View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20484_low_4 (Length: 556)

Name: NF20484_low_4
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20484_low_4
NF20484_low_4
[»] chr3 (12 HSPs)
chr3 (12-502)||(36866694-36867185)
chr3 (112-199)||(36849391-36849478)
chr3 (12-70)||(36850849-36850907)
chr3 (133-199)||(36861218-36861286)
chr3 (265-376)||(36860918-36861027)
chr3 (391-437)||(36860830-36860876)
chr3 (459-501)||(19256603-19256645)
chr3 (466-504)||(19258051-19258089)
chr3 (394-432)||(36849060-36849098)
chr3 (476-504)||(36860798-36860826)
chr3 (12-52)||(36861367-36861407)
chr3 (30-62)||(37372017-37372049)


Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 502
Target Start/End: Complemental strand, 36867185 - 36866694
Alignment:
Q  12 aagaatagccatcatcctaatgtgatactgcacaa-tatttatagactactaaagcaagtgttaattgtggattcctccaattttattttaggnnnnnnn 110  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  36867185 aagaatagccatcatcctaatgtgatactgcacaaatatttatagactactaaagcaagtgttaattgtggattcctccaattttattttaggaaaaaaa 36867086  T
Q  111 caagatgtgactatatgaaagtaatacaataattataaaacaggaacaactcagaagatttcataccataacccgatatgaatgattgcagaaaagcagc 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36867085 caagatgtgattatatgaaagtaatacaataattataaaacaggaacaactcagaagatttcataccataacccgatatgaatgattgcagaaaagcaac 36866986  T
Q  211 ctatgcaaaagatccaaatcttgacacacatggtattacgtaatatatataataacggtctttttgattgaaaacaataaagtgttaattaaaggtatnn 310  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  36866985 ctatgc-aaagatccaaatcttgacacacatggtattacgtaatatatataataacggtctttttgattgaaaacaataaagtgttaattaaaggtataa 36866887  T
Q  311 nnnnntgatgtattgatgaaaatcacctgcaaattgaagtttctaaaccctcagcgtttaaagcagcccnnnnnnncttggatctaaaagcagaaagaaa 410  Q
         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  36866886 aaaaatgatgtattaatgaaaatcacctgcaaattgaagtttctaaaccctcagcgtttaaagcagccctttttttcttggatctaaaagcagaaagaaa 36866787  T
Q  411 ag-aaagaaacaatattacaacacatattcttgtgacccctnnnnnnnntgtatgtaataataatatggggaataattcatattgatttcccc 502  Q
    || |||||||||||||||||||||||||||||| |||||||        ||||||||||||||||||| ||||||||||||||||||||||||    
T  36866786 agaaaagaaacaatattacaacacatattcttgcgacccctaaaaaaaatgtatgtaataataatatgaggaataattcatattgatttcccc 36866694  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 36849478 - 36849391
Alignment:
Q  112 aagatgtgactatatgaaagtaatacaataattataaaacaggaacaactcagaagatttcataccataacccgatatgaatgattgc 199  Q
    |||| |||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36849478 aagacgtgactacgtgaaagtaacacaataattataaagcaggaacaactcagaagatttcataccataacccgatatggatgattgc 36849391  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 36850907 - 36850849
Alignment:
Q  12 aagaatagccatcatcctaatgtgatactgcacaatatttatagactactaaagcaagt 70  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  36850907 aagaatagctatcatcctaatgtgatactgcacaatatttatagactacaaaagaaagt 36850849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 36861286 - 36861218
Alignment:
Q  133 aatacaataattataaaacaggaacaactca--gaagatttcataccataacccgatatgaatgattgc 199  Q
    |||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||| ||||||||    
T  36861286 aatacaataattataaaacaggaacatctaaaagaagatttcataccataacccgatatggatgattgc 36861218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 376
Target Start/End: Complemental strand, 36861027 - 36860918
Alignment:
Q  265 acggtctttttgattgaaaacaataaagtgttaattaaaggtatnnnnnnntgatgtattgatgaaaatcacctgcaaattgaagtttctaaaccctcag 364  Q
    |||||||||||||||||||||||||| ||||||||| |||||||         || || | ||||||||||||||||||  |||||||||||||||||||    
T  36861027 acggtctttttgattgaaaacaataatgtgttaattgaaggtataaaaaaa-aatatactcatgaaaatcacctgcaaa-agaagtttctaaaccctcag 36860930  T
Q  365 cgtttaaagcag 376  Q
    | ||||||||||    
T  36860929 catttaaagcag 36860918  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 36860876 - 36860830
Alignment:
Q  391 gatctaaaagcagaaagaaaagaaagaaacaatattacaacacatat 437  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||    
T  36860876 gatctaaaagcagaaagcaatgaaagaaacaatattacaacacatat 36860830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 501
Target Start/End: Original strand, 19256603 - 19256645
Alignment:
Q  459 tgtatgtaataataatatggggaataattcatattgatttccc 501  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||    
T  19256603 tgtatataataataatctggtgaataattcatattgatttccc 19256645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 504
Target Start/End: Complemental strand, 19258089 - 19258051
Alignment:
Q  466 aataataatatggggaataattcatattgatttccccct 504  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  19258089 aataataatctggtgaataattcatattgatttccccct 19258051  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 36849098 - 36849060
Alignment:
Q  394 ctaaaagcagaaagaaaagaaagaaacaatattacaaca 432  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  36849098 ctaaaagcagaaagcaaagaaagaaacaacattacaaca 36849060  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 504
Target Start/End: Complemental strand, 36860826 - 36860798
Alignment:
Q  476 tggggaataattcatattgatttccccct 504  Q
    |||||||||||||||||||||||||||||    
T  36860826 tggggaataattcatattgatttccccct 36860798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 36861407 - 36861367
Alignment:
Q  12 aagaatagccatcatcctaatgtgatactgcacaatattta 52  Q
    ||||||||| |||| ||||||||||||||||| ||||||||    
T  36861407 aagaatagctatcagcctaatgtgatactgcagaatattta 36861367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 37372017 - 37372049
Alignment:
Q  30 aatgtgatactgcacaatatttatagactacta 62  Q
    |||| ||||||||||||||||||||||||||||    
T  37372017 aatgagatactgcacaatatttatagactacta 37372049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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