View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_28 (Length: 253)
Name: NF20484_low_28
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 5254958 - 5255189
Alignment:
| Q |
5 |
gagagagaagaattaaatgatgtgacttaaattatttccctgttaaatttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtgtcca |
104 |
Q |
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| T |
5254958 |
gagagaaaagaattaaatgatgtgacttaaattatttctcttttaaatttttacatttatgtgtgtgcattcaaataaatttgatttggggttgtgtcca |
5255057 |
T |
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| Q |
105 |
aatcaaaatttctcgtttctcttatgagtttcctctctttcatccataataaatttgtaacgtgcatctctataacactcattaaatctctcgttccctt |
204 |
Q |
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| T |
5255058 |
aaccaaaatttctcgtttctcttatgagtttcctcactttcatctataataaatttgtaacgtgcatctctataacactcattaaatctttcgttccctt |
5255157 |
T |
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| Q |
205 |
ttttgaaccaaacagacctttactattttttc |
236 |
Q |
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| T |
5255158 |
ttttgaaccaaacagacctttactattttttc |
5255189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 31012642 - 31012554
Alignment:
| Q |
16 |
attaaatgatgtgacttaaattatttccctgttaaatttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtgtccaa |
105 |
Q |
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| T |
31012642 |
attaaatgatgtgact-aaattatttctcttttaagttttaccatatatgtgtgtttgcccaaatacttttgatttggggttgtgtccaa |
31012554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 10376233 - 10376324
Alignment:
| Q |
13 |
agaattaaatgatgtgacttaaattatttccctgttaaatttt-tgcatttatgtgt--gtgcgcccaaataaatttgatttggggttgtgt |
101 |
Q |
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| T |
10376233 |
agaattaaatgatgtgacttaaatcatttctcttttaatttttatacatttgtgtgtgcgtgcgtccaaataaatttgatttgtggttgtgt |
10376324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 14502779 - 14502692
Alignment:
| Q |
17 |
ttaaatgatgtgacttaaattatttccctgttaaatttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtgtccaa |
105 |
Q |
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| T |
14502779 |
ttaagtgatgtgact-aaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaa |
14502692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 31133898 - 31133982
Alignment:
| Q |
12 |
aagaattaaatgatgtgacttaaattatttccctgttaaatttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtg |
100 |
Q |
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| T |
31133898 |
aagaattaaatgatttgacttaaatcatatctctttttattttttacatttatgtgtgt----ccaaataaatttgatttgaggttgtg |
31133982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 25009141 - 25009093
Alignment:
| Q |
52 |
tttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtg |
100 |
Q |
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| T |
25009141 |
tttttacatttaagtgtgtgtgcccaaataaatttgatttgggtttgtg |
25009093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 32943545 - 32943499
Alignment:
| Q |
59 |
atttatgtgtgtgcgcccaaataaatttgatttggggttgtgtccaa |
105 |
Q |
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| T |
32943545 |
atttatgtgtgtgcgtccaaatacttttgatttgtggttgtgtccaa |
32943499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 36801931 - 36801895
Alignment:
| Q |
64 |
tgtgtgtgcgcccaaataaatttgatttggggttgtg |
100 |
Q |
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| T |
36801931 |
tgtgtgtgcgcccaaataaatttgatttgggtttgtg |
36801895 |
T |
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