    |||||||| || | ||| || ||||| || ||||||||||||||||||||    
T  31285596 gattggttcggccgtggaagcagagtcatcattaccactcgagacaaaca 31285645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 27717734 - 27717595
Alignment:
Q  11 ataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttg 110  Q
    |||||| ||||||| ||  |||||||||||||  ||||||| ||||||||| || | ||||||||| | |||| |||||||||||||| ||||||||| |    
T  27717734 ataaaggaaaggctacatagaaagaaggttcttttgattcttgatgatgttgacaatatgaagcaactacatgctttggctggaggacctgattggttcg 27717635  T
Q  111 gtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    | | ||| || | ||| || ||||||||||||||||||||    
T  27717634 gccgtggaagcaaagtcatcattaccactcgagacaaaca 27717595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 27610355 - 27610209
Alignment:
Q  11 ataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttg 110  Q
    |||||| ||||||| ||  |||||||||||||  ||||||| ||||||||| || | ||||||||| | |||| |||||||||||||| ||||||||| |    
T  27610355 ataaaggaaaggctacatagaaagaaggttcttttgattcttgatgatgttgacaatatgaagcaactacatgctttggctggaggacctgattggttcg 27610256  T
Q  111 gtcctggtagtagagtgattattaccactcgagacaaacaattgcta 157  Q
    | | ||| || | ||| || ||| |||||||||||||||| ||||||    
T  27610255 gccgtggaagcaaagtcatcattgccactcgagacaaacacttgcta 27610209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 26803427 - 26803532
Alignment:
Q  45 tgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgaga 144  Q
    ||||||| ||||||||| |||| ||| ||||| | |||| |||||||||||||| |||||||||||| | ||| || || || || ||||||||||||||    
T  26803427 tgattctcgatgatgttgacgatatggagcaactacatgctttggctggaggacctgattggtttggccatggaagcagggtcatcattaccactcgaga 26803526  T
Q  145 caaaca 150  Q
    ||||||    
T  26803527 caaaca 26803532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 26862605 - 26862701
Alignment:
Q  89 gctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatg 185  Q
    ||||||||||||||||||||||||| ||| |||||||| || |||||||||||||| ||||| || ||| ||   |||||||| |||||| ||||||    
T  26862605 gctggaggacttgattggtttggtcatggaagtagagtcatcattaccactcgagataaacacttactaacatgccatgggatagaaagaacatatg 26862701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 28240291 - 28240439
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||| |||||||||||||  || ||||  ||||| |||||  ||||||||||| || |  | ||| |||||||| |||| | |||||||||||| |||    
T  28240291 aattcctatcataaagcaaatcctacaccataagaatgttcttttgattctagataatatggatgaactgaagcaactgcagggtttggctggagggctt 28240390  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaac 149  Q
    ||||||||  ||||||  || ||||| || |||||||||||||||||||    
T  28240391 gattggttcagtcctgacagcagagtcatcattaccactcgagacaaac 28240439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 26975888 - 26976063
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||||||||| | ||||||  | |  ||||| ||| || ||||||| |||||  || || |||| ||||||||||| ||||||   ||||  | |    
T  26975888 aattccaatcataaaacgaaggctatatcagaagaaagttttgttgattctcgatgacattgacaaaataaagcaattgcaggttttgatcggagagcct 26975987  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaa 176  Q
    | |||| |||||| ||| || ||||| || ||||||||||||||||||||||||||| ||| |||| |||||||||    
T  26975988 ggttggcttggtcatggcagcagagtcatcattaccactcgagacaaacaattgctatcaggtcatcggattgaaa 26976063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 26812465 - 26812635
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||||||||||||  | ||||| || | |||||| ||| || ||||||| ||||||||| || ||   ||||||||| | ||||||| |||||  | |    
T  26812465 aattccaatcataaaagataggctgcatcaaaagaaagttttgttgattctcgatgatgttgacaaaccaaagcaattgaaggttttggttggagagcct 26812564  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggat 171  Q
    | |||| | |||||||| |||||||| || |||||||||||||||| ||| |||||| ||  |||||||||    
T  26812565 ggttggctcggtcctggaagtagagtcatcattaccactcgagacagacatttgctatcatgtcatgggat 26812635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 27679916 - 27680034
