View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20484_low_30 (Length: 242)

Name: NF20484_low_30
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20484_low_30
NF20484_low_30
[»] chr1 (29 HSPs)
chr1 (9-137)||(5979710-5979838)
chr1 (138-242)||(27564653-27564756)
chr1 (138-242)||(41758884-41758987)
chr1 (142-242)||(50630537-50630636)
chr1 (138-242)||(9474794-9474897)
chr1 (142-242)||(32813326-32813425)
chr1 (139-239)||(37649280-37649379)
chr1 (138-242)||(48716200-48716303)
chr1 (138-242)||(2581994-2582097)
chr1 (138-240)||(47452238-47452339)
chr1 (154-242)||(38632255-38632342)
chr1 (138-239)||(43214-43314)
chr1 (138-242)||(8346305-8346409)
chr1 (142-239)||(49811449-49811545)
chr1 (158-242)||(45044498-45044581)
chr1 (137-242)||(3000398-3000502)
chr1 (138-242)||(38595233-38595336)
chr1 (154-240)||(37926372-37926457)
chr1 (142-240)||(51898605-51898702)
chr1 (154-242)||(11152312-11152399)
chr1 (142-236)||(44454064-44454161)
chr1 (188-242)||(44548343-44548397)
chr1 (168-242)||(5958948-5959021)
chr1 (168-242)||(50590948-50591021)
chr1 (138-237)||(26274516-26274611)
chr1 (142-242)||(41608415-41608514)
chr1 (187-242)||(13414840-13414895)
chr1 (142-240)||(47748523-47748620)
chr1 (142-186)||(6261004-6261048)
[»] chr8 (26 HSPs)
chr8 (138-242)||(12831126-12831229)
chr8 (138-242)||(504039-504142)
chr8 (138-240)||(34012214-34012315)
chr8 (137-242)||(23122514-23122618)
chr8 (138-242)||(14548001-14548104)
chr8 (142-242)||(40423865-40423964)
chr8 (138-240)||(9122266-9122367)
chr8 (136-242)||(15197412-15197517)
chr8 (142-242)||(8841354-8841453)
chr8 (138-242)||(44507006-44507108)
chr8 (142-240)||(43414503-43414600)
chr8 (138-239)||(1179858-1179958)
chr8 (142-240)||(5957911-5958008)
chr8 (138-224)||(42710212-42710297)
chr8 (142-242)||(4854785-4854884)
chr8 (142-242)||(10284553-10284652)
chr8 (142-233)||(42354510-42354600)
chr8 (142-240)||(37038560-37038657)
chr8 (154-242)||(15048115-15048203)
chr8 (141-242)||(24307714-24307814)
chr8 (142-242)||(16056323-16056422)
chr8 (193-240)||(10621059-10621106)
chr8 (142-242)||(34307295-34307394)
chr8 (142-242)||(32707925-32708026)
chr8 (141-238)||(30479395-30479491)
chr8 (176-242)||(16383456-16383521)
[»] chr6 (20 HSPs)
chr6 (138-242)||(22880576-22880679)
chr6 (138-240)||(11427699-11427800)
chr6 (138-242)||(17598633-17598736)
chr6 (142-242)||(31976327-31976426)
chr6 (138-242)||(32869757-32869860)
chr6 (138-240)||(29857908-29858009)
chr6 (138-242)||(6209384-6209486)
chr6 (138-236)||(23128044-23128142)
chr6 (158-242)||(28536426-28536509)
chr6 (142-242)||(31110683-31110782)
chr6 (141-224)||(15832674-15832756)
chr6 (142-236)||(31952952-31953045)
chr6 (139-232)||(946465-946557)
chr6 (142-242)||(4231627-4231726)
chr6 (171-242)||(31109351-31109421)
chr6 (142-242)||(15989964-15990063)
chr6 (142-242)||(30341282-30341381)
chr6 (142-184)||(22422001-22422043)
chr6 (142-242)||(15507946-15508045)
chr6 (154-242)||(30870093-30870180)
[»] chr4 (26 HSPs)
chr4 (138-240)||(6034125-6034226)
chr4 (138-242)||(41236426-41236529)
chr4 (138-242)||(48182967-48183070)
chr4 (138-242)||(42044285-42044388)
chr4 (138-242)||(24995025-24995128)
chr4 (142-242)||(41823961-41824060)
chr4 (140-242)||(54473453-54473554)
chr4 (138-242)||(11511381-11511483)
chr4 (142-242)||(31910271-31910370)
chr4 (154-240)||(40574860-40574945)
chr4 (142-242)||(29239965-29240064)
chr4 (168-242)||(480395-480468)
chr4 (138-236)||(23608320-23608417)
chr4 (138-242)||(29234173-29234266)
chr4 (142-242)||(50052350-50052449)
chr4 (138-242)||(53352492-53352587)
chr4 (142-239)||(50526093-50526189)
chr4 (142-242)||(19670638-19670737)
chr4 (168-242)||(17983691-17983764)
chr4 (142-242)||(50813814-50813913)
chr4 (142-242)||(55475270-55475369)
chr4 (142-240)||(29547881-29547978)
chr4 (168-242)||(47986287-47986360)
chr4 (189-239)||(48647694-48647744)
chr4 (142-239)||(18924417-18924513)
chr4 (160-237)||(56300105-56300181)
[»] chr7 (34 HSPs)
chr7 (138-242)||(19329921-19330024)
chr7 (138-242)||(4999432-4999535)
chr7 (138-242)||(8080301-8080404)
chr7 (138-242)||(32951411-32951514)
chr7 (138-242)||(38837296-38837399)
chr7 (138-242)||(35137612-35137715)
chr7 (142-240)||(35522957-35523054)
chr7 (138-240)||(40957788-40957889)
chr7 (147-240)||(19436114-19436206)
chr7 (142-239)||(46033723-46033819)
chr7 (160-240)||(31735958-31736037)
chr7 (138-242)||(38267119-38267222)
chr7 (160-240)||(3784076-3784155)
chr7 (138-242)||(7389468-7389570)
chr7 (138-242)||(11044257-11044360)
chr7 (168-240)||(3694448-3694519)
chr7 (142-242)||(21234480-21234579)
chr7 (142-236)||(16374746-16374839)
chr7 (142-224)||(41423779-41423860)
chr7 (138-207)||(3434666-3434734)
chr7 (154-242)||(26296723-26296810)
chr7 (138-210)||(36362125-36362196)
chr7 (168-242)||(8238292-8238365)
chr7 (138-183)||(36361843-36361888)
chr7 (142-242)||(22343440-22343539)
chr7 (142-242)||(35468777-35468876)
chr7 (142-242)||(38044276-38044375)
chr7 (142-242)||(41915820-41915919)
chr7 (142-201)||(46374746-46374804)
chr7 (160-242)||(18207258-18207339)
chr7 (154-233)||(27744243-27744321)
chr7 (168-242)||(32564374-32564447)
chr7 (188-242)||(36208252-36208306)
chr7 (142-242)||(7727985-7728084)
[»] chr2 (31 HSPs)
chr2 (138-242)||(10249300-10249403)
chr2 (138-242)||(13438422-13438525)
chr2 (138-240)||(17473101-17473202)
chr2 (128-242)||(28863534-28863647)
chr2 (138-242)||(19930738-19930841)
chr2 (138-242)||(32505566-32505669)
chr2 (137-242)||(9058559-9058663)
chr2 (140-242)||(33436020-33436121)
chr2 (138-242)||(7465653-7465756)
chr2 (138-242)||(40701557-40701660)
chr2 (138-241)||(38882729-38882831)
chr2 (138-239)||(28381573-28381673)
chr2 (142-242)||(20700894-20700993)
chr2 (142-242)||(36168915-36169014)
chr2 (138-240)||(4060766-4060867)
chr2 (137-242)||(30915542-30915646)
chr2 (150-242)||(2533202-2533293)
chr2 (142-242)||(40613824-40613923)
chr2 (147-242)||(38273070-38273163)
chr2 (147-242)||(42257272-42257366)
chr2 (142-236)||(44152012-44152105)
chr2 (138-210)||(5574418-5574489)
chr2 (142-224)||(41758684-41758765)
chr2 (142-242)||(13365432-13365531)
chr2 (138-201)||(27864811-27864873)
chr2 (168-242)||(2997435-2997508)
chr2 (142-242)||(43490200-43490299)
chr2 (54-100)||(44728659-44728705)
chr2 (142-235)||(17823874-17823966)
chr2 (142-242)||(38732433-38732532)
chr2 (188-236)||(41575223-41575271)
[»] chr5 (25 HSPs)
chr5 (138-240)||(33149556-33149657)
chr5 (138-242)||(18520802-18520905)
chr5 (138-242)||(40145486-40145589)
chr5 (138-240)||(2740355-2740456)
chr5 (136-240)||(14831895-14831998)
chr5 (138-240)||(35785280-35785381)
chr5 (137-242)||(13811731-13811834)
chr5 (142-242)||(15409532-15409631)
chr5 (154-242)||(36732876-36732963)
chr5 (158-240)||(26720597-26720678)
chr5 (158-240)||(26990346-26990427)
chr5 (142-242)||(6679777-6679876)
chr5 (142-240)||(31009069-31009166)
chr5 (154-236)||(33825258-33825339)
chr5 (142-240)||(36875538-36875631)
chr5 (142-236)||(35943814-35943907)
chr5 (160-236)||(2177449-2177524)
chr5 (185-242)||(28177854-28177911)
chr5 (138-207)||(31132448-31132516)
chr5 (142-242)||(2252090-2252189)
chr5 (142-242)||(3921187-3921286)
chr5 (138-184)||(16115250-16115296)
chr5 (194-242)||(42414275-42414323)
chr5 (160-235)||(39557457-39557531)
chr5 (160-242)||(20073456-20073537)
[»] chr3 (33 HSPs)
chr3 (138-242)||(33644279-33644382)
chr3 (138-242)||(53982090-53982193)
chr3 (138-242)||(31456768-31456871)
chr3 (142-242)||(20764837-20764936)
chr3 (131-236)||(49607499-49607603)
chr3 (142-242)||(8076472-8076571)
chr3 (138-242)||(17470484-17470587)
chr3 (138-242)||(54868813-54868916)
chr3 (142-242)||(51419282-51419381)
chr3 (138-242)||(52629379-52629482)
chr3 (142-242)||(11347844-11347943)
chr3 (139-231)||(36707347-36707438)
chr3 (142-242)||(30801655-30801754)
chr3 (142-242)||(41189686-41189785)
chr3 (142-242)||(47531944-47532043)
chr3 (142-236)||(35536711-35536804)
chr3 (140-237)||(9563083-9563179)
chr3 (138-210)||(11095285-11095356)
chr3 (142-242)||(26141452-26141553)
chr3 (142-237)||(35965704-35965798)
chr3 (142-242)||(36331251-36331350)
chr3 (139-210)||(27714822-27714892)
chr3 (142-236)||(14623761-14623854)
chr3 (138-207)||(48587019-48587087)
chr3 (142-236)||(8956847-8956940)
chr3 (142-242)||(45058475-45058574)
chr3 (195-242)||(26754774-26754821)
chr3 (195-242)||(48375680-48375727)
chr3 (167-224)||(1758404-1758459)
chr3 (204-242)||(11907450-11907488)
chr3 (154-236)||(13897989-13898070)
chr3 (142-224)||(43746436-43746517)
chr3 (154-230)||(33118784-33118860)
[»] scaffold0237 (1 HSPs)
scaffold0237 (138-240)||(4110-4211)
[»] scaffold0321 (1 HSPs)
scaffold0321 (138-235)||(10027-10123)
[»] scaffold1268 (1 HSPs)
scaffold1268 (142-240)||(851-948)
[»] scaffold1267 (1 HSPs)
scaffold1267 (142-240)||(851-948)
[»] scaffold0110 (1 HSPs)
scaffold0110 (142-242)||(8785-8884)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 5979838 - 5979710
Alignment:
Q  9 gacatcatcaacacatcacatcccaacatatttgtacactcttgattttcatacactcattctacaccatattttctctctatctatctcttaaggtaga 108  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5979838 gacatcatcaacacatcacatcctaacatatttgtacacccttgattttcatacactcattctacaccatattttctctctatctatctcttaaggtaga 5979739  T
Q  109 gttttgccgctcctatggtatattttgac 137  Q
    |||||||||||||||||||||||||||||    
T  5979738 gttttgccgctcctatggtatattttgac 5979710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 27564653 - 27564756
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  27564653 gagtaatgatacatagacaccctttattcccatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 27564751  T
Q  238 ggggt 242  Q
    |||||    
T  27564752 ggggt 27564756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 41758987 - 41758884
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  41758987 gagtaatgatacatagacaccctttattctcatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgc 41758889  T
Q  238 ggggt 242  Q
    |||||    
T  41758888 ggggt 41758884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 50630636 - 50630537
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||||| |||| |||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  50630636 aatgatgcatagacaccatttattctcatacacccttgtacaccct-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggg 50630538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 9474794 - 9474897
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  9474794 gagtaatgatacatagacactctttattctcatacacccttgtacatccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgc 9474892  T
Q  238 ggggt 242  Q
    |||||    
T  9474893 ggggt 9474897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 32813425 - 32813326
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  32813425 aatgttacatagacaccatttattcccatacacccttgtacacccc-atacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggg 32813327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 37649379 - 37649280
