View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_21 (Length: 306)
Name: NF20484_low_21
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 54115846 - 54116121
Alignment:
| Q |
1 |
acaattgaatgattggctcatgtgagcttatatatgtgtacaattacttagctataaaacctggttaaataaacagccatacttcgttttaggcattaaa |
100 |
Q |
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| T |
54115846 |
acaattgaatgattggctcatgtgggcttatatatgtgtacaatta----gctataaaacctggttaaataaacagccatacttcgttttaggcattaaa |
54115941 |
T |
|
| Q |
101 |
tttatatgacattaagttgtttgtttatgcaggatttgagcacttgttgggaaaaattgaagttgcaggctgctataattcttactttctttgataattg |
200 |
Q |
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| T |
54115942 |
tttatatgacattaagttgtttgtttatgcaggatttgagcacttgttgggaaaaattgaagttgcaggctgctataattcttactttctttgataattg |
54116041 |
T |
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| Q |
201 |
actggttgatgacagaattctaggagtgatctattaggagtatccatccaaaaatgttgatgaaccacaaatgaagtggc |
280 |
Q |
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| T |
54116042 |
actggttgatgacagaattctaggagtgatctattaggagtatccatccaaaaatgttgatgaaccactaatgaagtggc |
54116121 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 23277261 - 23277164
Alignment:
| Q |
93 |
gcattaaatttatatgacattaagttgtttgtttatgcaggatttgagcacttgttgggaaaaattgaagttgcaggctgctataattcttactttctt |
191 |
Q |
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|||||||| |||||||||||| | |||||||||||||||||||||| ||||| ||| | ||| |||||| |||||||||||| ||||||||||||| |
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| T |
23277261 |
gcattaaaattatatgacatttt-tggtttgtttatgcaggatttgagttcttgtggggtagaatcgaagtttcaggctgctatagttcttactttctt |
23277164 |
T |
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