Alignment:
Q  30 gaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgat 129  Q
    |||||||| ||||  ||||||| ||||||||| || |  |||||||| |||||| |||||||||||||||||||||||| ||   ||| || ||||| ||    
T  27679916 gaaagaagattcttttgattctcgatgatgttgacaatttgaagcaactgcatgctttggctggaggacttgattggttcggatgtggaagcagagtcat 27680015  T
Q  130 tattaccactcgagacaaa 148  Q
     |||||||||||| |||||    
T  27680016 cattaccactcgaaacaaa 27680034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 26885007 - 26885156
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||| |||||||| |||| || ||  |||||||| ||||  ||||||| ||||||||| || ||||| ||||  |  | | ||||||||||||||||    
T  26885007 aattccactcataaaggaaagactacatagaaagaagattcttttgattcttgatgatgttgacaaaatggagcagctagaggctttggctggaggactt 26885106  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    ||||||||||||| ||| || || || || ||||||||||| || |||||    
T  26885107 gattggtttggtcgtggaagcagggtcatcattaccactcgtgataaaca 26885156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 27530461 - 27530397
Alignment:
Q  86 ttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    ||||||||||||||||||||||| |||||||| |||||||| || ||||| |||||| |||||||    
T  27530461 ttggctggaggacttgattggttcggtcctgggagtagagtcatcattactactcgaaacaaaca 27530397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 26950680 - 26950851
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||||||||| | ||||||  | |  ||||| ||| || ||||||| ||||||||| || |||| ||||||||||| ||||||  |||||  | |    
T  26950680 aattccaatcataaaacgaaggctatatcagaagaaagttttgttgattctcgatgatgttgacaaaataaagcaattgcaggttttgattggagagcct 26950779  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggatt 172  Q
    | |||| |||||| ||| || ||||| || ||||||||||| |||||||| ||| || ||  ||||||||||    
T  26950780 ggttggcttggtcgtggcagcagagtcatcattaccactcgtgacaaacatttgttatcatgtcatgggatt 26950851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 150
Target Start/End: Original strand, 28793326 - 28793445
Alignment:
Q  31 aaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgatt 130  Q
    ||||||| ||||  ||||||| ||||||||| |||| ||||||||| | |||| |||||| ||||||| ||||||||| || | ||| || || || ||     
T  28793326 aaagaagattcttttgattctcgatgatgttgacgatatgaagcaactacatgctttggcaggaggacctgattggttcggccgtggaagcagggtcatc 28793425  T
Q  131 attaccactcgagacaaaca 150  Q
    ||||| ||||||||||||||    
T  28793426 attacgactcgagacaaaca 28793445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 29477300 - 29477185
Alignment:
Q  11 ataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttg 110  Q
    |||||||| |||||  |||||||||| ||||| || || |||||||||||  ||  | |  ||||| || | | ||||||||||||||||||||||||||    
T  29477300 ataaagcacaggctctaccgaaagaaagttcttctcatcctagatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttg 29477201  T
Q  111 gtcctggtagtagagt 126  Q
    |||||||||| |||||    
T  29477200 gtcctggtagcagagt 29477185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 29523057 - 29523144
Alignment:
Q  91 tggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaaga 178  Q
    |||||||  ||||||||||||| ||||||| ||||| ||| |||| ||| | |||||||| |||||||||  ||||||||||||||||    
T  29523057 tggaggaactgattggtttggttctggtagcagagttattgttacaacttgcgacaaacatttgctagcatttcatgggattgaaaga 29523144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 27215473 - 27215566
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaaga 178  Q
    ||||||||||||||||||||||||||||  ||| |||||||| || ||||| |||||| ||| ||| || ||| |  |||||||||| ||||||    
T  27215473 tttggctggaggacttgattggtttggtggtggaagtagagtcatcattacgactcgaaacagacagttactaacctatcatgggatagaaaga 27215566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 27426828 - 27426699
Alignment:
Q  30 gaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgat 129  Q
    |||||||| ||||  ||||||| ||||| ||| || | ||||||||| || ||| ||||||||||||| |||||||||| |||||||| ||  |||| ||    