Alignment:
Q  139 agtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcg 238  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  37649379 agtaatgatacatagacaccctttattcccatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagggaaagtgtgcttgtgcg 37649281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 48716200 - 48716303
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |||||||| || ||||||||||||    
T  48716200 gagtaatgatacatagacaccctttattcccatacacccttgtacacccc-atgcattaggaagagagaagaggaaagaaaagataaagtgtgcttgtgc 48716298  T
Q  238 ggggt 242  Q
    |||||    
T  48716299 ggggt 48716303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 2582097 - 2581994
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||||||||| |||| ||||||||||||    
T  2582097 gagtaatgatacataaacaccctttattctaatacacccttgtacacctc-atgtattaggaagagagaagaggagagaaaaaagaaagtgtgcttgtgc 2581999  T
Q  238 ggggt 242  Q
    |||||    
T  2581998 ggggt 2581994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 47452238 - 47452339
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||  ||||||| |||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  47452238 gagtaatgatacatagacactctttattcccatacatccttgtacacccc-atgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 47452336  T
Q  238 ggg 240  Q
    |||    
T  47452337 ggg 47452339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 38632255 - 38632342
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  38632255 acaccctttattcccatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagaaaaagtgtgcttgtgcggggt 38632342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 43314 - 43214
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| | ||| |||||||| |||||| |||||||||||| ||||||||| ||| |||| ||||||||||||||||| ||||||||||||    
T  43314 gagtaatgatacatagataccctttattcttatacactcttgtacacccc-atgcattagaaagagagaggaggagagaaaagagaaagtgtgcttgtgc 43216  T
Q  238 gg 239  Q
    ||    
T  43215 gg 43214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 8346305 - 8346409
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaag-ggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||| | ||||||||||||||| | | ||||||||||||||||||| |||||||||||    
T  8346305 gagtaatgatacataaataccatttattctcatacacctttgtaca-ctccatgcattaggaagagaaaaagaggagagaaaagagaaagtgtgcttgtg 8346403  T
Q  237 cggggt 242  Q
    | ||||    
T  8346404 cagggt 8346409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 49811449 - 49811545
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgg 239  Q
    |||| |||||| ||||| ||||||||||||||||||||| |||| | || |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  49811449 aatgttacatagacaccctttattctcatacacccttgtgcaccac-atacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgg 49811545  T

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Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 45044498 - 45044581
Alignment:
Q  158 catttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||||||||||  |||| |||||||||||    
T  45044498 catttattctcatacacccttgtacacccc-atacattaggaagagagaagagaagagaaaagagaaaatgtgtttgtgcggggt 45044581  T

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Target: chr1; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 3000502 - 3000398
Alignment:
Q  137 cgagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||||||||||||||| ||| |  |||||  |||||||||||||||||||| ||  ||||||||| ||||||| |||||||||||||| ||||||||||     
T  3000502 cgagtaatgatacatagacatccattatttccatacacccttgtacacccc-atatattaggaagagagaagatgagagaaaagagaaagtgtgcttgta 3000404  T
Q  237 cggggt 242  Q
    ||||||    
T  3000403 cggggt 3000398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 38595336 - 38595233
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||| |  |||||  |||||||||||||||||||| ||  ||||||||| ||||||| |||||||||||||| |||||||||| |    
T  38595336 gagtaatgatacatagacatccattatttccatacacccttgtacacccc-atatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtac 38595238  T
Q  238 ggggt 242  Q
    |||||    
T  38595237 ggggt 38595233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 37926372 - 37926457
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    ||||||||||||| |||||| ||||||||||||| || |||||||||| |||||||| ||||||||||||| |||| ||||| ||||    
T  37926372 acaccatttattcacatacatccttgtacacccc-atacattaggaagagagaagagaagagaaaagagaaagtgtacttgtacggg 37926457  T

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Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 51898605 - 51898702
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||| ||||||   ||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| |||| |||||||||||||||    
T  51898605 aatgttacataaacaccctttatttctatacacccttgtacacccc-atgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcggg 51898702  T

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Target: chr1; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 11152312 - 11152399
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||||||| |||| |||||||| ||||| | ||||| ||||||||||||| ||| |||| | |||||||||||||||    
T  11152312 acaccatttattctcatacatccttctacacccc-atgcactgggaagagagaagaggagaggaaaaagaaagcgtgcttgtgcggggt 11152399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 44454161 - 44454064
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacac---ccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||| |||||| |||||||||||||| |||||||||| ||| |   ||||||||||||||||| ||||||| ||||| ||||| || |||||||||||    
T  44454161 aatgttacataaacaccatttattcttatacacccttatactctgaccccatgcattaggaagagagaagatgagaggaaagaaaaagtgtgcttgtg 44454064  T

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Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 44548343 - 44548397
Alignment:
Q  188 catgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  44548343 catgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggggt 44548397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 5958948 - 5959021
Alignment:
Q  168 catacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| ||||||||||||    
T  5958948 catacacccttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggt 5959021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 50590948 - 50591021
Alignment:
Q  168 catacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| ||||||||||||    
T  50590948 catacacccttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggt 50591021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 26274611 - 26274516
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| ||||||||||||| ||  | |||||||||||||| |||||   ||||||||||| || |||| |||||||    
T  26274611 gagtaatgatacatagacaccctttattcccatacacccttgtgca-tctcatgcattaggaagagagaa---gagagaaaagaaaaagtgtacttgtgc 26274516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 41608415 - 41608514
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||| ||| ||| ||||||||| |||||||| |||  |||||||| |||| ||||| |||||    
T  41608415 aatgttacataaacaccttttaattgcatacacccttgtaca-ccctatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtacgggg 41608513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 13414895 - 13414840
Alignment:
Q  187 ccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    ||||||||||||||| ||||||| || |||||||||||  |||||||||| |||||    
T  13414895 ccatgcattaggaagagagaagatgatagaaaagagaaaatgtgcttgtgtggggt 13414840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 47748620 - 47748523
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||| |||| |  ||||||| |||||||| ||||||| ||||||||| |||||||| |||  |||||||| || | ||||||||||    
T  47748620 aatgttacatagacaccttttaattgcatacactcttgtaca-ccccatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcggg 47748523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 6261048 - 6261004
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacaccc 186  Q
    |||| |||||| |||||||||||| ||||||||| ||||||||||    
T  6261048 aatgttacatacacaccatttattttcatacacctttgtacaccc 6261004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 12831229 - 12831126
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  12831229 gagtaatgatacatagacaccatttattctcatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 12831131  T
Q  238 ggggt 242  Q
    |||||    
T  12831130 ggggt 12831126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 504039 - 504142
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  504039 gagtaatgatacatagacaccctttattctcatacacccttgtacacccc-atgcattaggaagagagaagatgagagaaaagagaatgtgtgcttgtgc 504137  T
Q  238 ggggt 242  Q
    |||||    
T  504138 ggggt 504142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 34012214 - 34012315
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  34012214 gagtaatgatacatagacaccctttattctcgtacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 34012312  T
Q  238 ggg 240  Q
    |||    
T  34012313 ggg 34012315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 23122514 - 23122618
Alignment:
Q  137 cgagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||| ||    
T  23122514 cgagtaatgatacatagacaccctttattctcatacacccttgtaca-ccccatgcattaggaagagagaacaggagagaaaagagaaagtgtgcttatg 23122612  T
Q  237 cggggt 242  Q
    ||||||    
T  23122613 cggggt 23122618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 14548104 - 14548001
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  14548104 gagtaatgatacatagacaccctttattcccatacatccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 14548006  T
Q  238 ggggt 242  Q
    |||||    
T  14548005 ggggt 14548001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 40423865 - 40423964
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  40423865 aatgatacatagacaccttttattcccatacacccttgtacacctc-atgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggg 40423963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 9122367 - 9122266
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| |||   ||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  9122367 gagtaatgatacatagacattctttattcccatacactcttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 9122269  T
Q  238 ggg 240  Q
    |||    
T  9122268 ggg 9122266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 15197517 - 15197412
Alignment:
Q  136 acgagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgt 235  Q
    ||||||||||||||||| ||||  ||||||| |||||||||||||||||| | ||||||| ||||| || ||||||||||||||||||| ||||||||||    
T  15197517 acgagtaatgatacatagacactttttattcccatacacccttgtacacctc-atgcatttggaagagaaaagaggagagaaaagagaaagtgtgcttgt 15197419  T
Q  236 gcggggt 242  Q
    |||||||    
T  15197418 gcggggt 15197412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 8841354 - 8841453
