View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_31 (Length: 226)
Name: NF20484_low_31
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 6456168 - 6455985
Alignment:
| Q |
40 |
tcatggagatgtgcaccaaaagctaaactttttactacatattgggatcaattaatacattgaagatataatgaatgagtaatccaaaagcatcgttaag |
139 |
Q |
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| T |
6456168 |
tcatggagatgtgcaccaaaagctaaactttttactacatattgggatcaattaatacattgaagatataatgaatgagtaatccaaaagcatcattaag |
6456069 |
T |
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| Q |
140 |
ggagcacgtaaaaaatgaccacccacatacctataaaaagccctaggcattttttgtcaaaatctatgtactagtacacttctt |
223 |
Q |
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| T |
6456068 |
ggagcacgtaaaaaatgaccacccacatacctataaaaagccctaggcattttttgtcaaaatctatgtactagtacacttctt |
6455985 |
T |
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Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 6596316 - 6596467
Alignment:
| Q |
44 |
ggagatgtgcaccaaaagcta--aactttttactacatattgggatcaattaatacattgaagatataatgaatgagtaatccaaaagcatcgttaaggg |
141 |
Q |
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|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6596316 |
ggagatgtgcacaataagctataaactttttactacatattgggatcaattaatacattgaagatataatgaatgagtaatccaaaagcatcgttaaggg |
6596415 |
T |
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| Q |
142 |
agcacgtaaaaaatgaccacccacatacctataaaaagccctaggcatttttt |
194 |
Q |
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| T |
6596416 |
agcacgtaaaaaatgaccacccacatacctataaaaagccc-aggcatttttt |
6596467 |
T |
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