T  27426828 gaaagaagattcttttgattctcgatgacgttgacaatatgaagcaactgaatgctttggctggaggagttgattggttcggtcctggaagccgagtcat 27426729  T
Q  130 tattaccactcgagacaaacaattgctagc 159  Q
     || ||||| ||||| ||||| || |||||    
T  27426728 catcaccacccgagataaacacttactagc 27426699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 28140476 - 28140673
Alignment:
Q  5 ccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgatt 104  Q
    ||||| |||||| ||||||| |  | ||||||||||||  ||||||| ||||| ||| | ||| | || || ||| | |||||||||||||  | | |||    
T  28140476 ccaataataaaggaaaggctacgactaaagaaggttcttttgattctcgatgacgttgatgaactaaaacagttgaaggttttggctggagaccctaatt 28140575  T
Q  105 ggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaaat 202  Q
    || |||||| ||||||| | ||  |  |||| |||||||||||||| |||||||||  |||||||||||| ||| | |||||| |||||  |||||||    
T  28140576 ggcttggtcatggtagtcgggttgtcgttacaactcgagacaaacatttgctagcatgtcatgggattgagagaacttatgaactagatgggttaaat 28140673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 28782082 - 28782187
Alignment:
Q  45 tgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgaga 144  Q
    ||||||| ||||||||| |||| ||| ||||| | |||| |||||| ||||||| ||||||||| || | ||| || || || || ||||||||||||||    
T  28782082 tgattctcgatgatgttgacgatatggagcaactacatgctttggcaggaggacctgattggttcggccgtggaagcagggtcatcattaccactcgaga 28782181  T
Q  145 caaaca 150  Q
    ||||||    
T  28782182 caaaca 28782187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 28787219 - 28787324
Alignment:
Q  45 tgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgaga 144  Q
    ||||||| ||||||||| |||| ||||||||| | |||| |||||| ||||||| ||||||||| || | ||| || || || || ||||| ||||||||    
T  28787219 tgattctcgatgatgttgacgatatgaagcaactacatgctttggcaggaggacctgattggttcggccgtggaagcagggtcatcattacgactcgaga 28787318  T
Q  145 caaaca 150  Q
    ||||||    
T  28787319 caaaca 28787324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 25539564 - 25539620
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcg 141  Q
    |||||||||||||||||||||||| |||||||| || ||||| || |||||||||||    
T  25539564 tttggctggaggacttgattggttcggtcctggaagcagagtcatcattaccactcg 25539620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 26647500 - 26647600
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatat 184  Q
    |||||||||||||||||||||||| |||||||| || ||||| || || ||||| ||||| ||||| || ||| |   ||||||||| |||||| |||||    
T  26647500 tttggctggaggacttgattggttcggtcctggaagcagagtcatcatcaccacccgagataaacacttactaacctgtcatgggatagaaagaacatat 26647599  T
Q  185 g 185  Q
    |    
T  26647600 g 26647600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 26753468 - 26753568
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatat 184  Q
    |||||||||||||||||||||||| |||||||| || ||||| || || ||||| ||||| ||||| || ||| |   ||||||||| |||||| |||||    
T  26753468 tttggctggaggacttgattggttcggtcctggaagcagagtcatcatcaccacccgagataaacacttactaacctgtcatgggatagaaagaacatat 26753567  T
Q  185 g 185  Q
    |    
T  26753568 g 26753568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 27337256 - 27337156
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatat 184  Q
    |||||||||||||||||||||||| |||||||| || ||||| || || ||||| ||||| ||||| || ||| |   ||||||||| |||||| |||||    
T  27337256 tttggctggaggacttgattggttcggtcctggaagcagagtcatcatcaccacccgagataaacacttactaacctgtcatgggatagaaagaacatat 27337157  T
Q  185 g 185  Q
    |    
T  27337156 g 27337156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 27397996 - 27397896
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatat 184  Q
    |||||||||||||||||||||||| |||||||| || ||||| || || ||||| ||||| ||||| || ||| |   ||||||||| |||||| |||||    
T  27397996 tttggctggaggacttgattggttcggtcctggaagcagagtcatcatcaccacccgagataaacacttactaacctgtcatgggatagaaagaacatat 27397897  T
Q  185 g 185  Q
    |    
T  27397896 g 27397896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 25484080 - 25484167
