View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20484_low_26 (Length: 280)

Name: NF20484_low_26
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20484_low_26
NF20484_low_26
[»] chr1 (31 HSPs)
chr1 (12-132)||(9474857-9474977)
chr1 (12-131)||(2581915-2582034)
chr1 (12-131)||(3000319-3000438)
chr1 (12-131)||(38595154-38595273)
chr1 (12-131)||(41758805-41758924)
chr1 (12-134)||(27564716-27564838)
chr1 (12-133)||(47452301-47452422)
chr1 (12-132)||(48716263-48716383)
chr1 (12-131)||(38632302-38632421)
chr1 (12-131)||(50630458-50630577)
chr1 (20-131)||(8346377-8346488)
chr1 (12-131)||(32813247-32813366)
chr1 (12-131)||(51898664-51898783)
chr1 (12-128)||(44548357-44548473)
chr1 (20-131)||(43132-43243)
chr1 (12-133)||(37649196-37649317)
chr1 (20-131)||(23597080-23597191)
chr1 (12-111)||(45044541-45044640)
chr1 (27-132)||(50590996-50591101)
chr1 (12-130)||(11152359-11152476)
chr1 (24-101)||(13414791-13414868)
chr1 (27-132)||(41608489-41608594)
chr1 (27-131)||(5958996-5959100)
chr1 (21-133)||(26440732-26440844)
chr1 (21-128)||(26274435-26274542)
chr1 (12-131)||(37926419-37926538)
chr1 (12-131)||(49811508-49811627)
chr1 (12-133)||(6260868-6260989)
chr1 (12-126)||(44453984-44454098)
chr1 (27-133)||(47748441-47748546)
chr1 (31-135)||(3302533-3302637)
[»] chr3 (38 HSPs)
chr3 (12-134)||(53982008-53982130)
chr3 (12-132)||(33644199-33644319)
chr3 (12-126)||(52629305-52629419)
chr3 (20-131)||(49607414-49607525)
chr3 (12-131)||(54868876-54868995)
chr3 (12-131)||(8076393-8076512)
chr3 (12-131)||(24699935-24700054)
chr3 (22-131)||(11095346-11095453)
chr3 (20-130)||(31456690-31456800)
chr3 (12-131)||(17470405-17470524)
chr3 (20-131)||(33118840-33118951)
chr3 (21-127)||(48587081-48587187)
chr3 (14-135)||(26141515-26141636)
chr3 (22-131)||(27714882-27714991)
chr3 (12-131)||(9562999-9563118)
chr3 (14-131)||(41189747-41189864)
chr3 (12-126)||(26754700-26754814)
chr3 (27-131)||(14623835-14623939)
chr3 (12-132)||(20764896-20765016)
chr3 (12-132)||(30801714-30801834)
chr3 (20-131)||(51419349-51419460)
chr3 (12-131)||(36707409-36707524)
chr3 (12-131)||(11347903-11348022)
chr3 (14-131)||(11907371-11907488)
chr3 (50-131)||(35536626-35536707)
chr3 (27-130)||(13898051-13898154)
chr3 (12-131)||(41080709-41080826)
chr3 (20-131)||(47531865-47531976)
chr3 (66-131)||(8956762-8956827)
chr3 (63-132)||(45058585-45058653)
chr3 (12-123)||(39670019-39670130)
chr3 (27-126)||(42823116-42823215)
chr3 (12-131)||(48375687-48375806)
chr3 (12-131)||(1758437-1758558)
chr3 (63-131)||(36331410-36331478)
chr3 (27-102)||(36331325-36331400)
chr3 (66-131)||(35965809-35965874)
chr3 (28-124)||(35093592-35093688)
[»] chr4 (35 HSPs)
chr4 (12-132)||(6034043-6034163)
chr4 (12-132)||(11511443-11511563)
chr4 (12-131)||(480428-480547)
chr4 (12-131)||(24995088-24995207)
chr4 (12-131)||(48183030-48183149)
chr4 (12-131)||(29234226-29234345)
chr4 (12-131)||(41236347-41236466)
chr4 (12-131)||(50052409-50052528)
chr4 (12-131)||(42044348-42044467)
chr4 (12-132)||(54473514-54473634)
chr4 (12-131)||(29239886-29240005)
chr4 (12-131)||(23608235-23608354)
chr4 (27-133)||(3481652-3481758)
chr4 (12-132)||(31910191-31910311)
chr4 (12-132)||(50526152-50526272)
chr4 (12-133)||(40574777-40574898)
chr4 (12-126)||(53352547-53352660)
chr4 (12-93)||(41823920-41824001)
chr4 (27-131)||(19670712-19670816)
chr4 (12-131)||(48647707-48647826)
chr4 (27-131)||(29977885-29977989)
chr4 (27-131)||(47986208-47986312)
chr4 (27-131)||(50813888-50813992)
chr4 (63-131)||(55475191-55475259)
chr4 (12-123)||(28480249-28480360)
chr4 (12-123)||(28481124-28481235)
chr4 (12-123)||(28481999-28482110)
chr4 (12-131)||(47104544-47104663)
chr4 (27-113)||(17983739-17983825)
chr4 (27-131)||(8343159-8343263)
chr4 (27-131)||(32766958-32767062)
chr4 (63-131)||(29547991-29548059)
chr4 (27-123)||(29589736-29589831)
chr4 (12-91)||(56300146-56300225)
chr4 (63-135)||(18924527-18924599)
[»] chr8 (31 HSPs)
chr8 (12-135)||(34012277-34012400)
chr8 (12-131)||(12831047-12831166)
chr8 (20-133)||(15197331-15197444)
chr8 (12-131)||(14547922-14548041)
chr8 (12-133)||(504102-504223)
chr8 (12-132)||(40423924-40424044)
chr8 (20-134)||(23122586-23122700)
chr8 (12-131)||(1179921-1180040)
chr8 (12-131)||(44507068-44507187)
chr8 (12-130)||(5957831-5957949)
chr8 (12-131)||(37038479-37038598)
chr8 (12-133)||(43414562-43414683)
chr8 (27-131)||(10284627-10284731)
chr8 (12-131)||(4854844-4854963)
chr8 (12-126)||(10621068-10621182)
chr8 (12-112)||(8841413-8841513)
chr8 (12-131)||(15258910-15259029)
chr8 (26-132)||(15048177-15048282)
chr8 (12-87)||(9122229-9122304)
chr8 (12-135)||(20074923-20075038)
chr8 (27-131)||(16383377-16383481)
chr8 (63-131)||(30479506-30479574)
chr8 (27-131)||(34307216-34307320)
chr8 (27-131)||(17443825-17443929)
chr8 (27-131)||(24307789-24307893)
chr8 (48-131)||(14055609-14055692)
chr8 (27-131)||(42221515-42221619)
chr8 (12-89)||(38229470-38229547)
chr8 (27-131)||(16056397-16056501)
chr8 (63-131)||(24307629-24307697)
chr8 (12-61)||(25838259-25838308)
[»] chr7 (36 HSPs)
chr7 (12-131)||(8080364-8080483)
chr7 (12-133)||(35137531-35137652)
chr7 (12-131)||(4999495-4999614)
chr7 (12-132)||(38267039-38267159)
chr7 (20-131)||(7389389-7389500)
chr7 (12-133)||(19329840-19329961)
chr7 (12-131)||(38837217-38837336)
chr7 (22-131)||(36361904-36362013)
chr7 (12-128)||(3783998-3784114)
chr7 (12-131)||(40957707-40957826)
chr7 (21-131)||(3434562-3434672)
chr7 (22-131)||(36362026-36362135)
chr7 (12-130)||(32951474-32951592)
chr7 (22-131)||(19436178-19436287)
chr7 (12-133)||(3694365-3694486)
chr7 (27-133)||(8238210-8238317)
chr7 (12-131)||(35468836-35468955)
chr7 (12-131)||(36208173-36208292)
chr7 (28-133)||(21234399-21234504)
chr7 (27-131)||(38044197-38044301)
chr7 (12-131)||(46033782-46033901)
chr7 (27-131)||(22343361-22343465)
chr7 (27-131)||(40846109-40846213)
chr7 (27-131)||(41915741-41915845)
chr7 (12-126)||(35522881-35522995)
chr7 (27-132)||(32564422-32564527)
chr7 (12-131)||(11044188-11044297)
chr7 (12-132)||(41423681-41423801)
chr7 (12-131)||(26296644-26296763)
chr7 (37-131)||(46374808-46374902)
chr7 (31-131)||(7727906-7728006)
chr7 (12-131)||(18207180-18207298)
chr7 (12-133)||(31735882-31735996)
chr7 (66-131)||(10343598-10343663)
chr7 (12-132)||(39255905-39256024)
chr7 (12-97)||(27744290-27744375)
[»] chr6 (19 HSPs)
chr6 (12-135)||(32869674-32869797)
chr6 (12-128)||(22880639-22880755)
chr6 (12-133)||(17598552-17598673)
chr6 (12-131)||(11427616-11427737)
chr6 (12-131)||(6209446-6209565)
chr6 (12-131)||(29857827-29857946)
chr6 (20-132)||(31109389-31109501)
chr6 (12-131)||(31976248-31976367)
chr6 (27-133)||(31953026-31953132)
chr6 (14-131)||(15832577-15832694)
chr6 (27-132)||(15508020-15508125)
chr6 (27-131)||(15990038-15990142)
chr6 (20-100)||(23128116-23128196)
chr6 (27-131)||(30341356-30341460)
chr6 (12-131)||(31110742-31110859)
chr6 (12-130)||(946377-946495)
chr6 (26-127)||(28536483-28536582)
chr6 (27-126)||(9379708-9379807)
chr6 (27-132)||(4231547-4231652)
[»] chr5 (30 HSPs)
chr5 (12-135)||(33149619-33149742)
chr5 (12-131)||(36732923-36733042)
chr5 (12-134)||(40145404-40145526)
chr5 (12-128)||(18520865-18520981)
chr5 (12-131)||(2740274-2740393)
chr5 (12-133)||(14831812-14831933)
chr5 (15-133)||(28177773-28177891)
chr5 (12-132)||(35785198-35785318)
chr5 (12-131)||(13811652-13811771)
chr5 (12-133)||(42414283-42414404)
chr5 (12-131)||(6679698-6679817)
chr5 (12-131)||(15409591-15409710)
chr5 (20-131)||(35943881-35943992)
chr5 (12-130)||(36875593-36875702)
chr5 (209-262)||(8338818-8338871)
chr5 (12-132)||(26720515-26720635)
chr5 (12-132)||(26990264-26990384)
chr5 (27-131)||(3921261-3921365)
chr5 (27-131)||(2252164-2252268)
chr5 (12-131)||(20073497-20073616)
chr5 (12-131)||(31008988-31009107)
chr5 (21-87)||(21370048-21370114)
chr5 (42-131)||(41470427-41470516)
chr5 (12-131)||(33825305-33825424)
chr5 (21-83)||(31132392-31132454)
chr5 (12-100)||(39557498-39557586)
chr5 (27-131)||(39688893-39688997)
chr5 (12-132)||(6259982-6260102)
chr5 (27-131)||(9603813-9603917)
chr5 (66-130)||(16327902-16327966)
[»] chr2 (32 HSPs)
chr2 (12-131)||(17473020-17473139)
chr2 (12-131)||(30915463-30915582)
chr2 (12-131)||(9058480-9058599)
chr2 (12-133)||(13438341-13438462)
chr2 (12-133)||(19930801-19930922)
chr2 (12-128)||(28863458-28863574)
chr2 (12-131)||(7465716-7465835)
chr2 (22-131)||(5574479-5574588)
chr2 (12-132)||(40701477-40701597)
chr2 (20-131)||(10249371-10249482)
chr2 (12-131)||(32505629-32505748)
chr2 (12-131)||(33436081-33436200)
chr2 (12-135)||(28381636-28381759)
chr2 (20-133)||(40613891-40614004)
chr2 (12-131)||(20700815-20700934)
chr2 (27-133)||(27864702-27864808)
chr2 (20-131)||(38273131-38273242)
chr2 (14-131)||(42257193-42257310)
chr2 (12-132)||(4060684-4060804)
chr2 (12-131)||(26891485-26891604)
chr2 (12-130)||(41575138-41575257)
chr2 (22-131)||(38882802-38882913)
chr2 (12-132)||(17819985-17820105)
chr2 (12-131)||(33436211-33436330)
chr2 (20-131)||(36168836-36168947)
chr2 (12-125)||(3439985-3440098)
chr2 (12-131)||(2533124-2533242)
chr2 (27-133)||(43490119-43490225)
chr2 (27-131)||(38732354-38732458)
chr2 (27-113)||(2997483-2997569)
chr2 (27-115)||(13365369-13365457)
chr2 (27-131)||(45097731-45097835)
[»] scaffold0321 (1 HSPs)
scaffold0321 (12-131)||(10090-10209)
[»] scaffold0237 (1 HSPs)
scaffold0237 (12-131)||(4029-4148)
[»] scaffold1268 (1 HSPs)
scaffold1268 (12-133)||(910-1031)
[»] scaffold1267 (1 HSPs)
scaffold1267 (12-133)||(910-1031)
[»] scaffold0018 (1 HSPs)
scaffold0018 (27-115)||(152514-152602)
[»] scaffold0110 (1 HSPs)
scaffold0110 (27-132)||(8859-8964)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 9474857 - 9474977
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  9474857 agagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 9474956  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  9474957 gtgtctatgtatcattactca 9474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 2582034 - 2581915
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||| |||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  2582034 agagaagaggagagaaaaaagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 2581935  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  2581934 gtgtctatgtatcattactc 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 3000438 - 3000319
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  3000438 agagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 3000339  T
Q  112 gtgtctatgtatcattactc 131  Q
    |||| |||||||||||||||    
T  3000338 gtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 38595273 - 38595154
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | |||| |    
T  38595273 agagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaag 38595174  T
Q  112 gtgtctatgtatcattactc 131  Q
    |||| |||||||||||||||    
T  38595173 gtgtttatgtatcattactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 41758924 - 41758805
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||| ||||| |||||||||||||||||| || ||| |    
T  41758924 agagaagaggagagaaaagagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatg 41758825  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  41758824 gtgtctatgtatcattactc 41758805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 27564716 - 27564838
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||| ||| ||||| |||||| ||||||||||||| |||||||||| | ||||||    
T  27564716 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagg 27564815  T
Q  112 gtgtctatgtatcattactcata 134  Q
     ||||||||||||||||||||||    
T  27564816 atgtctatgtatcattactcata 27564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 47452301 - 47452422
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| ||| | |||||| |||||||||||||||||||||| | | ||||||    
T  47452301 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagg 47452400  T
Q  112 gtgtctatgtatcattactcat 133  Q
    ||||||||||||||||||||||    
T  47452401 gtgtctatgtatcattactcat 47452422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 48716263 - 48716383
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||| |||||||| |||||||| |||| |||||||||||||||||| ||||| |||||| ||||| ||||||| |||||||||| | ||||||    
T  48716263 agagaagaggaaagaaaagataaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagg 48716362  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  48716363 gtgtctatgtatcattactca 48716383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 38632302 - 38632421
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||| |||||||| |||| |||||||||||||||||| ||||| |||||| ||||| ||| ||| |||||||||| | ||||||    
T  38632302 agagaagaggagagaaaagaaaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagg 38632401  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  38632402 gtgtctatgtatcattactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 50630577 - 50630458
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||  |||||| |||||||| | ||||||    
T  50630577 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagg 50630478  T
Q  112 gtgtctatgtatcattactc 131  Q
    || |||||||||||||||||    
T  50630477 gtatctatgtatcattactc 50630458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 8346377 - 8346488
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| |||| | |||||||||||||||| ||||| |||||| ||||||||||||| |||||||||| | |||| |||| ||||    
T  8346377 ggagagaaaagagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactat 8346476  T
