View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_24 (Length: 285)
Name: NF20484_low_24
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 38561353 - 38561095
Alignment:
| Q |
16 |
cttgtaacatatgacatgatatttagtagatagctggttcattcacaaatattacataagaatgatgaggtgtgtgtgatacgtatagcatttataaagt |
115 |
Q |
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| T |
38561353 |
cttgtaacatatgatatgatatttagtagatagctggttcattcacaaatattacataagaatgatgaggtgtgtgtgatacatatagcatttataaagt |
38561254 |
T |
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| Q |
116 |
aagagtttgagagtgaagtcaaaatgaacatgtcattatgtcaccttcacatcacccattttgcatatatacatgaaaatcttgaattcacgtacacact |
215 |
Q |
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| T |
38561253 |
aagagtttgagagtgaagtcaacatgaacatgtcactatgtcaccttcacagcacccattttgcatatatacatgaaaatcttgaattcacgtacacact |
38561154 |
T |
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| Q |
216 |
tgccttctctctattgtgttgcgtgagtggatatttgttctttgctgtagccacttcat |
274 |
Q |
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| T |
38561153 |
tgccttctctctattgtgttgcgtgagtggatatttgttctttgctgtagccacttcat |
38561095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 38605820 - 38605716
Alignment:
| Q |
39 |
tagtagatagctggttcattcacaaatattacataagaatgatgaggtgtgtgtgatacgtatagcatttataaagtaagagtttgagagtgaagtcaaa |
138 |
Q |
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| T |
38605820 |
tagtaaatagttggttcattcacaaatattccataagagtgatgaggtgtgtgtgatacgtatagcccttataaaggaaaagtttgggagtaaggtcaac |
38605721 |
T |
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| Q |
139 |
atgaa |
143 |
Q |
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| T |
38605720 |
atgaa |
38605716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 38580393 - 38580307
Alignment:
| Q |
168 |
cacccattttgcatatata-catgaaaatcttgaattcacgtacacacttgccttctctctattgtgttgcgtgagtggatatttgtt |
254 |
Q |
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| T |
38580393 |
caccctttttgcatatattgcatgaaaattttga-ttctcgtacacacttgccttctctctgttgtgtcgggtaagtggatatttgtt |
38580307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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