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggatt 172  Q
    |||||||||||||||||||||||| |||| ||| || ||||| || ||||||||||| || ||||| || |||||   ||||||||||    
T  25484080 tttggctggaggacttgattggttcggtcatggaagcagagtcatcattaccactcgtgataaacacttactagcctgtcatgggatt 25484167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 26824785 - 26824908
Alignment:
Q  30 gaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgat 129  Q
    ||||||| ||||| |||||||| |||||  || || || || ||||| |  ||| ||||||||||||| |||||||||| |||  ||| || ||||| ||    
T  26824785 gaaagaaagttcttctgattctcgatgacattgacaaactggagcaactagatgctttggctggaggatttgattggttcggtaatggcagcagagtcat 26824884  T
Q  130 tattaccactcgagacaaacaatt 153  Q
     ||||| |||||||||||||||||    
T  26824885 cattacaactcgagacaaacaatt 26824908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 27592256 - 27592117
Alignment:
Q  11 ataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttg 110  Q
    |||||| ||||||| ||  |||||||| ||||  ||||||| ||||||||| || || || | ||  |  ||| |||||||||||||||||||||||| |    
T  27592256 ataaaggaaaggctacatggaaagaagattcttttgattcttgatgatgttgacaaactggatcagctagatgctttggctggaggacttgattggttcg 27592157  T
Q  111 gtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    ||||||| || ||||| || || ||||| ||||| |||||    
T  27592156 gtcctggaagcagagtcatcatcaccacccgagataaaca 27592117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 27697747 - 27697656
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaa 176  Q
    ||||||||||||||| ||||||||||||||||| || ||||| || || ||||| ||||| ||||| || ||||   |||||||||| ||||    
T  27697747 tttggctggaggactcgattggtttggtcctggaagcagagtcatcatcaccacccgagataaacacttactagaccatcatgggatagaaa 27697656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 25511913 - 25511987
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagc 159  Q
    |||||||||||||||||| ||||| |||||||| || ||||| || ||||||||||| || ||||| || |||||    
T  25511913 tttggctggaggacttgactggttcggtcctggaagcagagtcatcattaccactcgtgataaacacttactagc 25511987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 29843155 - 29843093
Alignment:
Q  73 gcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgattattac 135  Q
    ||||||||| ||| |||| || |||||||| ||||||||||||||||| |||||||| |||||    
T  29843155 gcaattgcaagttatggcgggcggacttgactggtttggtcctggtagcagagtgatcattac 29843093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 31289313 - 31289375
Alignment:
Q  108 ttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatggga 170  Q
    |||||||||| || ||||| || ||||||||| ||||||||||||||||| ||| ||||||||    
T  31289313 ttggtcctggaagcagagtcatcattaccacttgagacaaacaattgctatcaggtcatggga 31289375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 25492480 - 25492415
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    |||||||| ||||||||||||||| |||| ||| ||  |||| || ||||||||||||||||||||    
T  25492480 tttggctgaaggacttgattggttcggtcgtggaagcggagttatcattaccactcgagacaaaca 25492415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 26056943 - 26056999
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcg 141  Q
    |||||||||||||||||||||||| |||| ||| || ||||| || |||||||||||    
T  26056943 tttggctggaggacttgattggttcggtcttggaagcagagtcatcattaccactcg 26056999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 26076913 - 26076969
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcg 141  Q
    |||||||||||||||||||||||| |||| ||| || ||||| || |||||||||||    
T  26076913 tttggctggaggacttgattggttcggtcttggaagcagagtcatcattaccactcg 26076969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 26938067 - 26938143
Alignment:
Q  102 attggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaaga 178  Q
    ||||| |||||| ||| || | ||| ||| ||||||||||||||||||| |||||| ||  ||||||||||||||||    
T  26938067 attggcttggtcatggaagcaaagtcattgttaccactcgagacaaacatttgctatcatgtcatgggattgaaaga 26938143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 25580743 - 25580830