Q  120 gtatcattactc 131  Q
    ||||||||||||    
T  8346477 gtatcattactc 8346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 32813366 - 32813247
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||| ||||| || ||||| |||||| ||||||||| |||||||||||||| | ||||||    
T  32813366 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaagg 32813267  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||| ||||    
T  32813266 atgtctatgtatcataactc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 51898664 - 51898783
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||| |||||||||| |||| |||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||| | |||| |    
T  51898664 agagaagaggagaggaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaag 51898763  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  51898764 atgtctatgtatcattactc 51898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 44548357 - 44548473
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||||||| ||||| |||||||||| | |||| |    
T  44548357 agagaagaagagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaag 44548456  T
Q  112 gtgtctatgtatcatta 128  Q
     ||||||||||||||||    
T  44548457 atgtctatgtatcatta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 43243 - 43132
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||| ||||| |||||| ||||||||||||||| |||||||    |||||  |||||||    
T  43243 ggagagaaaagagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctat 43144  T
Q  120 gtatcattactc 131  Q
    ||||||||||||    
T  43143 gtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 37649317 - 37649196
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||| ||||||||| |||| |||  | |||||||| || ||||| |||||| |||||||||||||| ||||||||| | |||| |    
T  37649317 agagaagaggagagaaaagggaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaag 37649218  T
Q  112 gtgtctatgtatcattactcat 133  Q
     |||||||||||||||||||||    
T  37649217 atgtctatgtatcattactcat 37649196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 23597080 - 23597191
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    |||||||||||| ||||||||||||| |  |||| ||||| | || ||||| |||||||||||||| |||||| ||||||||| | |||| | |||||||    
T  23597080 ggagagaaaagataaagtgtgtttgtgcaaggtcaacgtggccacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctat 23597179  T
Q  120 gtatcattactc 131  Q
    ||||||||||||    
T  23597180 gtatcattactc 23597191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 45044541 - 45044640
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | |||||||||||||| ||||||||| ||||||||| ||| |||||||||| |||||| | ||||||||||| |||||||||| | ||||||    
T  45044541 agagaagagaagagaaaagagaaaatgtgtttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaagg 45044640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 50590996 - 50591101
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  50590996 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 50591095  T
Q  127 tactca 132  Q
     |||||    
T  50591096 aactca 50591101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 11152359 - 11152476
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||| |||||| ||| |||| ||||||| || ||||||| ||||| |||||| ||||| |||| ||||||||||||| | |||| |    
T  11152359 agagaagaggagaggaaaaagaaagcgtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaa-g 11152457  T
Q  112 gtgtctatgtatcattact 130  Q
    |||||||||| ||||||||    
T  11152458 gtgtctatgtttcattact 11152476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 13414868 - 13414791
Alignment:
Q  24 agaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattg 101  Q
    |||||||||||| |||| ||||  ||||||||||||||||| ||| | |||||| |||||||||||||||||||||||    
T  13414868 agaaaagagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattg 13414791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 41608489 - 41608594
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  ||||||||||||||  || | |||||||| |||||| |||| ||||||| ||||||||||| | |||||| ||| ||||||||||    
T  41608489 aaagagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcat 41608588  T
Q  127 tactca 132  Q
     |||||    
T  41608589 aactca 41608594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 5958996 - 5959100
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  |||| |||||||| |||||| ||||||||||||  |||||||||| |  ||||||||| ||||||||||    
T  5958996 aaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcat 5959095  T
Q  127 tactc 131  Q
     ||||    
T  5959096 aactc 5959100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 26440844 - 26440732
Alignment:
Q  21 gagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatg 120  Q
    |||||||||||||||||||| || | |||| |||| ||| | || ||||| |||||| ||||||||| |||||||||||||  |||||||| |||||||     
T  26440844 gagagaaaagagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatc 26440745  T
Q  121 tatcattactcat 133  Q
    |||| | ||||||    
T  26440744 tatcctaactcat 26440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 26274542 - 26274435
Alignment:
Q  21 gagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatg 120  Q
    ||||||||||| |||||||  |||| | || ||||||||||||  ||||| |||||| ||||| ||||||| | |||||||| |  ||||||||||||||    
T  26274542 gagagaaaagaaaaagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatg 26274443  T
Q  121 tatcatta 128  Q
    ||||||||    
T  26274442 tatcatta 26274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 37926419 - 37926538
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | ||||||||||||||||||  ||||||||| |||| ||| | || ||||| |||||||||||||||| ||| | |||||||| | |||| |    
T  37926419 agagaagagaagagaaaagagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaag 37926518  T
Q  112 gtgtctatgtatcattactc 131  Q
     | |||||||||||| ||||    
T  37926519 atatctatgtatcataactc 37926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 49811508 - 49811627
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| ||| ||| |  || |||| ||||| |||||| ||||| ||||||| |||||||||  | ||||||    
T  49811508 agagaagaggagagaaaagagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaagg 49811607  T
Q  112 gtgtctatgtatcattactc 131  Q
     ||||||| |||||| ||||    
T  49811608 atgtctatctatcataactc 49811627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 6260989 - 6260868
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  ||| ||||| |||| || | ||||||||||||||| |||||| | ||||||||||||||||  | ||||||||| | | ||||||    
T  6260989 agagaagaggagaagaaatagaaaatgtgcttatgcggggtccacgtgaccacatgttagatttttatgtgggtgttcaggggtgtattaccacctaagg 6260890  T
Q  112 gtgtctatgtatcattactcat 133  Q
     | ||||| |||||| ||||||    
T  6260889 atatctatctatcataactcat 6260868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 44454098 - 44453984
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  ||||| ||||| |||||||| ||||  ||| ||||||| || |||||||| |||||| ||||||| ||||  | |||||||| |  ||| |    
T  44454098 agagaagatgagaggaaagaaaaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaag 44453999  T
Q  112 gtgtctatgtatcat 126  Q
    |||||||||||||||    
T  44453998 gtgtctatgtatcat 44453984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 47748546 - 47748441
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    ||||||||||| |  |||| |||| ||||  || | |||||||| |||||||| |||||||| ||||||||||||| | |||||||| | ||||||||||    
T  47748546 aaagagaaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtc-aagggtgtattgccacctaagggtatttatgtatcat 47748448  T
Q  127 tactcat 133  Q
     ||||||    
T  47748447 aactcat 47748441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 3302533 - 3302637
Alignment:
Q  31 agaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattact 130  Q
    |||||||||| ||||| ||||||||  ||| ||| ||||| |||||| |||||||||| | |  | |||||  | |||||| ||| ||||||||||||||    
T  3302533 agaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatcattact 3302632  T
Q  131 cataa 135  Q
    |||||    
T  3302633 cataa 3302637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 53982130 - 53982008
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  53982130 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 53982031  T
Q  112 gtgtctatgtatcattactcata 134  Q
    |||||||||||||||||||||||    
T  53982030 gtgtctatgtatcattactcata 53982008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 33644319 - 33644199
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | | ||||    
T  33644319 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagg 33644220  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  33644219 gtgtctatgtatcattactca 33644199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 52629419 - 52629305
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  52629419 agagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 52629320  T
Q  112 gtgtctatgtatcat 126  Q
    |||||||||||||||    
T  52629319 gtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 49607525 - 49607414
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| ||||  ||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||||||||||    
T  49607525 ggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctat 49607426  T
Q  120 gtatcattactc 131  Q
    ||||||||||||    
T  49607425 gtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 54868876 - 54868995
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| |||| |||||||||||| ||||| ||||| |||||| ||||||||||||| |||||||||| | ||||||    
T  54868876 agagaagatgagagaaaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagg 54868975  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  54868976 gtgtctatgtatcattactc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 8076512 - 8076393
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| |||||||||||||| |||| |||||||||||||||||| ||| | |||||| |||||||||||||||||||| ||| | ||||||    
T  8076512 agagaagaggagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagg 8076413  T
Q  112 gtgtctatgtatcattactc 131  Q
    |||| |||||||||||||||    
T  8076412 gtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 24699935 - 24700054
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||| | || || || |||||||||||||||||||| |||||||||| | ||||||    
T  24699935 agagaagaggagaggaaagagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaagg 24700034  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  24700035 atgtctatgtatcattactc 24700054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 11095346 - 11095453
Alignment:
Q  22 agagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgt 121  Q
    |||||||||||||||||||||| | ||||||  |||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  11095346 agagaaaagagaaagtgtgtttatgcggggt--acgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgt 11095443  T
Q  122 atcattactc 131  Q
    ||||||||||    
T  11095444 atcattactc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 31456800 - 31456690
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||   ||| ||||||||||    
T  31456800 ggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctat 31456701  T
Q  120 gtatcattact 130  Q
    |||||||||||    
T  31456700 gtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 17470524 - 17470405
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| ||||  ||||||||||||||||| ||||| |||||| ||||||||| ||| |||||||||| | |||| |    
T  17470524 agagaagatgagagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaag 17470425  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  17470424 gtgtctatgtatcattactc 17470405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 33118840 - 33118951
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    |||||| ||||||||||||||||| |  ||| ||||||||||||| |||||||||||| |||||||||||||||||||||||  | ||||||||||||||    
T  33118840 ggagaggaaagagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctat 33118939  T
Q  120 gtatcattactc 131  Q
    ||||||| ||||    
T  33118940 gtatcataactc 33118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 48587081 - 48587187
Alignment:
Q  21 gagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatg 120  Q
    |||||||||||||||||||  |||| |||| ||||||||||||| ||||| |||||||||| |||||||||||||||||||| | |||||||| ||||||    
T  48587081 gagagaaaagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatg 48587180  T
Q  121 tatcatt 127  Q
    |||||||    
T  48587181 tatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 26141515 - 26141636
Alignment:
Q  14 agaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggt 113  Q
    ||||| ||||||||||||||||||||| ||||  |||||||| ||||| || ||||| |||||| ||||||||| |||||||||||||| | |||||| |    
T  26141515 agaagaggagagaaaagagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggat 26141614  T
Q  114 gtctatgtatcattactcataa 135  Q
    ||||||||||||| ||||||||    
T  26141615 gtctatgtatcataactcataa 26141636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 27714882 - 27714991
Alignment:
Q  22 agagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgt 121  Q
    ||||| ||||||||||||| |||| |||||||||| ||||||| ||||| |||||| |||||||||||||||||||||| | | |||| |||||||||||    
T  27714882 agagagaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgt 27714981  T
Q  122 atcattactc 131  Q
    ||||||||||    
T  27714982 atcattactc 27714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 9563118 - 9562999