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  8841354 aatgttacatagacaccatttattctcatacactcttgtacacccc-atgcactaggaaaagagaagaggagaggaaagagaaagtgtgcttgtgcgggg 8841452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 44507006 - 44507108
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| || ||||||| |    
T  44507006 gagtaatgatacatagacat-atttattctcatacacccttgtacacccc-atgcattaggaagagagaagatgagagaaaagagaaagtatgcttgtac 44507103  T
Q  238 ggggt 242  Q
    |||||    
T  44507104 ggggt 44507108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 43414503 - 43414600
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||| ||||||  |||||||||||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  43414503 aatgttacatagacaccctttattgccatacacccttgtacacccc-atacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 43414600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 1179858 - 1179958
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||| ||| ||| | ||||||| |||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  1179858 gagtaatgatagatagacatcctttattcccatatatccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 1179956  T
Q  238 gg 239  Q
    ||    
T  1179957 gg 1179958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 5958008 - 5957911
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||| |||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||| |||||||| ||||| |||||||||    
T  5958008 aatgttacataaacaccctttattctcatacacccttgtacacctc-atgcactaggaagagagaagaggagaggaaagagaaagtgtgattgtgcggg 5957911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 42710212 - 42710297
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaa 224  Q
    ||||||||||||| | ||||| ||||||| |||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||    
T  42710212 gagtaatgatacacagacaccctttattcccatacacccttgtaca-ccccatacattaggaagagagaagaggagagaaaagagaa 42710297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 4854785 - 4854884
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||  |||||||||||| ||||||||||| ||| || |||||| ||| |||||||||||||||||||||| |||||||||||| |||    
T  4854785 aatgttacatagacactctttattctcatatacccttgtacatccc-atacattagtaagagagaagaggagagaaaagagaaagtgtgcttgtgcaggg 4854883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 10284553 - 10284652
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||||||| ||||| ||||||||||||| ||||| ||||||| ||||||| || || |||||||| ||||||||||||||||    
T  10284553 aatgttacatagacaccttttattcttatacaaccttgtacacccc-atgcactaggaagagagaagatgaaaggaaagagaaagtgtgcttgtgcgggg 10284651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 42354510 - 42354600
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgctt 233  Q
    |||| |||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||| |||  |||||||| ||||||||    
T  42354510 aatgttacatagacaccatttattctcatacacccttctaca-ccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgctt 42354600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 37038657 - 37038560
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||| ||||||   ||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| |||| |||||||||||||||    
T  37038657 aatgttacataaacaccctttatttctatacacccttgtacacccc-atgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcggg 37038560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 15048115 - 15048203
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaa-gagaatgtgtgcttgtgcggggt 242  Q
    ||||| |||||||  ||||||||||||||| ||| || |||||||||| |||||||||||| |||| ||||| |||||||||||||||||    
T  15048115 acaccctttattccgatacacccttgtacatccc-atacattaggaagagagaagaggagataaaaagagaaagtgtgcttgtgcggggt 15048203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 24307714 - 24307814
Alignment:
Q  141 taatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    ||||| |||||| ||||| |||| |  |||||||||||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| ||||||||||    
T  24307714 taatgttacatagacaccttttaattgcatacacccttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 24307812  T
Q  241 gt 242  Q
    ||    
T  24307813 gt 24307814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 16056323 - 16056422
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  16056323 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 16056421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 10621059 - 10621106
Alignment:
Q  193 attaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  10621059 attaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 10621106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 34307394 - 34307295
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||  ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  34307394 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 34307296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 32707925 - 32708026
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaa--tgtgtgcttgtgcgg 239  Q
    |||| |||||| ||||| |||| |  |||||||||||||||| ||||||| ||||||||| |||||||| |||  ||||||||  ||||| |||||||||    
T  32707925 aatgttacatagacaccttttaattgcatacacccttgtaca-ccccatgtattaggaagagagaagagaagaagaaagagaaagtgtgtacttgtgcgg 32708023  T
Q  240 ggt 242  Q
    |||    
T  32708024 ggt 32708026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 30479395 - 30479491
Alignment:
Q  141 taatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcg 238  Q
    ||||| |||||| ||||| |||| |  |||||||||||||||| || |||| ||||||||| |||||||| |||  |||||||| |||| ||||||||    
T  30479395 taatgttacatagacaccttttaattgcatacacccttgtaca-cctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 30479491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 16383521 - 16383456
Alignment:
Q  176 cttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| ||||||||||||    
T  16383521 cttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggt 16383456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 22880576 - 22880679
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  22880576 gagtaatgatacatatacaccatttattcccatacacccttgtaca-ccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 22880674  T
Q  238 ggggt 242  Q
    |||||    
T  22880675 ggggt 22880679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 11427800 - 11427699
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11427800 gagtaatgatacatagacaccctttattctcatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 11427702  T
Q  238 ggg 240  Q
    |||    
T  11427701 ggg 11427699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 17598736 - 17598633
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||  |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  17598736 gagtaatgatacatagacaccttttatttccatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 17598638  T
Q  238 ggggt 242  Q
    |||||    
T  17598637 ggggt 17598633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 31976426 - 31976327
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  31976426 aatgttacatagacaccatttattctcatacacccttgtacacccc-atacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggg 31976328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 32869860 - 32869757
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  32869860 gagtaatgatacatagacaccctttattcccatacatccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 32869762  T
Q  238 ggggt 242  Q
    |||||    
T  32869761 ggggt 32869757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 29858009 - 29857908
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||| |||    
T  29858009 gagtaatgatacatagacaccatttattcccatacacccttgtaca-ccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgc 29857911  T
Q  238 ggg 240  Q
    |||    
T  29857910 ggg 29857908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 6209384 - 6209486
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| | ||| ||||||| | |||| | ||||||| ||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  6209384 gagtaatgatacatagataccctttattccc-tacatctttgtacatccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgctagtgc 6209481  T
Q  238 ggggt 242  Q
    |||||    
T  6209482 ggggt 6209486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 23128044 - 23128142
Alignment:
Q  138 gagtaatgatacatataca-ccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    ||||||||||||||| | | || ||||||  |||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||| |||||||||||    
T  23128044 gagtaatgatacatagagaaccttttatttccatacacccttgtacatccc-atgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtg 23128142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 28536426 - 28536509
Alignment:
Q  158 catttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||| | |||||| ||| ||||||||| ||||||||||| |||||    
T  28536426 catttattttcatacacccttgtacacccc-atgcagtaggaagagggaagagaagataaaagagaaagtgtgcttgtgtggggt 28536509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 31110683 - 31110782
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||| | ||||||  |||||||| ||||||||||| || |||||||||| |||||||| ||||||||||||| |||||||||||| |||    
T  31110683 aatgttacatagacatcctttatttccatacacctttgtacacccc-atacattaggaagagagaagagtagagaaaagagaaagtgtgcttgtgcaggg 31110781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 15832756 - 15832674
Alignment:
Q  141 taatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaa 224  Q
    ||||||||| || ||||| |||||||  ||||||||||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  15832756 taatgatacgtagacaccctttattccaatacacccttgtacacccc-atgcattaggaagatagaagaggagaaaaaagagaa 15832674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 31952952 - 31953045
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||| |||||| |||||||||||||||||||| |||| |||| ||||||||| ||||||| |||||||| |||  |||||||| ||||| |||||    
T  31952952 aatgttacatagacaccatttattctcatacatccttctaca-ccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgtttgtg 31953045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 946557 - 946465
Alignment:
Q  139 agtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgct 232  Q
    |||||||||||||  ||||  |||||| |||||||  |||||||| | | ||||||||||||| |||||||||||||||||||||| |||||||    
T  946557 agtaatgatacattgacactttttattgtcatacattcttgtacatctc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgct 946465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 4231726 - 4231627
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  4231726 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 4231628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 31109351 - 31109421
Alignment:
Q  171 acacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    ||||||||||| ||||| ||||||||||||| || ||||||||||||||||||| |||| ||| ||||||||    