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggatt 172  Q
    |||||||||||||||||||||||| |||| ||| || || || || ||||||||||| || ||||| || |||||   ||||||||||    
T  25580743 tttggctggaggacttgattggttcggtcatggaagcagtgtcatcattaccactcgtgataaacacttactagcctgtcatgggatt 25580830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 26143889 - 26143976
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggatt 172  Q
    |||||||||||||||||||||||| |||| ||| || || || || ||||||||||| || ||||| || |||||   ||||||||||    
T  26143889 tttggctggaggacttgattggttcggtcatggaagcagggtcatcattaccactcgtgataaacacttactagcctgtcatgggatt 26143976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 26892835 - 26892676
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||| ||||||||||  | ||||| || ||||| | ||||||  || || ||||||||||| ||||| | |||||| ||||  |  | ||||| |||||     
T  26892835 aatttcaatcataaaaaagaggctacatcgaaaaagggttctattggttttagatgatgttgacgaattaaagcaactgcaattcattgctggtggactc 26892736  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagca 160  Q
    ||||||||||||  ||||||| |||||||  |||| |||||||||| | | |||||||||    
T  26892735 gattggtttggtattggtagtcgagtgatcgttactactcgagacagaaatttgctagca 26892676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 27576210 - 27576085
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||||||||| |||||||| ||   |||||| ||| || ||||||| ||||||||| || || | ||||| ||||    ||||| |||||  |||    
T  27576210 aattccaatcataaaacaaaggctacatacaaagaaagttttgttgattctcgatgatgttgacaaactaaagcagttgcgaactttggttggagagctt 27576111  T
Q  101 gattggtttggtcctggtagtagagt 126  Q
    | |||| | |||||||||||||||||    
T  27576110 ggttggctcggtcctggtagtagagt 27576085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 27676781 - 27676716
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    |||||||||| |||| ||||||||||||||||| || ||||| || || ||||| ||||| |||||    
T  27676781 tttggctggaagactcgattggtttggtcctggaagcagagtcatcatcaccacccgagataaaca 27676716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 28479610 - 28479525
Alignment:
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatga 186  Q
    |||||||||||||  || |||||||| || || || ||||| ||||||   |||||| || ||||||||||||||||| |||||||    
T  28479610 gattggtttggtctaggaagtagagtcatcatcacgactcgggacaaaaggttgctaacatatcatgggattgaaagaacatatga 28479525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 29792065 - 29791980
Alignment:
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatga 186  Q
    |||||||||||||  || |||||||| || || || ||||| ||||||   |||||| || ||||||||||||||||| |||||||    
T  29792065 gattggtttggtctaggaagtagagtcatcatcacgactcgggacaaaaggttgctaacatatcatgggattgaaagaacatatga 29791980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 26656986 - 26657058
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgcta 157  Q
    |||||| ||||||||||||||||| |||  ||| || ||||| || ||||||||| |||| ||||| ||||||    
T  26656986 tttggcaggaggacttgattggttcggttgtggaagcagagtcatcattaccactagagataaacacttgcta 26657058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 26762957 - 26763029
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgcta 157  Q
    |||||| ||||||||||||||||| |||  ||| || ||||| || ||||||||| |||| ||||| ||||||    
T  26762957 tttggcaggaggacttgattggttcggttgtggaagcagagtcatcattaccactagagataaacacttgcta 26763029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 35664 - 35927
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||| |||| | ||    
T  35664 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgttgattctagatgatgttcacgaactaaagcaattgcaggttttggcgggagaaatt 35763  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||  |||||||||||||||| | || ||||||||||||||||    
T  35764 gattggtttggtcctggaagtaaagtgatcattaccactcgagacaaacaattgctagcaagtcatgggattgaaagaacgtacgaaatagataagttaa 35863  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgatacaaa 264  Q
    ||    | |||||| ||||||| |||| |||||| |||||  || ||||||| |||||| ||||    