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||| ||||||||||||||||| | || ||||||||||||| ||||| |||||||| ||| ||||||||| |||||||  |||||| |    
T  9563118 agagaagaggagagaagagagaaagtgtgtttgtgcaggatccacgtgactacgtgtcagatttttatatggatgtcaaaggttgtattgtcatctaatg 9563019  T
Q  112 gtgtctatgtatcattactc 131  Q
    |||| |||||||||||||||    
T  9563018 gtgtttatgtatcattactc 9562999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 41189747 - 41189864
Alignment:
Q  14 agaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggt 113  Q
    ||||| ||||||||||||||||||||| |||| ||||||||| ||| | || |||||||||||||||||||||||||| | |||||||| | |||||| |    
T  41189747 agaagaggagagaaaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggat 41189846  T
Q  114 gtctatgtatcattactc 131  Q
    || |||||||||| ||||    
T  41189847 gtatatgtatcataactc 41189864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 26754814 - 26754700
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||||||||| |||| |||| ||||||||| ||||| |||||||| |||||| ||||| |||| ||||||||||||| | ||||||    
T  26754814 agagaagaggagaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagg 26754715  T
Q  112 gtgtctatgtatcat 126  Q
    ||||||||| |||||    
T  26754714 gtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 14623835 - 14623939
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||| ||||  | ||||||| |||  |||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||    
T  14623835 aaagagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcat 14623934  T
Q  127 tactc 131  Q
    |||||    
T  14623935 tactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 20764896 - 20765016
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| |||||||||||||| ||| | || ||||| |||||| ||||||||| |||| ||||||| | | ||||||    
T  20764896 agagaagatgagagaaaagagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagg 20764995  T
Q  112 gtgtctatgtatcattactca 132  Q
     ||||||||| |||| |||||    
T  20764996 atgtctatgtctcataactca 20765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 30801714 - 30801834
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  ||||| ||||||||| |||| ||||  ||||||||  ||||||||||||| |||||| ||||||| ||||||||||||||   | ||||||    
T  30801714 agagaagatgagaggaaagagaaaatgtgcttgtgtggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagg 30801813  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||| ||||    
T  30801814 gtgtctatgtatcattgctca 30801834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 51419349 - 51419460
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| |||| ||||||| | ||| | || ||||| |||||| ||||||||| ||||| |||||||  |||||||| |||||||    
T  51419349 ggagagaaaagagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctat 51419448  T
Q  120 gtatcattactc 131  Q
    ||||||| ||||    
T  51419449 gtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 36707409 - 36707524
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||||||||      |||| ||||||| ||||| ||||| |||||| ||||| |||||||||||||||||  | ||||||    
T  36707409 agagaagaggagagaaaagagaaagtgtgcg----cgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagg 36707504  T
Q  112 gtgtctatgtatcattactc 131  Q
    || |||||||||||||||||    
T  36707505 gtatctatgtatcattactc 36707524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 11347903 - 11348022
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| || | | ||||||| ||| | || ||||| |||||| ||||| ||||||||| |||||||  | ||||||    
T  11347903 agagaagaggagagaaaagagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaagg 11348002  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||| ||||    
T  11348003 atgtctatgtatcataactc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 11907488 - 11907371
Alignment:
Q  14 agaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggt 113  Q
    ||||| |||||||||||||||| |||| |||| |||||||||  |||| |||||||| |||||| |||| ||||  | | ||||||||  | ||||||||    
T  11907488 agaagaggagagaaaagagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggt 11907389  T
Q  114 gtctatgtatcattactc 131  Q
    ||||||||||||| ||||    
T  11907388 gtctatgtatcataactc 11907371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 35536707 - 35536626
Alignment:
Q  50 ggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    ||||||| |||| || ||||| |||||||||||||||||||| |||||||||| |  ||||| |||||||||||||||||||    
T  35536707 ggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactc 35536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 13898051 - 13898154
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||| ||||  | ||||||| |||  || ||||| ||||||||||||||||||| ||||||||||| | |||||| ||| ||| ||||||    
T  13898051 aaagagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcat 13898150  T
Q  127 tact 130  Q
    ||||    
T  13898151 tact 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 41080826 - 41080709
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  ||||||||| |||| ||||  ||| ||||| |||| |||| ||| ||||||  |||||||||||||||||| |||||| ||||||    
T  41080826 agagaagaggagatgaaagagaaaatgtgcttgtgtggg-tccacatgaccacatatcagatttttgcgtgggtgtcaaagggtgttttgcta-ctaagg 41080729  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  41080728 atgtctatgtatcattactc 41080709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 47531976 - 47531865
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| |||| |||||| ||  || | || ||||| ||| || ||||| ||| ||| |||||||||| |||||||| |||||||    
T  47531976 ggagagaaaagagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctat 47531877  T
Q  120 gtatcattactc 131  Q
    ||||||| ||||    
T  47531876 gtatcataactc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 8956827 - 8956762
Alignment:
Q  66 tgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    ||||| |||||||||||||||||||||| |||||||| |  ||||| |||||||||||||||||||    
T  8956827 tgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactc 8956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 45058585 - 45058653
Alignment:
Q  63 acatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactca 132  Q
    |||||||| ||||||||||||||||||| ||||||||||| | |||||||||| |||||||||| |||||    
T  45058585 acatgtcagatttttatgtgggtgtcaa-gggtgtattgccacctaagggtgtttatgtatcataactca 45058653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 39670130 - 39670019
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||| |||||||  |||||| ||||||| |||  || |||||||||||||| | | |||||| || | |||||| |  |||||    
T  39670130 agagaagaggagagaaaagaggaagtgtgcgtgtacgaggtccacatgatcacgtgtcaaatttttatatagatgtcaagggatatattgccacataagg 39670031  T
Q  112 gtgtctatgtat 123  Q
     |||||||||||    
T  39670030 atgtctatgtat 39670019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 42823215 - 42823116
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    ||||||||||| |  || | |||||||||  |||| ||||||||||||||| |||||||||||| ||||||||| | |  ||| ||||| ||||||||||    
T  42823215 aaagagaaagtatacttatgcggggtccatatgaccacatgtcaaatttttttgtgggtgtcaaggggtgtattaccacataatggtgtttatgtatcat 42823116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 48375687 - 48375806
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||||||||| |||| |||| ||||||||| ||||| ||| |||| |||||| | ||| | |  | ||||||||||  | ||||||    
T  48375687 agagaagaggagaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacacgtcagatttttgtatggattttcaggggtgtattgtcacctaagg 48375786  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||| ||||| ||||    
T  48375787 gtgtctatgaatcataactc 48375806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 1758437 - 1758558
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaa--agggtgtattgctatctaa 109  Q
    ||||||| |||||  ||||||||| |||||||||  || |||||||| || | |||||| |||||| ||||||||||||   ||||||||||| | |||     
T  1758437 agagaagaggagatgaaagagaaaatgtgtttgtgtggagtccacgtaaccatatgtcagatttttgtgtgggtgtcaaggggggtgtattgcaacctat 1758536  T
Q  110 gggtgtctatgtatcattactc 131  Q
    || || ||||||||||| ||||    
T  1758537 ggttgactatgtatcataactc 1758558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 36331410 - 36331478
Alignment:
Q  63 acatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    ||||| || |||||| ||||| |||||| ||||| ||||| |||||||||||| |||||||||| ||||    
T  36331410 acatgccagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcataactc 36331478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 36331325 - 36331400
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgc 102  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||| |||||    
T  36331325 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgc 36331400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 35965809 - 35965874
Alignment:
Q  66 tgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    ||||| |||||||||||||||||||||| ||||||   |  ||||| ||| |||||||||||||||    
T  35965809 tgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactc 35965874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 35093688 - 35093592
Alignment:
Q  28 aagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatc 124  Q
    ||||||||||||| ||||| || || ||| |||| |||||||| ||||||  |||| ||||||| | |||||||  | |||| | ||||||||||||    
T  35093688 aagagaaagtgtgcttgtatggagttcacatgaccacatgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatc 35093592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 6034163 - 6034043
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||    
T  6034163 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 6034064  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  6034063 gtgtctatgtatcattactca 6034043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 11511443 - 11511563
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | ||||||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||    
T  11511443 agagaagagaagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagg 11511542  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  11511543 gtgtctatgtatcattactca 11511563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 480428 - 480547
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||  | ||||||    
T  480428 agagaagaggagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagg 480527  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  480528 gtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 24995088 - 24995207
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  24995088 agagaagaggagagaaaagagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagg 24995187  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||| || |||||||||||    
T  24995188 gtgtccatatatcattactc 24995207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 48183030 - 48183149
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| |  |||||    
T  48183030 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagg 48183129  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  48183130 gtgtctatgtatcattactc 48183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 29234226 - 29234345
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||  ||| |||||||||||||||| ||||||||    
T  29234226 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagg 29234325  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  29234326 gtgtctatgtatcattactc 29234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 41236466 - 41236347
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||||| ||||||| |||||||||| | ||||||    
T  41236466 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagg 41236367  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  41236366 gtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 50052409 - 50052528
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| |||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  50052409 agagaagaggagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 50052508  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  50052509 atgtctatgtatcattactc 50052528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 42044348 - 42044467
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||  |||| |||||||| | ||||||    
T  42044348 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagg 42044447  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  42044448 gtgtctatgtatcattactc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 54473514 - 54473634
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||| |||||||| |||| |||||||||||||||||| ||| | |||||| ||||||||||||| |||||||||  | ||||||    
T  54473514 agagaagaggagagaaaagataaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagg 54473613  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  54473614 gtgtctatgtatcattactca 54473634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 29240005 - 29239886
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| |||||||||||||| ||||  ||||||||||||||||| ||| | |||||| ||||| ||||||| |||||||||| | ||||||    
T  29240005 agagaagaggagaggaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagg 29239906  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  29239905 gtgtctatgtatcattactc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 23608354 - 23608235
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||| ||||||||||||||| ||||  || || ||||||||||| ||||| |||||| ||||||||||||| |||||||||  ||||||||    