T  31109351 acacccttgtatacccc-atgcattaggaagagaaaagaggagagaaaagagaaagtgtacttttgcggggt 31109421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 15989964 - 15990063
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||  ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  15989964 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 15990062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 30341282 - 30341381
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||  ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  30341282 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 30341380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 22422001 - 22422043
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacac 184  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  22422001 aatgttacatagacaccatttattctcatacacccttgtacac 22422043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 15507946 - 15508045
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||| ||||||||||||| ||  ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  15507946 aatgttacatagacaccttttaattgcatacatccttgtacacccc-atatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 15508044  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 30870180 - 30870093
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    ||||| |||||| ||||||||| ||||||||||  ||  | ||| ||| ||||||||||||| ||||||||  ||||||||||||||||    
T  30870180 acaccctttattttcatacacctttgtacaccct-atatactagaaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggt 30870093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 6034226 - 6034125
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  6034226 gagtaatgatacatagacaccttttattctcatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 6034128  T
Q  238 ggg 240  Q
    |||    
T  6034127 ggg 6034125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 41236529 - 41236426
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  41236529 gagtaatgatacatagacaccctttattcccatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 41236431  T
Q  238 ggggt 242  Q
    |||||    
T  41236430 ggggt 41236426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 48182967 - 48183070
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  48182967 gagtaatgatacatagacaccctttattctcatacacccttgtacacccc-atgcattaagaagagagaagaggagagaaaagagaaagtgtgcttgtgc 48183065  T
Q  238 ggggt 242  Q
    |||||    
T  48183066 ggggt 48183070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 42044285 - 42044388
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||  |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  42044285 gagtaatgatacatagacaccctttatttccatacacccttgtacatccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 42044383  T
Q  238 ggggt 242  Q
    |||||    
T  42044384 ggggt 42044388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 24995025 - 24995128
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||  |||||||||||    
T  24995025 gagtaatgatacatagacaccctttattcccatacaccattgtacacccc-atgcattaagaagagagaagaggagagaaaagagaaaatgtgcttgtgc 24995123  T
Q  238 ggggt 242  Q
    |||||    
T  24995124 ggggt 24995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 41824060 - 41823961
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| |||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||    
T  41824060 aatgttacatagacaccatttattctcatacacctttgtacacctc-atgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcgggg 41823962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 54473453 - 54473554
Alignment:
Q  140 gtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgg 239  Q
    ||||||||||||  ||||| ||||||| ||||||||||||||||| || ||| ||||||||| ||||||||||||||||||| || ||||||||||||||    
T  54473453 gtaatgatacatgaacaccctttattcccatacacccttgtacactcc-atgtattaggaagagagaagaggagagaaaagataaagtgtgcttgtgcgg 54473551  T
Q  240 ggt 242  Q
    |||    
T  54473552 ggt 54473554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 11511381 - 11511483
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| |||| |||||||  |||||||||||||||||| | |||||||| |||| |||||||| ||||||||||||| ||||||||||||    
T  11511381 gagtaatgatacatagacac-atttatttccatacacccttgtacacctc-atgcattaagaagagagaagagaagagaaaagagaaagtgtgcttgtgc 11511478  T
Q  238 ggggt 242  Q
    |||||    
T  11511479 ggggt 11511483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 31910370 - 31910271
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||||||||||| ||||||| |||||||| ||| || |||||||||| ||||||| |||||||||||||| ||||||||||||||||    
T  31910370 aatgttacatagacaccatttattcccatacactcttgtacatccc-atacattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgcgggg 31910272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 40574945 - 40574860
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    ||||| |||||||||||||||||||||||||||| ||  ||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  40574945 acaccttttattctcatacacccttgtacacccc-atatattaggaagagagaagaggagagaaaagagaaagtgtgcttgttcggg 40574860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 29240064 - 29239965
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||| ||||||| |||||||||||| ||||| ||||||| ||||||||||||| |||||||| ||||||||||| ||||    
T  29240064 aatgttacatagacaccctttattcccatacactcttgtacacccc-atgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgtgggg 29239966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 480395 - 480468
Alignment:
Q  168 catacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  480395 catacacctttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacggggt 480468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 23608417 - 23608320
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    ||||||||||||||| ||| | ||||||| |||||| || |||||||| | ||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  23608417 gagtaatgatacatagacatcctttattcccatacatccctgtacacctc-atgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtg 23608320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 29234173 - 29234266
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| |||| ||||||||||||||||||           |||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  29234173 gagtaatgatacatagacactatttattctcatacaccc-----------catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 29234261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 50052350 - 50052449
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||| |||||||| |||||||||   ||||| ||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  50052350 aatgttacatagacaccctttattcccatacacctttgtacacctt-atgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcgggg 50052448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 53352492 - 53352587
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||         ||||||| |||||||||||||||||||||| || |||||||||    
T  53352492 gagtaatgatacatagacaccctttattttcatacacccttgtacacc---------taggaagagagaagaggagagaaaagagaaagtatgcttgtgc 53352582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 50526093 - 50526189
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgg 239  Q
    |||| |||||| ||||| ||||||   ||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| |||| | ||||||||||||    
T  50526093 aatgttacataaacaccctttatttctatacacccttgtacacccc-atgcactaggaagagagaagaggagaggaaatagaaagcgtgcttgtgcgg 50526189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 19670638 - 19670737
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  19670638 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 19670736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 17983691 - 17983764
Alignment:
Q  168 catacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||||| | ||| ||||||||| |||||||| |||  |||||||| |||| ||||||||||||    
T  17983691 catacacccttgtacacctc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggt 17983764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 50813814 - 50813913
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||| | | ||| ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  50813814 aatgttacatagacaccttttaattgcatacacccttgtacatctc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 50813912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 55475369 - 55475270
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||| ||||||| ||||||||| |||||||| |||  |||||||| |||| ||| ||| |||    
T  55475369 aatgttacatagacaccttttaattgcatacacccttgtaca-ccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttatgcaggg 55475271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 29547881 - 29547978
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||| |||| |  |||||||||||||||| ||||||| ||||||||| |||||||| |||  ||||| || |||| ||| ||||||    
T  29547881 aatgttacatagacaccttttaattgcatacacccttgtaca-ccccatgtattaggaagagagaagagaagaagaaagaaaaagtgtacttatgcggg 29547978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 47986360 - 47986287
Alignment:
Q  168 catacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||| ||| ||| ||||||||| |||||||| | |  |||||||| |||| ||||||||||||    
T  47986360 catacacccttgtacatccc-atgtattaggaagagagaagagaataagaaagagaaagtgtacttgtgcggggt 47986287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 48647694 - 48647744
Alignment:
Q  189 atgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgg 239  Q
    ||||| ||||||| ||||||||||||| ||||||||  |||||||||||||    
T  48647694 atgcactaggaagagagaagaggagaggaaagagaaattgtgcttgtgcgg 48647744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 18924417 - 18924513
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgg 239  Q
    |||| |||||| ||||| |||| |  ||||||||||| |||| || |||| ||||||||| |||||||| |||  |||||||| |||| |||||||||    
T  18924417 aatgttacatagacaccttttaattgcatacacccttttaca-cctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgg 18924513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 56300105 - 56300181
Alignment:
Q  160 tttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||  |||||||| | | || |||||| ||| ||||||||||||| |||||||| ||||| ||||||    
T  56300105 tttattctcatacaatcttgtacatctc-atacattagaaagagagaagaggagaggaaagagaaagtgtgtttgtgc 56300181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 19330024 - 19329921
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  19330024 gagtaatgatacatagacaccctttattcccatacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 19329926  T
Q  238 ggggt 242  Q
    |||||    
T  19329925 ggggt 19329921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 4999432 - 4999535
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||    
T  4999432 gagtaatgatacatagacaccttttattctcatacacccttgtaca-ccccatgcattaggaagagagaagaggagataaaagagaaagtgtgtttgtgc 4999530  T
Q  238 ggggt 242  Q
    |||||    
T  4999531 ggggt 4999535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 8080301 - 8080404