T  35864 atgagaacgaagctcttgaattgttgaggtggaaggctttaaaatataacaaggtcgattcaaa 35927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 28387 - 28650
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||| || ||||||||||||||||||||||||| |||||  ||||||| |||||||||||| || | ||||||||||  ||||||||||||||||||    
T  28387 aattccagtcttaaagcaaaggcttcaccgaaagaaagttctattgattctcgatgatgttcacaaactaaagcaattgcgggttttggctggaggactt 28486  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  28487 gattggtttggtcctggaagtaaagtgatcattaccactcgaaacaaacaattgctagcaagtcatgggattgaaagagcatatgaaatagataagttaa 28586  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgatacaaa 264  Q
    ||    | |||||| |||||||  ||| |||||| |||||| || ||||||  |||||| ||||    
T  28587 atgagaacgaagctcttgaattgatgaggtggaacgctttcaaatataacatggtcgattcaaa 28650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 43894 - 44145
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||    
T  43894 aattccaataataaagaaaaggcttcaccgaaacaaggttctgctaattctcgatgatgttcacgaactgaagcaattgcaggttttagctggaggactt 43993  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||| ||| ||||||  |  ||||||||||||||||||||||||| ||  ||||||||    
T  43994 gattggttcggtcctggtagtagagtgatcgttaccactcgagacagacatttgctaaaaagtcatgggattgaaagagcatatgaattacctaagttaa 44093  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaa 252  Q
    ||      |||||| ||||||| |||| ||||||| ||||| ||||||||||    
T  44094 atgagaccgaagctcttgaattgttgaggtggaattctttcaaaaataacaa 44145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 40453 - 40601
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||| |||||||||||||  || ||||  ||||| |||||  ||||||||||| || |  | ||| |||||||| |||| | |||||||||||| |||    
T  40453 aattcctatcataaagcaaatcctacaccataagaatgttcttttgattctagataatatggatgaactgaagcaactgcagggtttggctggagggctt 40552  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaac 149  Q
    ||||||||  ||||||  || ||||| || |||||||||||||||||||    
T  40553 gattggttcagtcctgacagcagagtcatcattaccactcgagacaaac 40601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 3280596 - 3280797
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||||||||||||||||||||| ||||| || ||||||||  || |||| ||||| ||| ||||| |||||||  |||| || || |||||||| |||    
T  3280596 aattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatgacgttaacgaattgaagcaggtgcaagtcttagctggagggctt 3280695  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    ||||||||| ||  ||||||||| ||||| |||||||||||||||||||| ||| || ||  |||||||||||||  | |||||||||||||| ||||||    
T  3280696 gattggtttagtgttggtagtagggtgatcattaccactcgagacaaacacttgttatcaagtcatgggattgaactaacatatgaaatagatgagttaa 3280795  T
Q  201 at 202  Q
    ||    
T  3280796 at 3280797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 17992459 - 17992268
Alignment:
Q  2 attccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttg 101  Q
    |||||||||||||||||||||||    | |||||| |||||  ||||||| |||||  |  || || | ||||||||||| ||||||| |||||  | ||    
T  17992459 attccaatcataaagcaaaggctatgtcaaaagaaagttctcttgattctcgatgacatcgacaaactaaagcaattgcaggttttggttggagagcctg 17992360  T
Q  102 attggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagat 193  Q
     |||| |||||| ||| || ||||| || |||||||||||||||||||| ||| || ||  |||||||||| ||| |  ||||||| |||||    
T  17992359 gttggcttggtcgtggcagcagagtcatcattaccactcgagacaaacatttgttaacatgtcatgggattaaaacaatatatgaagtagat 17992268  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5090195 - 5090022
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||||||||||||| ||||||| ||  ||||||| |||||  ||||||| |||||| || || || |||| ||| | || |||||||| |||| || |    
T  5090195 aattccaatcataaagaaaaggctacaaagaaagaaagttcttttgattctcgatgatattgacaaactgaaacaactacaggttttggccggagaacct 5090096  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattga 174  Q
    ||||||||||||| ||| || ||||| || |||||||||||||||||||| ||||||  |  ||||||||||||    