T  23608354 agagaagaggagataaaagagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagg 23608255  T
Q  112 gtgtctatgtatcattactc 131  Q
    |||||||| |||||||||||    
T  23608254 gtgtctatatatcattactc 23608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 3481758 - 3481652
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||| ||||  ||||||||||||||||  ||||| |||||| |||||||||||||| ||||||||| | |||| ||||||||||||||||    
T  3481758 aaagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcat 3481659  T
Q  127 tactcat 133  Q
    |||||||    
T  3481658 tactcat 3481652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 31910311 - 31910191
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| |||| ||||||||| ||| |||  ||||| |||||| |||||||||||||| ||||||||  | ||||||    
T  31910311 agagaagatgagagaaaagagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaagg 31910212  T
Q  112 gtgtctatgtatcattactca 132  Q
     |||||||||||||| |||||    
T  31910211 atgtctatgtatcataactca 31910191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 50526152 - 50526272
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||| |||||| ||| |||| |||  |||||||||| || ||||| |||||| |||||||||||||||||||||||| | |||| |    
T  50526152 agagaagaggagaggaaatagaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaag 50526251  T
Q  112 gtgtctatgtatcattactca 132  Q
     ||||||||||||||||||||    
T  50526252 atgtctatgtatcattactca 50526272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 40574898 - 40574777
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| |||| ||  |  | ||||| |||||| |||||||||||||||||||||| | | ||||||    
T  40574898 agagaagaggagagaaaagagaaagtgtgcttgttcgggatccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagg 40574799  T
Q  112 gtgtctatgtatcattactcat 133  Q
     |||||||||||||| ||||||    
T  40574798 atgtctatgtatcataactcat 40574777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 53352547 - 53352660
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||||| || |||| |||||||||| | ||||| ||||| |||||| ||| ||||| ||||  |||||||| | ||||||    
T  53352547 agagaagaggagagaaaagagaaagtatgcttgtgcggggtccacttaactacgtgtcagatttttgtgtaggtgttaaagaatgtattgc-acctaagg 53352645  T
Q  112 gtgtctatgtatcat 126  Q
    |||||||||||||||    
T  53352646 gtgtctatgtatcat 53352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 41824001 - 41823920
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagg 93  Q
    |||||||  |||||||||||||||||||| |||| ||||||||| |||||||| ||||| |||||| ||||||||| |||||    
T  41824001 agagaagaagagagaaaagagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgttaaagg 41823920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 19670712 - 19670816
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||| ||||||| ||||||||||| | |||||||||| ||||||||||    
T  19670712 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 19670811  T
Q  127 tactc 131  Q
     ||||    
T  19670812 aactc 19670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 48647707 - 48647826
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||||||||| |||| |||| ||| ||||||||||| || ||| | |||||||||||||||| ||  ||||||||| || ||||||    
T  48647707 agagaagaggagaggaaagagaaattgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggtgttaagaggtgtattgttacctaagg 48647806  T
Q  112 gtgtctatgtatcattactc 131  Q
     ||| ||||| |||| ||||    
T  48647807 atgtttatgtgtcataactc 48647826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 29977989 - 29977885
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||| ||||  ||||||||  ||||||| ||||| |||||| ||||||||| || ||||||||||| | ||| || | | ||||||||||    
T  29977989 aaagagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcat 29977890  T
Q  127 tactc 131  Q
    |||||    
T  29977889 tactc 29977885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 47986312 - 47986208
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| ||||| |||||| || |||||||| | |||||||||| ||||||||||    
T  47986312 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcat 47986213  T
Q  127 tactc 131  Q
     ||||    
T  47986212 aactc 47986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 50813888 - 50813992
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||| ||  |||| |||||||| |||||| |||||||||||| ||||||||| | | ||||| |||| ||||||||||    
T  50813888 aaagagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcat 50813987  T
Q  127 tactc 131  Q
     ||||    
T  50813988 aactc 50813992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 55475259 - 55475191
Alignment:
Q  63 acatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    |||||||| |||||| |||||||||||||||||||||||| | |||||| ||| |||||||||| ||||    
T  55475259 acatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactc 55475191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 28480249 - 28480360
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  || ||||||||||||||||  ||||||||| ||||||||||||| |||||| |||| |||| ||   ||||||||  | ||||||    
T  28480249 agagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaagg 28480348  T
Q  112 gtgtctatgtat 123  Q
     |||||||||||    
T  28480349 ttgtctatgtat 28480360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 28481124 - 28481235
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  || ||||||||||||||||  ||||||||| ||||||||||||| |||||| |||| |||| ||   ||||||||  | ||||||    
T  28481124 agagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaagg 28481223  T
Q  112 gtgtctatgtat 123  Q
     |||||||||||    
T  28481224 ttgtctatgtat 28481235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 28481999 - 28482110
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  || ||||||||||||||||  ||||||||| ||||||||||||| |||||| |||| |||| ||   ||||||||  | ||||||    
T  28481999 agagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaagg 28482098  T
Q  112 gtgtctatgtat 123  Q
     |||||||||||    
T  28482099 ttgtctatgtat 28482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 47104663 - 47104544
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  |||||||||||||||||||  |||||| |    || || |||||||||||| ||||||||||| || ||||||||  |||||||     
T  47104663 agagaagaggagatgaaagagaaagtgtgtttgtgtggggtcaataaaaccacgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaaga 47104564  T
Q  112 gtgtctatgtatcattactc 131  Q
     ||||||| |||||||||||    
T  47104563 atgtctatatatcattactc 47104544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 17983739 - 17983825
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggt 113  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||| | ||||||||    
T  17983739 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 17983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 8343159 - 8343263
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    ||||||||||| |  || | |||||||||  || | |||||||| |||||||||| ||||||||||| |||||||| | |||||| ||| ||||||||||    
T  8343159 aaagagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcat 8343258  T
Q  127 tactc 131  Q
     ||||    
T  8343259 aactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 32767062 - 32766958
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| | |||||||  || | |||||||| |||||| | |||||||||| ||||||||||| | ||||| |||| ||||||||||    
T  32767062 aaagagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcat 32766963  T
Q  127 tactc 131  Q
     ||||    
T  32766962 aactc 32766958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 29547991 - 29548059
Alignment:
Q  63 acatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    |||||||| |||||| |||||||||||| || |||||||| | |||||| ||| |||||||||| ||||    
T  29547991 acatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 29548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 29589736 - 29589831
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtat 123  Q
    |||||||||||||  ||||  ||||||||  || | |||| ||| |||||| |||||||||||| ||||||||||| | |||||||||| |||||||    
T  29589736 aaagagaaagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgtattgc-aactaagggtgtttatgtat 29589831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 56300146 - 56300225
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaa 91  Q
    ||||||| |||||| ||||||||||||||||||| | || | ||  |||| |||||||| |||||| ||||| |||||||    
T  56300146 agagaagaggagaggaaagagaaagtgtgtttgtgcaggattcatatgaccacatgtcagatttttgtgtggatgtcaaa 56300225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 18924527 - 18924599
Alignment:
Q  63 acatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactcataa 135  Q
    |||||||| |||||| ||||| | |||| ||||||||||| | |||||||| | |||| ||||| ||||||||    
T  18924527 acatgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataactcataa 18924599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 34012277 - 34012400
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||||| | | ||||||    
T  34012277 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagg 34012376  T
Q  112 gtgtctatgtatcattactcataa 135  Q
    ||||||||||||||||||||||||    
T  34012377 gtgtctatgtatcattactcataa 34012400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 12831166 - 12831047
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||  | ||||||    
T  12831166 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagg 12831067  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  12831066 gtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 15197444 - 15197331
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||| ||||||||    
T  15197444 ggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctat 15197345  T
Q  120 gtatcattactcat 133  Q
    ||||||||||||||    
T  15197344 gtatcattactcat 15197331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 14548041 - 14547922
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||| | ||||||    
T  14548041 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagg 14547942  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||| ||||||    
T  14547941 gtgtctatgtatctttactc 14547922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 504102 - 504223
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||| ||||| |||| |||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||| | ||||||    
T  504102 agagaagatgagagaaaagagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagg 504201  T
Q  112 gtgtctatgtatcattactcat 133  Q
    ||||||||||||||||||||||    
T  504202 gtgtctatgtatcattactcat 504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 40423924 - 40424044
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||| ||||||| ||||| |||||| ||||| |||||||||||||||||| | ||||||    
T  40423924 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagg 40424023  T
Q  112 gtgtctatgtatcattactca 132  Q
    || ||||||||||||||||||    
T  40424024 gtatctatgtatcattactca 40424044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 23122586 - 23122700
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||| |  |||||||||||||    
T  23122586 ggagagaaaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctat 23122685  T
Q  120 gtatcattactcata 134  Q
    |||||||||||||||    
T  23122686 gtatcattactcata 23122700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 1179921 - 1180040
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||  ||||| ||||||| ||||| |||||| |||||||||||||||||||||| | | ||||||    
T  1179921 agagaagaggagagaaaagagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagg 1180020  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  1180021 gtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 44507068 - 44507187
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  ||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||| ||||||||| |||| ||||||| | | ||||||    
T  44507068 agagaagatgagagaaaagagaaagtatgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagg 44507167  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  44507168 gtgtctatgtatcattactc 44507187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 5957949 - 5957831
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| |||||||||||||| |||| |||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||| | |||||     
T  5957949 agagaagaggagaggaaagagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaga 5957850  T
Q  112 gtgtctatgtatcattact 130  Q
     ||||||||||||||||||    
T  5957849 atgtctatgtatcattact 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 37038598 - 37038479
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||| |||||||||| |||| |||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||| | |||| |    
T  37038598 agagaagaggagaggaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaag 37038499  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  37038498 atgtctatgtatcattactc 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 43414562 - 43414683
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| |||| ||||| || ||| | |||||| ||||||||||||||||||| |||| ||||||||    
T  43414562 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaagg 43414661  T
Q  112 gtgtctatgtatcattactcat 133  Q
     |||||||||||||| ||||||    
T  43414662 atgtctatgtatcataactcat 43414683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 10284627 - 10284731
