View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20484_low_3 (Length: 585)
Name: NF20484_low_3
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 7705357 - 7705827
Alignment:
| Q |
18 |
ttatgaaggtcccagcaaatagcttcatataagctcaaagacatatttatcagtttcatataaatattcatttggttctacaatgtgtccagcgaccgac |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
7705357 |
ttatgaaggtcccagcaaatagctttatataagctcaaagacatatttatcagtttcatataaatattcatttg-ttctacaatg-gtccagcgaccgaa |
7705454 |
T |
|
| Q |
118 |
aaattcaattctgcagattcatggcaccaacctgtgtatcagaaattaaattttaccgtgattcaaatcatgtagaatgttttgccaatgtcattcttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705455 |
aaattcaattctgcagattcatggcaccaacctgtgtatcagaaattaaattttacagtgattcaaatcatgtagaatgttttgccaatgtcattcttca |
7705554 |
T |
|
| Q |
218 |
atagcaatataaaccatgtagatcctttaagcaataaaattattaattgttaatgcttatcgctaattctaaccagtgcatcatattggattacgtaagg |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||| ||||||||| |
|
|
| T |
7705555 |
atagcaatataagccatgtagatcctttaagcaataaaattattaattgttaatgcttatcgctaatgccaatcagtgcataata------tacgtaagg |
7705648 |
T |
|
| Q |
318 |
aa-----------agggatgaaatatgaaaaggaaattaagaaataaatagaggaaaatggaagtaattgaaacatgaatttccttattattgacaacat |
406 |
Q |
| |
|
|| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705649 |
aagggatgaaatgaggaatgatatatgaaaaggaaattaagaaataaatagaggaaaatggaagtaattgaaacatgaatttccttattattgacaacat |
7705748 |
T |
|
| Q |
407 |
gatttcaaaact-taagtacataataattcaactattcagatagtaatataatcgattttacatgtgcacaatatataacc |
486 |
Q |
| |
|
||||| |||| | || ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
7705749 |
gattttaaaattcaaaatacataataattcaactattcagatagta--ataatcaattttacatgtgaacaatatataacc |
7705827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 519 - 570
Target Start/End: Original strand, 7705887 - 7705938
Alignment:
| Q |
519 |
taaagactacgctacaattcttcatatatcttcaaacttttatccatgttat |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705887 |
taaagactacgctacaattcttcatatatcttcaaacttttatccatgttat |
7705938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University