T  5090095 gattggtttggtcttggcagcagagtcatcattaccactcgagacaaacacttgctaaaatgtcatgggattga 5090022  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 18723296 - 18723174
Alignment:
Q  31 aaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgatt 130  Q
    ||||||| ||||  ||||||| ||||||||| || |  |||| ||| |||||| |||||||||||||| ||||||||| ||  |||| || ||||| ||     
T  18723296 aaagaagattcttttgattctcgatgatgttgacaatttgaaacaactgcatgctttggctggaggacctgattggttcggctctggaagcagagttatc 18723197  T
Q  131 attaccactcgagacaaacaatt 153  Q
    |||||||||||  ||||||||||    
T  18723196 attaccactcgtaacaaacaatt 18723174  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 18074727 - 18074856
Alignment:
Q  30 gaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgat 129  Q
    |||||||| ||||  ||||||| ||||| ||| || | ||||||||| || ||| ||||||||||||| |||||||||| |||||||| ||  |||| ||    
T  18074727 gaaagaagattcttttgattctcgatgacgttgacaatatgaagcaactgaatgctttggctggaggagttgattggttcggtcctggaagccgagtcat 18074826  T
Q  130 tattaccactcgagacaaacaattgctagc 159  Q
     || ||||| ||||| ||||| || |||||    
T  18074827 catcaccacccgagataaacacttactagc 18074856  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 7827978 - 7828015
Alignment:
Q  86 ttggctggaggacttgattggtttggtcctggtagtag 123  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  7827978 ttggctggaggacgtgattggtttggttctggtagtag 7828015  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 18654641 - 18654569
Alignment:
Q  78 tgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    |||||| |||||||||||||| ||||||||| |||  ||| || ||||| || |||||||||||  |||||||    
T  18654641 tgcatgctttggctggaggacgtgattggttcggttgtggaagcagagttatcattaccactcgtaacaaaca 18654569  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 16691804 - 16692062
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    ||||||||| ||||| |||||||| || | ||| ||||||||  ||||||| ||||||||| | ||    ||||||||||| ||| ||| |||||  |      
T  16691804 aattccaataataaaacaaaggctacaacaaaaaaaggttcttttgattctcgatgatgttgatgagcaaaagcaattgcaagttatggttggagagccc 16691903  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaaatagataagttaa 200  Q
    ||||||||||||||||| |||||||| || |||||||||||||||||||| || ||| ||  |||||| ||||| |||  ||||||| | |||   ||||    
T  16691904 gattggtttggtcctggaagtagagtcatcattaccactcgagacaaacacttactaacaagtcatggtattgatagaatatatgaagtggatggtttaa 16692003  T
Q  201 atttcgatgaagcttttgaattattgatgtggaatgctttcgaaaataacaaagtcgat 259  Q
    ||   || |||||| | ||| |||||| ||||||  ||||  |||||||||||||||||    
T  16692004 atggagaagaagctctagaactattgaggtggaagacttttaaaaataacaaagtcgat 16692062  T

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Target: scaffold0349 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 2774 - 2635
Alignment:
Q  11 ataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttg 110  Q
    |||||| ||||||| ||  |||||||||||||  ||||||| ||||||||| || | ||||||||| | |||| |||||||||||||| ||||||||| |    
T  2774 ataaaggaaaggctacatagaaagaaggttcttttgattcttgatgatgttgacaatatgaagcaactacatgctttggctggaggacctgattggttcg 2675  T
Q  111 gtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    | | ||| || | ||| || ||||||||||||||||||||    
T  2674 gccgtggaagcaaagtcatcattaccactcgagacaaaca 2635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 16441092 - 16441179
Alignment:
Q  100 tgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaa 187  Q
    |||||||| |||||||||||| ||||| || ||||| ||||| |||||||| |||||||||  ||||||| |||||||| ||||||||    
T  16441092 tgattggtatggtcctggtagcagagttatcattacaactcgggacaaacagttgctagcaagtcatggggttgaaagaacatatgaa 16441179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 29273015 - 29272927
Alignment:
Q  69 tgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgcta 157  Q
    |||||||| | |||| |||||||||||||| ||||||||| || | ||| || | ||| || ||||| |||||||||||||| ||||||    