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||| |||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||||  |  ||||||||||||||||||||    
T  10284627 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcat 10284726  T
Q  127 tactc 131  Q
     ||||    
T  10284727 aactc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 4854844 - 4854963
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| | ||||||| ||| | |||| ||| |||||||||| ||||| |||||||||||||| | ||||||    
T  4854844 agagaagaggagagaaaagagaaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaagg 4854943  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  4854944 atgtctatgtatcattactc 4854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 10621068 - 10621182
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| || | ||| |||| ||||| |||||| |||||||||||||||||||||| | | ||||||    
T  10621068 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagg 10621167  T
Q  112 gtgtctatgtatcat 126  Q
     ||||||||||||||    
T  10621168 atgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 8841413 - 8841513
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| |||||||||||||| |||| |||||||||||||||||| ||| | |||||| |||||||||||||||||||| ||| | ||||||    
T  8841413 agagaagaggagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagg 8841512  T
Q  112 g 112  Q
    |    
T  8841513 g 8841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 15258910 - 15259029
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||||||||| |||| |||| | ||||||||||||| |||||||| |||||||||||| |||| | || |||||||| |||||||     
T  15258910 agagaagaggagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaaga 15259009  T
Q  112 gtgtctatgtatcattactc 131  Q
    || |||||||||||| ||||    
T  15259010 gtatctatgtatcataactc 15259029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 15048177 - 15048282
Alignment:
Q  26 aaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatca 125  Q
    ||||||||||||||| |||| ||||||||| ||| |||| ||||| |||||| ||||| |||||||||||||||||| | |||||| |||||||||||||    
T  15048177 aaaagagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatca 15048275  T
Q  126 ttactca 132  Q
    | |||||    
T  15048276 taactca 15048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 9122304 - 9122229
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgt 87  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||| |||||||||    
T  9122304 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgt 9122229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 20074923 - 20075038
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | |||| |||||||||||||| |||| | |||||||||||        ||| ||||||||||||||||||||| ||||||||| | ||||||    
T  20074923 agagaagagaagaggaaagagaaagtgtgcttgtgcagggtccacgtg--------tcacatttttatgtgggtgtcaaagagtgtattgccacctaagg 20075014  T
Q  112 gtgtctatgtatcattactcataa 135  Q
     |||||||||||||||||||||||    
T  20075015 atgtctatgtatcattactcataa 20075038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 16383481 - 16383377
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  16383481 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 16383382  T
Q  127 tactc 131  Q
     ||||    
T  16383381 aactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 30479506 - 30479574
Alignment:
Q  63 acatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    |||||||| |||||||||||| |||||||||||||||||| | |||||||||| |||||||||| ||||    
T  30479506 acatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 34307320 - 34307216
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||| ||  || | |||||||| |||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  34307320 aaagagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 34307221  T
Q  127 tactc 131  Q
     ||||    
T  34307220 aactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 17443929 - 17443825
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    ||||||||||||| |||||  ||||||||| ||||||||||||| |||||| |||| |||| ||   ||||||||  | |||||| ||||||||||||||    
T  17443929 aaagagaaagtgtctttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcat 17443830  T
Q  127 tactc 131  Q
     ||||    
T  17443829 aactc 17443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 24307789 - 24307893
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||| ||| |||||| |||||||||||| || |||||||| | |||||||||| ||||||||||    
T  24307789 aaagagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcat 24307888  T
Q  127 tactc 131  Q
     ||||    
T  24307889 aactc 24307893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 14055609 - 14055692
Alignment:
Q  48 ggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||| | |||||| ||||| |||||| | ||||||||  | ||||||||||| ||||||||| ||||    
T  14055609 ggggtccacgtgactacatgtaagatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 42221619 - 42221515
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||| ||||| ||||||||  ||| ||| ||||| |||||| |||||||||| | |  |||||||  | |||||| ||| ||||||||||    
T  42221619 aaagagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcat 42221520  T
Q  127 tactc 131  Q
    |||||    
T  42221519 tactc 42221515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 38229547 - 38229470
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtca 89  Q
    ||||||| | |||| ||||||||| |||| |||||| |  |||||||||| |||||||| |||||| |||||||||||    
T  38229547 agagaagagaagaggaaagagaaaatgtgcttgtacagaatccacgtgaccacatgtcagatttttgtgtgggtgtca 38229470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 16056397 - 16056501
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| || |||||||  |  ||||| ||| ||||||||||    
T  16056397 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcat 16056496  T
Q  127 tactc 131  Q
     ||||    
T  16056497 aactc 16056501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 24307697 - 24307629
Alignment:
Q  63 acatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    |||| ||| |||||| |||||||||||| || |||||||| | |||||||||| |||||||||| ||||    
T  24307697 acatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 25838308 - 25838259
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgac 61  Q
    ||||||| |||||||||||| |||||||| |||||||| ||||| |||||    
T  25838308 agagaagaggagagaaaagaaaaagtgtgcttgtacggagtccatgtgac 25838259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 8080364 - 8080483
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| | ||||||    
T  8080364 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagg 8080463  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  8080464 gtgtctatgtatcattactc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 35137652 - 35137531
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||| |||||||||||||||||||||||| | ||||||    
T  35137652 agagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 35137553  T
Q  112 gtgtctatgtatcattactcat 133  Q
    |||||||| |||||||||||||    
T  35137552 gtgtctatttatcattactcat 35137531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 4999495 - 4999614
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||||||| | ||| |||||| ||||||||||||| |||||||||| ||||||||    
T  4999495 agagaagaggagataaaagagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagg 4999594  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  4999595 gtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 38267159 - 38267039
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||  |  |||||    
T  38267159 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagg 38267060  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  38267059 gtgtctatgtatcattactca 38267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 7389500 - 7389389
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||| ||||||||| | ||||||||||||||    
T  7389500 ggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctat 7389401  T
Q  120 gtatcattactc 131  Q
    ||||||||||||    
T  7389400 gtatcattactc 7389389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 19329961 - 19329840
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||| ||| ||||| |||||| ||||||||||||| |||||||||| | ||||||    
T  19329961 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagg 19329862  T
Q  112 gtgtctatgtatcattactcat 133  Q
     |||||||||||||||||||||    
T  19329861 atgtctatgtatcattactcat 19329840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 38837336 - 38837217
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||| |||||  ||||||||||||| | ||||||    
T  38837336 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagg 38837237  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  38837236 gtgtctatgtatcattactc 38837217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 36361904 - 36362013
Alignment:
Q  22 agagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgt 121  Q
    ||||||||||||||||||| ||||  ||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||| | ||||||||||||||||    
T  36361904 agagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgt 36362003  T
Q  122 atcattactc 131  Q
    ||||||||||    
T  36362004 atcattactc 36362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 3784114 - 3783998
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| ||||| |||||| ||||||||||||| | |||||||| | ||||||    
T  3784114 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagg 3784015  T
Q  112 gtgtctatgtatcatta 128  Q
    |||||||||||||||||    
T  3784014 gtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 40957826 - 40957707
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||| ||||||| |||||| ||||||||| | |||||     
T  40957826 agagaagatgagagaaaagagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaaga 40957727  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  40957726 gtgtctatgtatcattactc 40957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 3434672 - 3434562
Alignment:
Q  21 gagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatg 120  Q
    |||||||||||||||||||| |||| |||| ||||||||||||| |||||  ||||| |||||||||||||||||||||||| | |||||| ||||||||    
T  3434672 gagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatg 3434573  T
Q  121 tatcattactc 131  Q
    |||||||||||    
T  3434572 tatcattactc 3434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 36362135 - 36362026
Alignment:
Q  22 agagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgt 121  Q
    ||||||||||||||||||| ||||  ||||||||||||||||| ||||| |||||| ||||||||||||||| |||||| | | ||||||||||||||||    
T  36362135 agagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgt 36362036  T
Q  122 atcattactc 131  Q
    ||||||||||    
T  36362035 atcattactc 36362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 32951474 - 32951592
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||| | |||||| ||||| ||| ||||| |||||||  |||||||     
T  32951474 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaaga 32951573  T
Q  112 gtgtctatgtatcattact 130  Q
    |||||||||||||||||||    
T  32951574 gtgtctatgtatcattact 32951592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 19436178 - 19436287
Alignment:
Q  22 agagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgt 121  Q
    ||||||||||||||||||| || | |||| ||||||||||||| ||||| |||||| ||||||||||||| |||||||||  | |||||| |||||||||    
T  19436178 agagaaaagagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgt 19436277  T
Q  122 atcattactc 131  Q
    ||||||||||    
T  19436278 atcattactc 19436287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 3694486 - 3694365
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||| ||||||| ||||| |||||| ||||||||| ||| |||||||||  | ||||||    
T  3694486 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagg 3694387  T
Q  112 gtgtctatgtatcattactcat 133  Q
    |||| ||| |||||||| ||||    
T  3694386 gtgtgtatatatcattattcat 3694365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 8238317 - 8238210
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatcta-agggtgtctatgtatca 125  Q
    |||||||||||||  |||| |||||||||  ||||||||||||| |||||| |||||||||||||||||||||||| | ||| ||||||| |||||||||    
T  8238317 aaagagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatca 8238218  T
Q  126 ttactcat 133  Q
    | ||||||    
T  8238217 taactcat 8238210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 35468836 - 35468955
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||| || ||||||||||||||||||| | |||||||| ||   |||| | | |||||||||||||||||||| | |||||||| ||||||||    
T  35468836 agagaagaggataggaaagagaaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaagg 35468935  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  35468936 atgtctatgtatcattactc 35468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 36208292 - 36208173
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||||||||| |||| |||| | ||||||||||||| ||||||||  ||||| |||||||||||| |  |||||| | | ||||||    
T  36208292 agagaagaggagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagg 36208193  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||| ||||    
T  36208192 gtgtctatgtatcataactc 36208173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 21234504 - 21234399
Alignment:
Q  28 aagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcatt 127  Q
    |||||||| |||| |||| |||||| || ||| |||| |||||||||||| |||| ||||||||||||||||||  | |||||| ||||||||||||||     