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  8080301 gagtaatgatacatagacaccctttattcccatacacccttgtacacccc-atgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 8080399  T
Q  238 ggggt 242  Q
    |||||    
T  8080400 ggggt 8080404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 32951411 - 32951514
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  32951411 gagtaatgatacatagacaccccttattctcatacacccttgtacacccc-atgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 32951509  T
Q  238 ggggt 242  Q
    |||||    
T  32951510 ggggt 32951514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 38837399 - 38837296
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||  |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  38837399 gagtaatgatacatagacaccctttatttccatacacccttgtacatccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 38837301  T
Q  238 ggggt 242  Q
    |||||    
T  38837300 ggggt 38837296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 35137715 - 35137612
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    |||||||||| |||| | ||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  35137715 gagtaatgatccatagataccatttgttctcatacacccttgtacatccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgc 35137617  T
Q  238 ggggt 242  Q
    |||||    
T  35137616 ggggt 35137612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 35523054 - 35522957
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||| || |||||||||| ||||||| |||||||||||||| |||||||||||||||    
T  35523054 aatgttacataaacaccatttattcccatacacccttgtacacccc-atacattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggg 35522957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 40957889 - 40957788
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| |||||  ||||| ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |||||||||| |    
T  40957889 gagtaatgatacatagacacccattattttcatacacccttgtacacccc-atgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtac 40957791  T
Q  238 ggg 240  Q
    |||    
T  40957790 ggg 40957788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 19436114 - 19436206
Alignment:
Q  147 tacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||| |||||||| ||||||    
T  19436114 tacatagacaccatttattctcatacacccttgtaca-ccccatgcattaggaagagaaaagagaagagaaaagagaaagtgtgcttatgcggg 19436206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 46033723 - 46033819
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgg 239  Q
    |||| |||||| |||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||  | |||||||||||    
T  46033723 aatgttacatagacaccatttattctcatacacccttgtaca-ccccatacattaggaatagagaagaggagagaaaagagaaaatatgcttgtgcgg 46033819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 31736037 - 31735958
Alignment:
Q  160 tttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    ||||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31736037 tttattcccatacacccttgtacacccc-atacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 31735958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 38267222 - 38267119
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| | | ||||||||  |||||||| | ||||| ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  38267222 gagtaatgatacatagatatcatttatttccatacaccttcgtacatccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 38267124  T
Q  238 ggggt 242  Q
    |||||    
T  38267123 ggggt 38267119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 3784155 - 3784076
Alignment:
Q  160 tttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    ||||||| ||||||  |||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  3784155 tttattcacatacattcttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 3784076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 7389570 - 7389468
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||| | ||||||| |||||||||| ||||||||| ||| ||||||||| ||||  |||||||||||||||| ||||||||||||    
T  7389570 gagtaatgatacatagacatcctttattcccatacaccct-gtacacccc-atgtattaggaagagagagtaggagagaaaagagaaagtgtgcttgtgc 7389473  T
Q  238 ggggt 242  Q
    |||||    
T  7389472 ggggt 7389468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 11044360 - 11044257
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||  |||||| ||||||||| ||||||||| | ||||||||||||| ||||||| ||||| |||||||| |||| |||||||    
T  11044360 gagtaatgatacatagacactctttattttcatacacctttgtacacctc-atgcattaggaagagagaagatgagaggaaagagaaagtgtacttgtgc 11044262  T
Q  238 ggggt 242  Q
    |||||    
T  11044261 ggggt 11044257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 3694519 - 3694448
Alignment:
Q  168 catacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    ||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  3694519 catacactcttgtacacccc-atgcattgggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 3694448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 21234579 - 21234480
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||||||||||||||| ||||||| |||||| |||||||||| ||| | |||||||  |||||||  |||||||||||||||    
T  21234579 aatgttacatagacaccttttattctcatacaccattgtaca-ccccatacattaggaagagaggaaaggagaggtaagagaaaatgtgcttgtgcgggg 21234481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 16374746 - 16374839
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||| |||||| ||||| |||||||||||||||| ||||||| | |||| |||||||||| ||||| | ||||  ||||||||||||||||||||    
T  16374746 aatgttacatagacaccctttattctcatacacctttgtaca-ctccatacattaggaagagagaaaaagagatgaaagagaatgtgtgcttgtg 16374839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 41423860 - 41423779
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaa 224  Q
    |||| |||||| ||||| |||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||  ||||||||    
T  41423860 aatgttacataaacaccctttattctcatacacctttgtaca-ccccatgcactaggaagagagaagaggagatgaaagagaa 41423779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 3434734 - 3434666
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaa 207  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||||| ||||||||||||||||| |||||    
T  3434734 gagtaatgatacatagacaccctttattcccatacagccttgtaca-ccccatgcattaggaagagagaa 3434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 26296810 - 26296723
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    ||||||| ||||  |||||||||||||||||| | || ||||| |||| ||||||||||||||||||||||  || |||||||||||||    
T  26296810 acaccatatatttccatacacccttgtacacctc-atacattaagaagagagaagaggagagaaaagagaaaatgcgcttgtgcggggt 26296723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 36362196 - 36362125
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagag 210  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||  |||||| ||||||||| || |||||    
T  36362196 gagtaatgatacatagacaccctttattctcatacacccttgtaca-tcccatgtattaggaagagaaaagag 36362125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 8238365 - 8238292
Alignment:
Q  168 catacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| ||||||||||||    
T  8238365 catacacccttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggt 8238292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 36361843 - 36361888
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtaca 183  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  36361843 gagtaatgatacatagacaccctttattctcatacacccttgtaca 36361888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 22343539 - 22343440
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||| | ||| ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  22343539 aatgttacatagacaccttttaattgcatacacccttgtacacctc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 22343441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 35468777 - 35468876
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||||||||| |||||||||||||| |||| ||||  | |||| | ||||||| |||||||||| || |||||||| ||||| |||||| |||    
T  35468777 aatgttacatatacaccttttattctcatacatccttataca-tctcatgaactaggaagagagaagaggataggaaagagaaagtgtgtttgtgcaggg 35468875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 38044375 - 38044276
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||| ||||||||| || ||||| |||  |||||||| |||| |||||||||||    
T  38044375 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atgtattaggaagagaaaagagaagaagaaagagaaagtgtacttgtgcgggg 38044277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 41915919 - 41915820
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||  ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  41915919 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 41915821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 46374746 - 46374804
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaag 201  Q
    |||| |||||| ||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  46374746 aatgttacatagacaccatttattcccatacacccttgtaca-ccccatacattaggaag 46374804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 18207339 - 18207258
Alignment:
Q  160 tttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||| |||||||||||||||||| |  || || ||||||| ||||||||||||  |||||||| ||||||||||| |||||    
T  18207339 tttattatcatacacccttgtacactct-atccactaggaagagagaagaggagatgaaagagaaagtgtgcttgtgtggggt 18207258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 27744243 - 27744321
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgctt 233  Q
    ||||||||||||| |||| | ||||||||| ||| ||||| ||||||| ||||||||||||| | ||||||  |||||||    
T  27744243 acaccatttattcccatatatccttgtacatccc-atgcactaggaagagagaagaggagaggatagagaaaatgtgctt 27744321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 32564374 - 32564447
Alignment:
Q  168 catacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||||| | ||| ||||||||| |||||||| |||  |||||||| ||||  |||||||||||    
T  32564374 catacacccttgtacacctc-atgtattaggaagagagaagagaagaagaaagagaaagtgtatttgtgcggggt 32564447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 36208306 - 36208252
Alignment:
Q  188 catgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||| ||||||| ||||||||||||| ||||||||  ||||||||||| ||||    
T  36208306 catgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcagggt 36208252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 7728084 - 7727985
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||| ||||||||||||| ||  ||||||||| |||||||| |||  ||| |||| |||| |||||||||||    
T  7728084 aatgttacatagacaccttttaattgcatacatccttgtacacccc-atatattaggaagagagaagagaagaagaaacagaaagtgtacttgtgcgggg 7727986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 10249300 - 10249403
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  10249300 gagtaatgatacatagacaccctttattctcatacacccttgtacacccc-atgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgc 10249398  T