T  29273015 tgaagcaactacatgctttggctggaggacatgattggttcggccgtggaagcaaagtcatcattactactcgagacaaacacttgcta 29272927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 267556 - 267433
Alignment:
Q  30 gaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgat 129  Q
    |||||||| ||||  ||||||| ||||||||| |||| || || |||||||||| |||||||||||||||||||||||| ||   ||| || |||||  |    
T  267556 gaaagaagattcttttgattctcgatgatgttaacgatataaaacaattgcatgctttggctggaggacttgattggttcggctatggaagcagagtcgt 267457  T
Q  130 tattaccactcgagacaaacaatt 153  Q
      |||||||||||||||| |||||    
T  267456 cgttaccactcgagacaagcaatt 267433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 26136825 - 26137011
Alignment:
Q  1 aattccaatcataaagcaaaggcttcaccgaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggactt 100  Q
    |||||||||||||||  ||||||| || | ||||||  || || ||||||| ||||| ||| || |  | ||||| ||||| ||||||| |||||  | |    
T  26136825 aattccaatcataaaagaaaggctacatcaaaagaaaattttgttgattctcgatgacgttgacaagctaaagcagttgcaggttttggttggagagcct 26136924  T
Q  101 gattggtttggtcctggtagtagagtgattattaccactcgagacaaacaattgctagcagatcatgggattgaaagagcatatgaa 187  Q
      |||| |||||||||| |||||||| || |||||||| ||||||||||| |||||| ||  |||||||||| |||||  |||||||    
T  26136925 agttggcttggtcctgggagtagagtcatcattaccacccgagacaaacatttgctatcatgtcatgggattaaaagaatatatgaa 26137011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 28126836 - 28126771
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    |||||||||||||||||||||||| |||| ||| || | ||| || |||||||||||||| |||||    
T  28126836 tttggctggaggacttgattggttcggtcgtggaagcaaagtcatcattaccactcgagagaaaca 28126771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 28163537 - 28163472
Alignment:
Q  85 tttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgagacaaaca 150  Q
    ||||||||||||||| |||||||| |||| ||| || || || || ||||||||||||||||||||    
T  28163537 tttggctggaggactcgattggttcggtcgtggaagcagggtcatcattaccactcgagacaaaca 28163472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 8468 - 8573
Alignment:
Q  45 tgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgaga 144  Q
    ||||||| ||||||||| |||| ||||||||| | |||| |||||| ||||||| ||||||||| || | ||| || || || || ||||||||||||||    
T  8468 tgattctcgatgatgttgacgatatgaagcaactacatgctttggcaggaggacctgattggttcggccgtggaagcagggtcatcattaccactcgaga 8567  T
Q  145 caaaca 150  Q
    ||||||    
T  8568 caaaca 8573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 12876 - 12771
Alignment:
Q  45 tgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgattattaccactcgaga 144  Q
    ||||||| ||||||||| |||| ||||||||| | |||| |||||| ||||||| ||||||||| || | ||| || || || || ||||||||||||||    
T  12876 tgattctcgatgatgttgacgatatgaagcaactacatgctttggcaggaggacctgattggttcggccgtggaagcagggtcatcattaccactcgaga 12777  T
Q  145 caaaca 150  Q
    ||||||    
T  12776 caaaca 12771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 3927 - 3801
Alignment:
Q  31 aaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgatt 130  Q
    ||||||| ||||  ||||||| ||||||||| |||| ||| ||||| | || | |||||| |||| || |||||||||||| | ||| || || || ||     
T  3927 aaagaagattcttttgattctcgatgatgttgacgatatggagcaactacaggctttggcaggagaacctgattggtttggccttggaagcagggtcatc 3828  T
Q  131 attaccactcgagacaaacaattgcta 157  Q
    |||||||||||||||||||| ||||||    
T  3827 attaccactcgagacaaacacttgcta 3801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 60535 - 60664
Alignment:
Q  30 gaaagaaggttctgctgattctagatgatgttcacgaaatgaagcaattgcatgttttggctggaggacttgattggtttggtcctggtagtagagtgat 129  Q
    |||||||| ||||  ||||||| ||||| ||| || | ||||||||| || ||| ||||||||||||| |||||||||| |||||||| ||  |||| ||    
T  60535 gaaagaagattcttttgattctcgatgacgttgacaatatgaagcaactgaatgctttggctggaggagttgattggttcggtcctggaagccgagtcat 60634  T
Q  130 tattaccactcgagacaaacaattgctagc 159  Q
     || ||||| ||||| ||||| || |||||    
T  60635 catcaccacccgagataaacacttactagc 60664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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