T  21234504 aagagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcata 21234405  T
Q  128 actcat 133  Q
    ||||||    
T  21234404 actcat 21234399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 38044301 - 38044197
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || |||||||||| |||||| ||||| |||||| ||||||||||| | |||||||||| ||||||||||    
T  38044301 aaagagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcat 38044202  T
Q  127 tactc 131  Q
     ||||    
T  38044201 aactc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 46033782 - 46033901
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||| | || |||| ||| || || ||||| || ||||| |||||||||||||||| |||||||||||||| | |||||     
T  46033782 agagaagaggagagaaaagagaaaatatgcttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaga 46033881  T
Q  112 gtgtctatgtatcattactc 131  Q
     | |||||||||||| ||||    
T  46033882 atatctatgtatcataactc 46033901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 22343465 - 22343361
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  ||   |||||||| |||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  22343465 aaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 22343366  T
Q  127 tactc 131  Q
     ||||    
T  22343365 aactc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 40846109 - 40846213
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    ||||||||||||| ||||| |||||||||  | ||||||||| | |||||| ||||| |||||| ||||||||||| | |||||| ||| ||||||||||    
T  40846109 aaagagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcat 40846208  T
Q  127 tactc 131  Q
     ||||    
T  40846209 aactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 41915845 - 41915741
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| ||| |||||||| ||||||||||| | |||||||||| ||||||||||    
T  41915845 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 41915746  T
Q  127 tactc 131  Q
     ||||    
T  41915745 aactc 41915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 35522995 - 35522881
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| |||| |||| ||||  || | || ||||| |||||| ||||||||| ||| |||||||||| |  |||||    
T  35522995 agagaagaagagagaaaagagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaagg 35522896  T
Q  112 gtgtctatgtatcat 126  Q
     ||||||||||||||    
T  35522895 atgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 32564422 - 32564527
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    ||||||||||||| ||||| |||||||||  |  | |||||||| |||||| |||||||||||| ||||||||||| | |||||  ||| ||||||||||    
T  32564422 aaagagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcat 32564521  T
Q  127 tactca 132  Q
     |||||    
T  32564522 aactca 32564527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 11044297 - 11044188
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  ||||| |||||||||||||  |||| |||||||||||||||||| |||||           |||||||||||| |||||||| | ||||||    
T  11044297 agagaagatgagaggaaagagaaagtgtacttgtgcggggtccacgtgactacgtgtcag----------gggtgtcaaaggatgtattgccacctaagg 11044208  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  11044207 gtgtctatgtatcattactc 11044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 41423801 - 41423681
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  ||||||||| | || ||||||||| || ||||||| |||||||| |||||| |||  |||||||  |||||||| | |||||| |    
T  41423801 agagaagaggagatgaaagagaaaatatgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatg 41423702  T
Q  112 gtgtctatgtatcattactca 132  Q
     |||||||||||||| |||||    
T  41423701 atgtctatgtatcataactca 41423681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 26296763 - 26296644
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||| || | |||| |||||||||  || | || | ||| |||||||||||| ||| ||||||| |||||  | ||||||    
T  26296763 agagaagaggagagaaaagagaaaatgcgcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaagg 26296664  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||| ||||    
T  26296663 atgtctatgtatcataactc 26296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 46374808 - 46374902
Alignment:
Q  37 tgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    |||| |||| ||||||||| ||| | || ||||| |||||| ||||||||| ||||||||| |||| | |||||| |||||||||||||| ||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 7728006 - 7727906
Alignment:
Q  31 agaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattact 130  Q
    |||||||||  |||| |||||||||  |||| |||||||| |||||||||||  ||||||  |||||||| | | |||||||||| |||||||||| |||    
T  7728006 agaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataact 7727907  T
Q  131 c 131  Q
    |    
T  7727906 c 7727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 18207298 - 18207180
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  |||||||||||||| ||||  ||||| |||||| | || ||| | |||||| | ||||||||||  |||||||||| | ||||||    
T  18207298 agagaagaggagatgaaagagaaagtgtgcttgtgtggggttcacgtgcc-acgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaagg 18207200  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||| ||||    
T  18207199 ttgtctatgtatcataactc 18207180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 31735996 - 31735882
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| |||| ||| | || |||       || ||||||||| |||| ||||||||| | ||||||    
T  31735996 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgt-------ttgtgtgggtgttaaagagtgtattgccacctaagg 31735904  T
Q  112 gtgtctatgtatcattactcat 133  Q
     |||||||||||||| ||||||    
T  31735903 atgtctatgtatcataactcat 31735882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 10343598 - 10343663
Alignment:
Q  66 tgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    ||||| |||||| ||||||||||||   ||||||| | | ||||||||||||||||||||||||||    
T  10343598 tgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactc 10343663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 39255905 - 39256024
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  |||||||||||||  ||||  || ||||||||| | || ||||| |||||| | ||||| ||||  |||||||||| | ||||||    
T  39255905 agagaagaggagatgaaagagaaagtgttcttgtgtggagtccacgtgcc-acgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaagg 39256003  T
Q  112 gtgtctatgtatcattactca 132  Q
     |||||||||||||| |||||    
T  39256004 ttgtctatgtatcataactca 39256024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 27744290 - 27744375
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgt 97  Q
    ||||||| |||||| | ||||||| |||| || |  ||| |||||||| | |||||||| |||||| ||||||| |||||||||||    
T  27744290 agagaagaggagaggatagagaaaatgtgcttatgagggatccacgtggccacatgtcagatttttgtgtgggtatcaaagggtgt 27744375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 32869797 - 32869674
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  32869797 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 32869698  T
Q  112 gtgtctatgtatcattactcataa 135  Q
    ||||||||||||| ||||||||||    
T  32869697 gtgtctatgtatctttactcataa 32869674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 22880639 - 22880755
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| | |||| |||||||||||||||||||||||| | ||||||    
T  22880639 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagg 22880738  T
Q  112 gtgtctatgtatcatta 128  Q
    |||||||||||||||||    
T  22880739 gtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 17598673 - 17598552
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||||||||| || ||||| |||||| ||||||||||||| | |||||||| | ||||||    
T  17598673 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagg 17598574  T
Q  112 gtgtctatgtatcattactcat 133  Q
    ||||||||||||||||||||||    
T  17598573 gtgtctatgtatcattactcat 17598552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 11427737 - 11427616
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatcta--a 109  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| ||||| |||||| ||||||||||||||| |||||||| | |||  |    
T  11427737 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaaga 11427638  T
Q  110 gggtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||||    
T  11427637 gggtgtctatgtatcattactc 11427616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 6209446 - 6209565
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| | || |||||||||||||||||| || || |||||| |||| ||||||||  ||||||||| | ||||||    
T  6209446 agagaagaggagagaaaagagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagg 6209545  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  6209546 gtgtctatgtatcattactc 6209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 29857946 - 29857827
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | ||||||||||||||||||| || | |||| ||||||| ||||| ||||| |||||| ||||||||| ||| |||||||||| |||||| |    
T  29857946 agagaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaag 29857847  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  29857846 gtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 31109389 - 31109501
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||  || | ||||||| |||||||||| ||||| |||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  31109389 ggagagaaaagagaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctat 31109488  T
Q  120 gtatcattactca 132  Q
      |||||||||||    
T  31109489 taatcattactca 31109501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 31976367 - 31976248
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||| || ||||| || ||||| |||||| ||||||||| ||||||| |||||| | ||||||    
T  31976367 agagaagaggagagaaaagagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaagg 31976268  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||| ||||    
T  31976267 atgtctatgtatcataactc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 31953026 - 31953132
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||||||||  | ||||||| |||  |||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||| ||||||    
T  31953026 aaagagaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcat 31953125  T
Q  127 tactcat 133  Q
    |||||||    
T  31953126 tactcat 31953132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 15832694 - 15832577
Alignment:
Q  14 agaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggt 113  Q
    ||||| ||||| |||||||||| ||| ||||| | || ||||||||||||| |||||||||||| ||||||||||||| | | |||||  | |||| |||    
T  15832694 agaagaggagaaaaaagagaaaatgtatttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggt 15832595  T
Q  114 gtctatgtatcattactc 131  Q
    ||||||||||||||||||    
T  15832594 gtctatgtatcattactc 15832577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 15508020 - 15508125
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  15508020 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 15508119  T
Q  127 tactca 132  Q
     |||||    
T  15508120 aactca 15508125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 15990038 - 15990142
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  15990038 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 15990137  T
Q  127 tactc 131  Q
     ||||    
T  15990138 aactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 23128116 - 23128196
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtatt 100  Q
    ||||||||||||||||||||| ||||  ||| ||||||||||||| ||||| |||||| ||||||||||||||| ||||||    
T  23128116 ggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtatt 23128196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 30341356 - 30341460
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  30341356 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 30341455  T
Q  127 tactc 131  Q
     ||||    
T  30341456 aactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 31110742 - 31110859
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | ||||||||||||||||||| |||| | ||||||| |||  ||| ||||| ||||||  ||| ||||||||||||||||||| | ||||||    
T  31110742 agagaagagtagagaaaagagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagattttt--gtgagtgtcaaagggtgtattgccacctaagg 31110839  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||| ||||    
T  31110840 atgtctatgtatcataactc 31110859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 946495 - 946377
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| | |  |||| |  |||||||||  ||||| ||||||  || ||||||||||||||||||   | ||||||    
T  946495 agagaagaggagagaaaagagaaagtgtgctagagcgggatttacgtgactaggtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaagg 946396  T
Q  112 gtgtctatgtatcattact 130  Q
     |||||||||||| |||||    
T  946395 atgtctatgtatcgttact 946377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 28536483 - 28536582
Alignment:
Q  26 aaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatca 125  Q
    ||||||||||||||| ||||  ||||||||| ||||  | ||||| |||||| |||||||||||| || |||||||| | |||||| ||| |||||||||    
T  28536483 aaaagagaaagtgtgcttgtgtggggtccacatgac--cgtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatca 28536580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 9379708 - 9379807
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    ||||||||| |||||||||  | | ||||| || | || |||||||||||| | |||||||||| || |||||||  |||||||| ||||||||||||||    