Q  238 ggggt 242  Q
    |||||    
T  10249399 ggggt 10249403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 13438525 - 13438422
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  13438525 gagtaatgatacatagacaccctttattcccatacatccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 13438427  T
Q  238 ggggt 242  Q
    |||||    
T  13438426 ggggt 13438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 17473202 - 17473101
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  17473202 gagtaatgatacatagacaccctttattcccatacacccttgtacacctc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 17473104  T
Q  238 ggg 240  Q
    |||    
T  17473103 ggg 17473101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 28863647 - 28863534
Alignment:
Q  128 atattttgacgagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgt 227  Q
    ||||||| | ||||||||||||||| ||||| ||||||| |||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||| ||    
T  28863647 atatttttatgagtaatgatacatagacaccctttattcccatacacccttgtacacctc-atgcattaggaagagagaagaggagataaaagagaaagt 28863549  T
Q  228 gtgcttgtgcggggt 242  Q
    |||||||||||||||    
T  28863548 gtgcttgtgcggggt 28863534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 19930738 - 19930841
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  19930738 gagtaatgatacatagacaccttttattcccatacacccttgtacacctc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgc 19930836  T
Q  238 ggggt 242  Q
    |||||    
T  19930837 ggggt 19930841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 32505566 - 32505669
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| |||| ||||||||||||    
T  32505566 gagtaatgatacatagacactctttattctcatacacccttgtacacccc-atgcattaagaagagagaagaggagagaaaatagaaagtgtgcttgtgc 32505664  T
Q  238 ggggt 242  Q
    |||||    
T  32505665 ggggt 32505669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 9058663 - 9058559
Alignment:
Q  137 cgagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||||||||||| ||| | ||| ||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  9058663 cgagtaatgatatataaataccctttattcccatacactcttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtg 9058565  T
Q  237 cggggt 242  Q
    ||||||    
T  9058564 cggggt 9058559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 33436020 - 33436121
Alignment:
Q  140 gtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgg 239  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||| |||||||| ||||||||||||||    
T  33436020 gtaatgatgcatagacaccttttattctcatacacccttgtacacctc-atgcattaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcgg 33436118  T
Q  240 ggt 242  Q
    |||    
T  33436119 ggt 33436121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 7465653 - 7465756
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||| || |||||||||||||| ||||||| |||| ||||||||| |||||||||||     
T  7465653 gagtaatgatacatagacaccctttattcccatacacccttgtaca-cctcatgcattaggaagagagaagaagagataaaagagaaagtgtgcttgtgt 7465751  T
Q  238 ggggt 242  Q
    |||||    
T  7465752 ggggt 7465756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 40701660 - 40701557
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||  |||||||||||||||||||  ||||||||||||| ||||||| |||||||||||||| ||||| ||||||    
T  40701660 gagtaatgatacatagacaccttttatttccatacacccttgtacacccg-atgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgc 40701562  T
Q  238 ggggt 242  Q
    |||||    
T  40701561 ggggt 40701557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 38882729 - 38882831
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||| ||||||||||||||||| || ||||  ||||||||||||| ||| ||||||||    
T  38882729 gagtaatgatacatagagaccatttattcccatacacccttgtaca-ccccatgcattaggaagagataagataagagaaaagagaaagtgcgcttgtgc 38882827  T
Q  238 gggg 241  Q
    ||||    
T  38882828 gggg 38882831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 28381573 - 28381673
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||  ||||||||| ||||||| |||||||||||||| ||||||||||||    
T  28381573 gagtaatgatacatagacaccctttattcccatacatccttgtacacccc-atatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgc 28381671  T
Q  238 gg 239  Q
    ||    
T  28381672 gg 28381673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 20700993 - 20700894
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||| |||||||| |||||||    
T  20700993 aatgttacatagacaccctttattcccatacacccttgtacacccc-atgcactaggaagagagaagaggagaggaaagagaaagtgtgcttatgcgggg 20700895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 36169014 - 36168915
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||||||||||| |||||||||||| || |||||||||| ||||| |||||||||||||||| || |||||||||||||    
T  36169014 aatgttacataaacaccctttattctcatacactcttgtacacccc-atacattaggaagagagaataggagagaaaagagaaagtatgcttgtgcgggg 36168916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 4060867 - 4060766
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||| | ||||||  |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||| |||||||| |||    
T  4060867 gagtaatgatacataaacatcttttatttccatacacccttgtacacccc-atgcattaggaagagagaagatgagagaaaaaagaaagtgtgcttatgc 4060769  T
Q  238 ggg 240  Q
    |||    
T  4060768 ggg 4060766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 30915646 - 30915542
Alignment:
Q  137 cgagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||||||||||||||| ||| |  |||||  |||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||||| ||||||||||     
T  30915646 cgagtaatgatacatagacatccattatttccatacacccttgtacacccc-atgtattaggaagagagaagatgagagaaaagagaaagtgtgcttgta 30915548  T
Q  237 cggggt 242  Q
    ||||||    
T  30915547 cggggt 30915542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 2533293 - 2533202
Alignment:
Q  150 atatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    ||||||||| ||||||| |||||||||||||||||||| || |||| ||||| |||||||||||| |||||| || |||||||||||||||||    
T  2533293 atatacaccctttattcccatacacccttgtacacccc-atacattgggaagagagaagaggagataaaagaaaaagtgtgcttgtgcggggt 2533202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 40613824 - 40613923
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||| |||||||||||||||||||| || ||||| ||||  |||| |||||||||||||||| ||||||||||||||||    
T  40613824 aatgttacatagacaccctttattcccatacacccttgtacacccc-atacattatgaagaaagaataggagagaaaagagaaagtgtgcttgtgcgggg 40613922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 38273070 - 38273163
Alignment:
Q  147 tacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||| |||||||||||||||||||| | ||||||||||| || |||||||||| ||||| |||||||||||||||| ||||||| |||||||||    
T  38273070 tacataaacaccatttattctcatacatc-ttgtacacccc-atacattaggaagagagaataggagagaaaagagaaagtgtgctagtgcggggt 38273163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 42257366 - 42257272
Alignment:
Q  147 tacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||| ||||| ||||||   |||||| |||||||||||| || ||||||||||  ||||||||||||||||||||| |||||||||||||||||    
T  42257366 tacatagacaccctttatttctatacactcttgtacacccc-atacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgtgcggggt 42257272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 44152105 - 44152012
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||| |||||| ||||| ||||||| |||||||||||||| | | | ||||||||||||| ||||||||||||  |||||||| |||||||||||    
T  44152105 aatgttacataaacaccttttattcgcatacacccttgtatatctc-atgcattaggaagagagaagaggagatgaaagagaaagtgtgcttgtg 44152012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 5574418 - 5574489
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagag 210  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||| | ||||||||||||||| || |||||    
T  5574418 gagtaatgatacatagacaccctttattcccatacacccttgtaca-cgccatgcattaggaagagaaaagag 5574489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 41758765 - 41758684
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaa 224  Q
    |||| |||||| ||||  |||||||||||||| ||||||||| ||||||  ||||||||| |||||||||||| |||||||||    
T  41758765 aatgttacatagacacattttattctcatacatccttgtaca-ccccatatattaggaagagagaagaggagataaaagagaa 41758684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 13365531 - 13365432
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  ||| |||||||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  13365531 aatgttacatagacaccttttaattgcattcacccttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 13365433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 27864873 - 27864811
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaag 201  Q
    ||||||||||||||  ||||| ||||||||||||||||||||||||  |||||| |||||||||    
T  27864873 gagtaatgatacattgacaccctttattctcatacacccttgtaca-tcccatgtattaggaag 27864811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 2997435 - 2997508
Alignment:
Q  168 catacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||||| | ||| ||||||||| |||||||| |||  |||||||| |||| ||||||||||||    
T  2997435 catacacccttgtacacctc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggt 2997508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 43490299 - 43490200
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||  ||| ||||||||| |||||||| |||  ||||| || |||| |||||||||||    
T  43490299 aatgttacatagacaccttttaattgcatacacccttgtacaccct-atgtattaggaagagagaagagaagaagaaagataaagtgtacttgtgcgggg 43490201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 44728705 - 44728659
Alignment:
Q  54 ttttcatacactcattctacaccatattttctctctatctatctctt 100  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||||||    
T  44728705 ttttcatacactcattcaacaccttattttcgctctatctctctctt 44728659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 17823966 - 17823874
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgt 235  Q
    |||| |||||| ||| | ||||||  |||||||||||||||| ||||||  ||| ||||| ||||||| ||||  |||||||| ||||||||||    
T  17823966 aatgttacatagacatcctttatttacatacacccttgtaca-ccccatatatttggaagagagaagatgagatgaaagagaaagtgtgcttgt 17823874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 38732532 - 38732433
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||| ||||||||| | | ||| ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  38732532 aatgttacatagacaccttttaattgcatacatccttgtacatctc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 38732434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 41575271 - 41575223
Alignment:
Q  188 catgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||||||||||| | ||||||||||||  |||||||| |||||||||||    
T  41575271 catgcattaggacgagagaagaggagatgaaagagaaagtgtgcttgtg 41575223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 33149556 - 33149657