T  9379708 aaagagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcat 9379807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 4231652 - 4231547
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | || ||||| |||||| |||||||| ||| ||||||||||| | |||| | ||| |||| |||||    
T  4231652 aaagagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcat 4231553  T
Q  127 tactca 132  Q
     |||||    
T  4231552 aactca 4231547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 33149619 - 33149742
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||||| | | ||||||    
T  33149619 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagg 33149718  T
Q  112 gtgtctatgtatcattactcataa 135  Q
    ||||||||||||||||||||||||    
T  33149719 gtgtctatgtatcattactcataa 33149742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 36732923 - 36733042
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||  ||||| |||||| |||||||||||||||||||||||||| ||||||    
T  36732923 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagg 36733022  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  36733023 gtgtctatgtatcattactc 36733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 40145526 - 40145404
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||||| ||| |||||||||||||| | ||||||    
T  40145526 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagg 40145427  T
Q  112 gtgtctatgtatcattactcata 134  Q
    |||||||||||||||||||||||    
T  40145426 gtgtctatgtatcattactcata 40145404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 18520865 - 18520981
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||| ||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  18520865 agagaagaggagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 18520964  T
Q  112 gtgtctatgtatcatta 128  Q
    |||||||||||||||||    
T  18520965 gtgtctatgtatcatta 18520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 2740393 - 2740274
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  2740393 agagaaggggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 2740294  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  2740293 atgtctatgtatcattactc 2740274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 14831933 - 14831812
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||| |||| |||||||||| |||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||     
T  14831933 agagaagaggagaaaaaaaagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaaga 14831834  T
Q  112 gtgtctatgtatcattactcat 133  Q
    ||||||||||||||||||||||    
T  14831833 gtgtctatgtatcattactcat 14831812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 28177891 - 28177773
Alignment:
Q  15 gaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtg 114  Q
    |||| |||||||||||||||||||||||||| ||||||||| ||||| || ||||| |||||| |||||||||||||||||||||||| | |||||| ||    
T  28177891 gaagaggagagaaaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatg 28177792  T
Q  115 tctatgtatcattactcat 133  Q
    |||||||||||| ||||||    
T  28177791 tctatgtatcataactcat 28177773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 35785318 - 35785198
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| |||| |||| ||||||| ||||| ||||| |||||| ||||||||||||| |||||||||| | ||||||    
T  35785318 agagaagatgagagaaaagagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagg 35785219  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  35785218 gtgtctatgtatcattactca 35785198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 13811771 - 13811652
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||||||||||||| | |||||||| | ||||||    
T  13811771 agagaagaggagagagaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagg 13811672  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||| ||||||    
T  13811671 gtgtctatgtatctttactc 13811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 42414283 - 42414404
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||| |||||||| |||||||| |||| |||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||| | |||  |    
T  42414283 agagaagaggaaagaaaagataaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactg 42414382  T
Q  112 gtgtctatgtatcattactcat 133  Q
    ||||||||||||||||||||||    
T  42414383 gtgtctatgtatcattactcat 42414404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 6679817 - 6679698
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||| ||||| || ||||| |||||| ||||||||||||| |||||||||| | |||| |    
T  6679817 agagaagaggagagaaaagagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaag 6679718  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||| ||||    
T  6679717 atgtctatgtatcataactc 6679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 15409591 - 15409710
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||| |||||| |||| ||||||||| ||| |||| ||||| |||||| ||||||||||||||  |||||||  | ||||||    
T  15409591 agagaagaggagagaaaagagagagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaagg 15409690  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||| ||||    
T  15409691 atgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 35943881 - 35943992
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    |||||| |||||||||||||| ||||  ||| ||||||| ||||| ||||| |||||| ||||||||||||| | |||||||| | ||||||||||||||    
T  35943881 ggagaggaaagagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctat 35943980  T
Q  120 gtatcattactc 131  Q
    ||||||| ||||    
T  35943981 gtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 36875593 - 36875702
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||| ||||||||||||||| |||| |||| ||||||||||||         ||||| |||||||||||||||||||||||| | ||||||    
T  36875593 agagaagaggagaaaaaagagaaagtgtgcttgtgcgggatccacgtgacta---------tttttgtgtgggtgtcaaagggtgtattgccacctaagg 36875683  T
Q  112 gtgtctatgtatcattact 130  Q
    |||||||||||||||||||    
T  36875684 gtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 8338818 - 8338871
Alignment:
Q  209 tcttgaagaagcttagtagcttgttttccctctttctcttgttaagggagatac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8338818 tcttgaagaagcttagtagcttgttttccctctttctcttgttaagggagatac 8338871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 26720635 - 26720515
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | ||||||||||||||||||| |||| |||| |||| ||| | || ||||| |||||| ||| ||||| |||||||||||||| | ||||||    
T  26720635 agagaagagaagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaagg 26720536  T
Q  112 gtgtctatgtatcattactca 132  Q
     |||||||||||||| |||||    
T  26720535 atgtctatgtatcataactca 26720515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 26990384 - 26990264
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | ||||||||||||||||||| |||| |||| |||| ||| | || ||||| |||||| ||| ||||| |||||||||||||| | ||||||    
T  26990384 agagaagagaagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaagg 26990285  T
Q  112 gtgtctatgtatcattactca 132  Q
     |||||||||||||| |||||    
T  26990284 atgtctatgtatcataactca 26990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 3921261 - 3921365
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  3921261 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 3921360  T
Q  127 tactc 131  Q
     ||||    
T  3921361 aactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 2252164 - 2252268
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||| | |||||| ||| ||||||||||    
T  2252164 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcat 2252263  T
Q  127 tactc 131  Q
     ||||    
T  2252264 aactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 20073497 - 20073616
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||| |||||||||| |||| | |||||||||||   || ||  | ||||||||||| ||||||||||||||||||  |||||| |    
T  20073497 agagaagaggagaggaaatagaaagtgtgcttgtgcagggtccacgtggtcacgtgcaagatttttatgtgagtgtcaaagggtgtattgtcatctaatg 20073596  T
Q  112 gtgtctatgtatcattactc 131  Q
     ||||||| |||||||||||    
T  20073597 atgtctatatatcattactc 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 31009107 - 31008988
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | |||| ||| |||||||||| |||| |||| ||||||||||||| ||||| |||||| |||||||||  |||  |||||||  | ||||||    
T  31009107 agagaagagaagaggaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaagg 31009008  T
Q  112 gtgtctatgtatcattactc 131  Q
     ||| |||||||||| ||||    
T  31009007 atgtttatgtatcataactc 31008988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 21370114 - 21370048
Alignment:
Q  21 gagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgt 87  Q
    ||||| ||||||||| ||||||||| ||||||||||||||| |||||||| ||||||  ||||||||    
T  21370114 gagaggaaagagaaaatgtgtttgtgcggggtccacgtgaccacatgtcagatttttgagtgggtgt 21370048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 41470427 - 41470516
Alignment:
Q  42 ttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattactc 131  Q
    |||| |||||||||||||||||| ||||| |||||||| ||  | | ||||| |||||||| | |||| ||||||||||||| |||||||    
T  41470427 ttgtgcggggtccacgtgactacgtgtcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgtattattactc 41470516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 33825305 - 33825424
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | ||| ||||||||||||||| ||||    ||| ||| |||  || ||||| ||||||||||||||||||| | ||||||||| | |||||     
T  33825305 agagaagagaagataaaagagaaagtgtgcttgtgtaaggttcacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaaga 33825404  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||| ||||||||||    
T  33825405 atgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 31132454 - 31132392
Alignment:
Q  21 gagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgg 83  Q
    ||||||||||| ||||| || |||| |||||||||||||||||| ||||| |||||| |||||    
T  31132454 gagagaaaagaaaaagtatgcttgtgcggggtccacgtgactacttgtcagatttttgtgtgg 31132392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 39557498 - 39557586
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtatt 100  Q
    ||||||| ||||| ||||||||||||||| ||||| |||||||| ||||  || ||||| |||||| ||||| ||| ||  ||||||||    
T  39557498 agagaagaggagataaaagagaaagtgtgattgtatggggtccatgtgatcacgtgtcagatttttgtgtggatgttaagaggtgtatt 39557586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 39688893 - 39688997
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  || | |||||| ||  |||| |||| ||| |||||| |||||||||||| || |||||||| |  ||||||||| ||||||||||    
T  39688893 aaagagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcat 39688992  T
Q  127 tactc 131  Q
     ||||    
T  39688993 aactc 39688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 6259982 - 6260102
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  |||||||||||||| || |  | |||||| ||||| |  ||| | ||||||  |||||||| |||||||||||||  | ||| ||    
T  6259982 agagaagaggagatgaaagagaaagtgtgcttctgtgaggtccatgtgaccatgtgttagatttttgcgtgggtgttaaagggtgtattgtcacctatgg 6260081  T
Q  112 gtgtctatgtatcattactca 132  Q
     ||| ||||||||||||||||    
T  6260082 ttgtgtatgtatcattactca 6260102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 9603917 - 9603813
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||| ||||| ||||||||  |||| |  ||||| |||||| ||| ||||| || | |||||||   | |||||| ||| ||||||||||    
T  9603917 aaagagaaagtgtgattgtatggggtccatatgaccatgtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcat 9603818  T
Q  127 tactc 131  Q
    |||||    
T  9603817 tactc 9603813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 16327966 - 16327902
Alignment:
Q  66 tgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcattact 130  Q
    ||||| ||||||||||||||||||| || |||||||| | |||||| | | ||| ||||||||||    
T  16327966 tgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcattact 16327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 17473139 - 17473020
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||||    
T  17473139 agagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagg 17473040  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  17473039 gtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 30915582 - 30915463
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| | ||||||    
T  30915582 agagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagg 30915483  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  30915482 gtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 9058599 - 9058480
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  9058599 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 9058500  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  9058499 gtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 13438462 - 13438341
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||  | ||||||    
T  13438462 agagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagg 13438363  T
Q  112 gtgtctatgtatcattactcat 133  Q
    ||||||||||||||||||||||    
T  13438362 gtgtctatgtatcattactcat 13438341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 19930801 - 19930922
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||| ||||| |||||||||||||||||| | ||||||    
T  19930801 agagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagg 19930900  T
Q  112 gtgtctatgtatcattactcat 133  Q
    ||||||||||||||||| ||||    
T  19930901 gtgtctatgtatcattattcat 19930922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 28863574 - 28863458
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||| ||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  28863574 agagaagaggagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 28863475  T
Q  112 gtgtctatgtatcatta 128  Q
    |||||||||||||||||    
T  28863474 gtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 7465716 - 7465835
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||| ||||||||||||||| ||||  ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||||    
T  7465716 agagaagaagagataaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagg 7465815  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  7465816 gtgtctatgtatcattactc 7465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 5574479 - 5574588
Alignment:
Q  22 agagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgt 121  Q
    ||||||||||||||||||| |||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||    
T  5574479 agagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgt 5574578  T
Q  122 atcattactc 131  Q
    ||||||||||    
T  5574579 atcattactc 5574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 40701597 - 40701477
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| |||| |||||||||||| ||||| ||||| |||||| ||||||||||||| |||||||||| | ||||||    
T  40701597 agagaagatgagagaaaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagg 40701498  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  40701497 gtgtctatgtatcattactca 40701477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 10249371 - 10249482
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||  | ||||||||||||||    
T  10249371 ggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctat 10249470  T
Q  120 gtatcattactc 131  Q
    ||||||||||||    
T  10249471 gtatcattactc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 32505629 - 32505748
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||||||| |||||||||| |||| |||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||  | ||||||    
T  32505629 agagaagaggagagaaaatagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagg 32505728  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  32505729 gtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 33436081 - 33436200
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  ||||| |||||||||||||| |||| |||||||||||||||||| ||| | |||||| |||||||||||||||||||||||| | ||||||    
T  33436081 agagaagatgagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 33436180  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  33436181 gtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 28381636 - 28381759
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  |||||||||||||||||||| |||| ||| ||||| |||||||| ||||| |||||| |||||||||| || |||||||||| | ||||||    
T  28381636 agagaagatgagagaaaagagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagg 28381735  T
Q  112 gtgtctatgtatcattactcataa 135  Q
    ||||||||||||||||||||||||    
T  28381736 gtgtctatgtatcattactcataa 28381759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 40613891 - 40614004
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| |||| ||||||||| ||| | || ||||| |||||| |||||||||||||||||||||||| | |||||| |||||||    
T  40613891 ggagagaaaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctat 40613990  T
Q  120 gtatcattactcat 133  Q
    ||||||| ||||||    
T  40613991 gtatcataactcat 40614004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 20700934 - 20700815
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| |||||||||||||| || | |||||||||||||||||| ||||| |||||| ||| || ||||||||||||||||| |  |||||    
T  20700934 agagaagaggagaggaaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataagg 20700835  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  20700834 atgtctatgtatcattactc 20700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 27864808 - 27864702
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||| || | |||||||||||||| ||| ||||| |||||| ||||| |||||||||||||||||| |  ||||||||||||||||||||    
T  27864808 aaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcat 27864709  T
Q  127 tactcat 133  Q
    |||||||    
T  27864708 tactcat 27864702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 38273131 - 38273242
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    ||||||||||||||||||||| | || ||||||||| ||| |||| ||||| |||||| ||||||||| |||||||||||||| |||||||  |||||||    
T  38273131 ggagagaaaagagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctat 38273230  T
Q  120 gtatcattactc 131  Q
    ||||||| ||||    
T  38273231 gtatcataactc 38273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 42257310 - 42257193
Alignment:
Q  14 agaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggt 113  Q
    ||||| ||||||||||||||||||||| |||| ||||||||| ||| | || ||||| |||||||||||||||||||| | |||||||| | |||| | |    
T  42257310 agaagaggagagaaaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagat 42257211  T
Q  114 gtctatgtatcattactc 131  Q
    ||||||||||||| ||||    
T  42257210 gtctatgtatcataactc 42257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 4060804 - 4060684
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    |||||||  ||||||||| |||||||||| || | |||| ||||||| ||||| ||||| |||||| ||||| ||||||| |||||||||  | ||||||    
T  4060804 agagaagatgagagaaaaaagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagg 4060705  T
Q  112 gtgtctatgtatcattactca 132  Q
    |||||||||||||||||||||    
T  4060704 gtgtctatgtatcattactca 4060684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 26891485 - 26891604
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | |||| ||||||||| |||| |||| || |||||||||||| |||||||| |||||| |||||||||| | ||||||||||| | ||||||    
T  26891485 agagaagagaagaggaaagagaaaatgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagg 26891584  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||| ||||||||||| ||||    
T  26891585 gtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 41575257 - 41575138
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtac-ggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaag 110  Q
    ||||||| |||||  |||||||||||||| ||||   ||||||||| |||| ||||||||||||||| ||||  |||||||||||||||| | |||||||    
T  41575257 agagaagaggagatgaaagagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaag 41575158  T
Q  111 ggtgtctatgtatcattact 130  Q
    | ||||||||||||||||||    
T  41575157 gatgtctatgtatcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 38882802 - 38882913
Alignment:
Q  22 agagaaaagagaaagtgtgtttgtacgggg---tccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtcta 118  Q
    ||||||||||||||||| | |||| |||||   ||||||||||||| ||||| |||||| ||||| ||||||||||| |||||| | |||||||||||||    
T  38882802 agagaaaagagaaagtgcgcttgtgcgggggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtcta 38882900  T
Q  119 tgtatcattactc 131  Q
    |||||||||||||    
T  38882901 tgtatcattactc 38882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 17819985 - 17820105
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||  ||||||||| |||||||||  ||||||||||| || |||||||| |||||| |||||||||||| ||||||||||| | |||  |    
T  17819985 agagaagaggagatgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatag 17820084  T
Q  112 gtgtctatgtatcattactca 132  Q
     |||||||||||||| |||||    
T  17820085 ttgtctatgtatcataactca 17820105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 33436330 - 33436211
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||| || |||||||||||||| |||| |   |||||| ||   || ||||| |||||||||||||||||||| |||||||||| ||||||||    
T  33436330 agagaagaggataggaaagagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaagg 33436231  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||||||||    
T  33436230 atgtctatgtatcattactc 33436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 36168947 - 36168836
Alignment:
Q  20 ggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctat 119  Q
    |||||||||||||||||| || |||| ||||||||| ||| | || |||||||||||| |||||| || ||||| |||||||  |||||||| |||||||    
T  36168947 ggagagaaaagagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctat 36168848  T
Q  120 gtatcattactc 131  Q
    ||||||| ||||    
T  36168847 gtatcataactc 36168836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 3440098 - 3439985
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| ||||||||| |||| |||| |||||||||||| |  |||||| | |||||| |||||||||| | | ||||||||| | ||||||    
T  3440098 agagaagaggagaggaaagagaaaatgtgcttgtgcggggtccacgtaatcacatgttagatttttgtgtgggtgtccaggagtgtattgccacctaagg 3439999  T
Q  112 gtgtctatgtatca 125  Q
    ||||||| ||||||    
T  3439998 gtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 2533242 - 2533124
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||| |||||| |||||||| |||| ||||||| | ||| |||| ||||| |||||| ||||| ||||||||| |||||||| |  |||||    
T  2533242 agagaagaggagataaaagaaaaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaagg 2533144  T
Q  112 gtgtctatgtatcattactc 131  Q
     |||||||||||||| ||||    
T  2533143 atgtctatgtatcataactc 2533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 43490225 - 43490119
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    ||||| |||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||  | |||||||||| ||||||||||    
T  43490225 aaagataaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcat 43490126  T
Q  127 tactcat 133  Q
     ||||||    
T  43490125 aactcat 43490119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 38732458 - 38732354
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  |||| |||||||| |||||| |||||||||||| || |||||||  |  ||||||||| ||||||||||    
T  38732458 aaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcat 38732359  T
Q  127 tactc 131  Q
     ||||    
T  38732358 aactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 2997483 - 2997569
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggt 113  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| |||||||||||| ||||||||||| | ||||||||    
T  2997483 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 2997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 13365457 - 13365369
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgt 115  Q
    |||||||||||||  |||| |||||||||  ||   |||||||| |||||| |||||||||||| |||| |||||| ||||||||||||    
T  13365457 aaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtatattgccatctaagggtgt 13365369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 45097731 - 45097835
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    |||||||||||||  |||| |||||||||  || | |||||||| |||||| | |||||||||| || |||||||| | |||||| ||| ||||||||||    
T  45097731 aaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcat 45097830  T
Q  127 tactc 131  Q
     ||||    
T  45097831 aactc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 10090 - 10209
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||| ||||||||| |||||||| | |||| |    
T  10090 agagaagaggagagaaaagagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaag 10189  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||| ||||    
T  10190 gtgtctatgtatcataactc 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 4148 - 4029
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| | ||||||||||||||||||| || | |||| ||||||| ||||| ||||| |||||| ||||||||| ||| |||||||||| |||||| |    
T  4148 agagaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaag 4049  T
Q  112 gtgtctatgtatcattactc 131  Q
    ||||||||||||||||||||    
T  4048 gtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 910 - 1031
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| |||||||||||||| |||| |||| | ||||||||||| |||||  ||||| ||||| ||| |||||||||||||| | |||| |    
T  910 agagaagaggagaggaaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaag 1009  T
Q  112 gtgtctatgtatcattactcat 133  Q
     |||||||||||||||||||||    
T  1010 atgtctatgtatcattactcat 1031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 910 - 1031
Alignment:
Q  12 agagaagcggagagaaaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagg 111  Q
    ||||||| |||||| |||||||||||||| |||| |||| | ||||||||||| |||||  ||||| ||||| ||| |||||||||||||| | |||| |    
T  910 agagaagaggagaggaaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaag 1009  T
Q  112 gtgtctatgtatcattactcat 133  Q
     |||||||||||||||||||||    
T  1010 atgtctatgtatcattactcat 1031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 152602 - 152514
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgt 115  Q
    ||||||||||||| ||||| |||| ||||  |||| |||||||| |||||| |||||||||||| ||||||||||| | | ||||||||    
T  152602 aaagagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagggtgt 152514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 8859 - 8964
Alignment:
Q  27 aaagagaaagtgtgtttgtacggggtccacgtgactacatgtcaaatttttatgtgggtgtcaaagggtgtattgctatctaagggtgtctatgtatcat 126  Q
    ||||||||| |||  ||||  ||||||||||||||||  |||||||||||| ||| | |||||||  ||||||||  |  ||||| ||||||| ||||||    
T  8859 aaagagaaaatgtacttgtgtggggtccacgtgactatgtgtcaaatttttgtgtagatgtcaaatagtgtattgtcacttaaggatgtctatatatcat 8958  T
Q  127 tactca 132  Q
     |||||    
T  8959 aactca 8964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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