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  33149556 gagtaatgatacatagacaccctttattctcgtacacccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 33149654  T
Q  238 ggg 240  Q
    |||    
T  33149655 ggg 33149657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 18520802 - 18520905
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||| ||||||||||||    
T  18520802 gagtaatgatacatagacaccctttattttcatacacccttgtacacctc-atgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgc 18520900  T
Q  238 ggggt 242  Q
    |||||    
T  18520901 ggggt 18520905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 40145589 - 40145486
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||||| |  |||||||||||| |||||||||||||||||||||| ||||||||||||    
T  40145589 gagtaatgatacatagacaccctttattctcatatacccttgtacacctcg-tgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 40145491  T
Q  238 ggggt 242  Q
    |||||    
T  40145490 ggggt 40145486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 2740456 - 2740355
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  2740456 gagtaatgatacatagacaccctttattcccatacacccttgtacatccc-atgcattaggaagagagaaggggagagaaaagagaaagtgtgcttgtgc 2740358  T
Q  238 ggg 240  Q
    |||    
T  2740357 ggg 2740355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 14831998 - 14831895
Alignment:
Q  136 acgagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgt 235  Q
    ||||||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||| |||| |||| ||||||||||    
T  14831998 acgagtaatgatacatagacaccctttattcccatacatccttgtacacccc-atgcattaggaagagagaagaggagaaaaaaaagaaagtgtgcttgt 14831900  T
Q  236 gcggg 240  Q
    |||||    
T  14831899 gcggg 14831895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 35785381 - 35785280
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||  |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||| ||||||    
T  35785381 gagtaatgatacatagacaccttttatttccatacacccttgtacacccc-atgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgc 35785283  T
Q  238 ggg 240  Q
    |||    
T  35785282 ggg 35785280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 13811834 - 13811731
Alignment:
Q  137 cgagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||||||| ||||||| ||||||||||||| |||||| ||||||||| ||| ||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  13811834 cgagtaat-atacatagacaccatttattcccatacatccttgtacatccc-atgcattaggaagagagaagaggagagagaagagaaagtgtgcttgtg 13811737  T
Q  237 cggggt 242  Q
    ||||||    
T  13811736 cggggt 13811731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 15409532 - 15409631
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  15409532 aatgttacataaacaccctttattcgcatacacccttgtacacccc-atacattaggaagagagaagaggagagaaaagagagagtgtgcttgtgcgggg 15409630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 36732876 - 36732963
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    ||||| ||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  36732876 acaccctttattcccatacacccttgtacacctc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 36732963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 26720678 - 26720597
Alignment:
Q  158 catttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||||||||||||||||||| ||||||||| || |||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  26720678 catttattctcatacaccctagtacacccc-atacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtgcggg 26720597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 26990427 - 26990346
Alignment:
Q  158 catttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||||||||||||||||||| ||||||||| || |||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  26990427 catttattctcatacaccctagtacacccc-atacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtgcggg 26990346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 6679876 - 6679777
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||| |||||||| ||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||  |||| ||||||||||    
T  6679876 aatgttacatagacatcatttattgtcatacacccttgtacaccct-atacattaggaagagagaagaggagagaaaagagaaaatgtgtttgtgcgggg 6679778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 31009166 - 31009069
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||| |||||||||||||||| ||||||||||| ||||| ||||||| |||||||| |||| ||| |||| |||||||||||||||    
T  31009166 aatgttacatagacaccctttattctcatacacctttgtacacccc-atgcactaggaagagagaagagaagaggaaatagaaagtgtgcttgtgcggg 31009069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 33825258 - 33825339
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||||||||||||||||||| |||| |||||||| ||||| ||||||| |||||||| ||| ||||||||| |||||||||||    
T  33825258 acaccatttattctcatacagccttctacacccc-atgcactaggaagagagaagagaagataaaagagaaagtgtgcttgtg 33825339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 36875538 - 36875631
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||||||||||    | |||||||||||||||| ||| ||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  36875538 aatgttacatagacaccatttatt----tccacccttgtacacccc-atgtattaggaagagagaagaggagaaaaaagagaaagtgtgcttgtgcggg 36875631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 35943814 - 35943907
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||| |||||| ||||  ||||||  |||||||||||||||||||| ||||| ||||||| || |||||||||| |||||||| |||||||||||    
T  35943814 aatgttacatagacacattttatttccatacacccttgtacacccc-atgcactaggaagagaaaagaggagaggaaagagaaagtgtgcttgtg 35943907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 2177524 - 2177449
Alignment:
Q  160 tttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||||||||||||||||||||||| ||  ||||| ||||||| ||||||||||||| ||||||||  ||||||||||    
T  2177524 tttattctcatacacccttgtacatcca-atgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtg 2177449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 28177911 - 28177854
Alignment:
Q  185 ccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||| |||||||||| | |||||||||||||||||||| ||||| |||||||||||    
T  28177911 ccccatacattaggaagagggaagaggagagaaaagagaaagtgtgtttgtgcggggt 28177854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 31132516 - 31132448
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaa 207  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||| || |||||||||| ||| |||||    
T  31132516 gagtaatgatacataaacaccctttattttcatacacccttgtaca-cctcatgcattagaaagagagaa 31132448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 2252090 - 2252189
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||  ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  2252090 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 2252188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 3921187 - 3921286
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||||||||||||||| ||  ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  3921187 aatgttacatagacaccttttaattgcatacacccttgtacacccc-atatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 3921285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 16115250 - 16115296
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacac 184  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  16115250 gagtaatgatacatagacaccctttattctcatacactcttgtacac 16115296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 42414275 - 42414323
Alignment:
Q  194 ttaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||| |||||||||| |||||||| || |||||||||||||||||    
T  42414275 ttaggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggt 42414323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 39557457 - 39557531
Alignment:
Q  160 tttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgt 235  Q
    |||||||||||| | || |||||||| | ||| ||||||||| |||||||||||| ||||||||| ||||| ||||    
T  39557457 tttattctcatagatccatgtacacctc-atgtattaggaagagagaagaggagataaaagagaaagtgtgattgt 39557531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 20073456 - 20073537
Alignment:
Q  160 tttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||| ||||| | | | ||| | ||||||| ||||||||||||| ||| |||| |||||||||||| ||||    
T  20073456 tttattctcatacacctttgtaaatctc-atgaactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcagggt 20073537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 33644382 - 33644279
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  33644382 gagtaatgatacatagacaccctttattcccatacacccttatacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 33644284  T
Q  238 ggggt 242  Q
    |||||    
T  33644283 ggggt 33644279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 53982193 - 53982090
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  53982193 gagtaatgatacatagacaccctttattcccatacaaccttgtacacccc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 53982095  T
Q  238 ggggt 242  Q
    |||||    
T  53982094 ggggt 53982090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 31456871 - 31456768
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||| ||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  31456871 gagtaatgatacataaacaccctttattcccatgcacccttgtacacccc-atgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgc 31456773  T
Q  238 ggggt 242  Q
    |||||    
T  31456772 ggggt 31456768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 20764837 - 20764936
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| |||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||| |||||||||| |||||    
T  20764837 aatgttacatagacaccatttattctcatacacccttgtaca-ccccatacattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacgggg 20764935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 49607603 - 49607499
Alignment:
Q  131 ttttgacgagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtg 230  Q
    |||| ||||||||||||||||| ||||| ||||||| |||||||||||||||| |  |||||||||||||| || ||||||||||||||||||| |||||    
T  49607603 tttttacgagtaatgatacatagacaccctttattcccatacacccttgtaca-cgtcatgcattaggaagagaaaagaggagagaaaagagaaagtgtg 49607505  T
Q  231 cttgtg 236  Q
    ||||||    
T  49607504 cttgtg 49607499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 8076571 - 8076472
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| |||||||||||||||||||||  ||||||||||| ||||| ||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  8076571 aatgttacatagacaccatttattctcatacacttttgtacacccc-atgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcgggg 8076473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 17470587 - 17470484
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||||||||||||||||||   ||||||| ||| ||||||||||||| ||||||| |||||||||||||| |||||||||||     
T  17470587 gagtaatgatacatagacaccatttattctcatacatatttgtacatccc-atgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgt 17470489  T
Q  238 ggggt 242  Q
    |||||    
T  17470488 ggggt 17470484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 54868813 - 54868916
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||| ||||||  |||||||||||||||||||  ||||||||||||| ||||||| |||||||||||||| ||||| ||||||    
T  54868813 gagtaatgatacatagacaccttttatttccatacacccttgtacaccct-atgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgc 54868911  T
Q  238 ggggt 242  Q
    |||||    
T  54868912 ggggt 54868916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 51419282 - 51419381
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||  |||||||||||||||||||| || |||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  51419282 aatgttacataaacaccttttatttccatacacccttgtacacccc-atacattaggaagagagaataggagagaaaagagaaagtgtgcttgtgcgggg 51419380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 52629482 - 52629379
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| |||||  |||||  |||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||| |||||||||| |    
T  52629482 gagtaatgatacatagacacccattatttccatacacccttgtacatccc-atgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtac 52629384  T
Q  238 ggggt 242  Q
    |||||    
T  52629383 ggggt 52629379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 11347844 - 11347943
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||| ||||||||||| |||||||| || |||||||||| |||||||||||||||||||||| |||||||| ||| |||    
T  11347844 aatggtacatagacaccctttattcccatacacccttatacacccc-atacattaggaagagagaagaggagagaaaagagaaagtgtgcttatgcaggg 11347942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 36707347 - 36707438
Alignment:
Q  139 agtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgc 231  Q
    |||||||||||||| ||||| ||||||| ||||||  |||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||    
T  36707347 agtaatgatacatagacaccttttattcccatacattcttgtacacctc-atgcattaggaagagagaagaggagagaaaagagaaagtgtgc 36707438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 30801655 - 30801754
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||||||||||||||||||||||| ||||||| | ||||||| ||||||| ||||| ||||||||  |||||||||| ||||    
T  30801655 aatgttacatagacaccttttattctcatacacccttgtaca-ccccatgtactaggaagagagaagatgagaggaaagagaaaatgtgcttgtgtgggg 30801753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 41189686 - 41189785
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||  ||||||| ||||||||| || || ||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  41189686 aatgttacatagacaccctttatttccatacactcttgtacactcc-atacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgtgcgggg 41189784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 47532043 - 47531944
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| ||||||| ||||||| ||||||||  || || |||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  47532043 aatgttacataaacaccctttattcccatacacacttgtacattcc-atacattaggaagagagaataggagagaaaagagaaagtgtgcttgtgcgggg 47531945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 35536804 - 35536711
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||| |||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||| |||  |||||| | |||||||||||    
T  35536804 aatgttacatagacaccatttattctcatacacccttctaca-ccccatgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtg 35536711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 9563179 - 9563083
Alignment:
Q  140 gtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||| | ||| ||||||| |||||||| ||||||| | | ||||||||||||| ||||||||||||||| |||||| ||||| ||||||    
T  9563179 gtaatgatacatagataccctttattcccatacacctttgtacaactc-atgcattaggaagagagaagaggagagaagagagaaagtgtgtttgtgc 9563083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 11095285 - 11095356
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagag 210  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||| || |||||    
T  11095285 gagtaatgatacatagacaccctttattctcatacacccttgtaca-cccgatgcattaggaagagaaaagag 11095356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 26141452 - 26141553
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaaggga--gaagaggagagaaaagagaatgtgtgcttgtgcgg 239  Q
    |||| |||||| ||||| ||||||  ||||||| |||||||||||| || |||||||||| ||  |||||||||||||||||||| ||||||||||| ||    
T  26141452 aatgttacatagacaccctttatttccatacactcttgtacacccc-atacattaggaagagaaagaagaggagagaaaagagaaagtgtgcttgtgtgg 26141550  T
Q  240 ggt 242  Q
    |||    
T  26141551 ggt 26141553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 35965704 - 35965798
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    |||| |||||| ||||| |||||||||||||||||||||||| || |||| |||| |||  || |||||||||| |||||||| ||||||||||||    
T  35965704 aatgttacatagacaccttttattctcatacacccttgtaca-cctcatgaattaagaaaagaaaagaggagaggaaagagaaagtgtgcttgtgc 35965798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 36331251 - 36331350
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||| ||| ||||||||| |||||||| |||  |||||||| |||| |||||||||||    
T  36331251 aatgttacatatacatcttttaattgcatacacccttgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 36331349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 27714822 - 27714892
Alignment:
Q  139 agtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagag 210  Q
    |||||||||||||||||||  ||||||||| |||||||||||||| ||||||| ||| ||||| ||||||||    
T  27714822 agtaatgatacatatacactctttattctcgtacacccttgtaca-ccccatgtattgggaagagagaagag 27714892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 14623761 - 14623854
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||| |||||| |||||||||||||||||||| |||| |||| || |||||| ||| ||| |||||||| |||  |||||||| |||||||||||    
T  14623761 aatgttacatagacaccatttattctcatacatccttctaca-cctcatgcactagaaagagagaagagaagatgaaagagaaagtgtgcttgtg 14623854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 48587019 - 48587087
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaa 207  Q
    ||||||||||||||| ||||| ||||||| |||| |||||||||||  |||||||||||||||| |||||    
T  48587019 gagtaatgatacatagacaccctttattcccatatacccttgtaca-tcccatgcattaggaagagagaa 48587087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 8956940 - 8956847
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||| |||||| ||| ||||||||||||||||||||| |||| |||  |||| ||||||| |||||||| |||  |||||| | |||||||||||    
T  8956940 aatgttacatagacagcatttattctcatacacccttctaca-ccctgtgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtg 8956847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 45058475 - 45058574
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||| |  |||||||| ||||||||||| ||| ||||||||| |||||||| |||  |||||||| || | |||||||||||    
T  45058475 aatgttacatagacaccttttaattgcatacaccattgtacacccc-atgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcgggg 45058573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 26754821 - 26754774
Alignment:
Q  195 taggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    ||||||| ||||||||||||| ||||||||  ||||||||||||||||    
T  26754821 taggaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggt 26754774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 48375680 - 48375727
Alignment:
Q  195 taggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    ||||||| ||||||||||||| ||||||||  ||||||||||||||||    
T  48375680 taggaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggt 48375727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 1758404 - 1758459
Alignment:
Q  167 tcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaa 224  Q
    ||||||||| ||||||||||  ||||||||||||| ||||||||||||  ||||||||    
T  1758404 tcatacacctttgtacaccc--atgcattaggaagagagaagaggagatgaaagagaa 1758459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 11907488 - 11907450
Alignment:
Q  204 agaagaggagagaaaagagaatgtgtgcttgtgcggggt 242  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  11907488 agaagaggagagaaaagagaaaatgtgcttgtgcggggt 11907450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 13897989 - 13898070
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtg 236  Q
    |||||||||||||||||||||  || |||| |||||| || |||| || |||||||| |||  |||||||| |||||||||||    
T  13897989 acaccatttattctcatacacttttctaca-ccccatacactagggagagagaagagaagatgaaagagaaagtgtgcttgtg 13898070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 43746517 - 43746436
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaa 224  Q
    |||| |||||| ||||| ||| || ||||||||||||||||| || |||||| |||||||  |||||||||||  ||||||||    
T  43746517 aatgttacataaacaccctttgttgtcatacacccttgtaca-cctcatgcactaggaagaaagaagaggagatgaaagagaa 43746436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 33118784 - 33118860
Alignment:
Q  154 acaccatttattctcatacacccttgtacacccccatgcattaggaagggagaa-gaggagagaaaagagaatgtgtg 230  Q
    ||||| ||||||  |||||||||||||||| ||||||||| |||| || ||||| |||||||| |||||||| |||||    
T  33118784 acaccctttatttccatacacccttgtaca-ccccatgcactagggagagagaaggaggagaggaaagagaaagtgtg 33118860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 4211 - 4110
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgc 237  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||| |||    
T  4211 gagtaatgatacatagacaccatttattcccatacacccttgtaca-ccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgc 4113  T
Q  238 ggg 240  Q
    |||    
T  4112 ggg 4110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 10027 - 10123
Alignment:
Q  138 gagtaatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgt 235  Q
    ||||||||||||||| |||||  |||||  |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  10027 gagtaatgatacatagacacccattatttccatacacccttgtacaccct-atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgt 10123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 851 - 948
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||| ||||||| ||||||| |||||||||||| ||||| ||||||| ||||||||||||| |||||||| |||||||||||||||    
T  851 aatgttacataaacaccctttattcccatacactcttgtacacccc-atgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 851 - 948
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcggg 240  Q
    |||| |||||| ||||| ||||||| ||||||| |||||||||||| ||||| ||||||| ||||||||||||| |||||||| |||||||||||||||    
T  851 aatgttacataaacaccctttattcccatacactcttgtacacccc-atgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 8785 - 8884
Alignment:
Q  142 aatgatacatatacaccatttattctcatacacccttgtacacccccatgcattaggaagggagaagaggagagaaaagagaatgtgtgcttgtgcgggg 241  Q
    |||| |||||| ||||| |||||||| ||||||||||||||| ||||||  ||||||||| ||||||| | ||| ||||||||  ||| |||||| ||||    
T  8785 aatgttacatagacaccttttattcttatacacccttgtaca-ccccatatattaggaagagagaagatgggaggaaagagaaaatgtacttgtgtgggg 8883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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