View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_5 (Length: 545)
Name: NF20484_low_5
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 22324068 - 22323807
Alignment:
| Q |
13 |
aatattggataaaatcgaataaaaccacaatgagacacaactaaaaaagtgttgcattaagaagaagaa---cgacaaaacaatgtctcaatcaaacgac |
109 |
Q |
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| T |
22324068 |
aatattggatagaatcgaacaaaaccacaatgagacacaac-aaaaaagtgctgcattaagaagaagaagaacgacaaaacaatgtctcaatcaaacgac |
22323970 |
T |
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| Q |
110 |
gaaattatgaaagaaaaacaatcacttatttaaagaaaaaggaaggaataatgatttagatgagcaattttgaatgaaaaattagtcttaaatcatcttt |
209 |
Q |
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| T |
22323969 |
gaaattatgaaagaaaaacaatcacttatttaaagaaaaaggaaggaatgatgatttagatgagcaattttgaatgaaaaattagtcttaaatcatcttt |
22323870 |
T |
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| Q |
210 |
ctcacgtggatgaagaagaaaagatgaaaagaaaacagacgaggggttaggttagagagagga |
272 |
Q |
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| T |
22323869 |
ctcacgtggatgaagtagaaaagatgaaaagaaaacagacgaggggttaggttagagagagga |
22323807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 312 - 528
Target Start/End: Complemental strand, 22323767 - 22323551
Alignment:
| Q |
312 |
gtattcattctacttgctatctcacaataaactaccagctacaccattttaacgggtatatctttacattcagcccaccgtaatagataaaaacattcaa |
411 |
Q |
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| T |
22323767 |
gtattcattctacttgctatctcacaataatctaccagctacaccattttaacgggtatatctttacattcagcccaccgtaatagataaaaacattcaa |
22323668 |
T |
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| Q |
412 |
tcaattataaataaggaaaatgctaacgagatatctgagacactctttaaataaatgnnnnnnnnnncacccacaataaaagttataacaatattgaaca |
511 |
Q |
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| T |
22323667 |
tcaattataaataaggaaaatgttaacgagatatctgagacactctttaaataaatgttttttttttcacccacaataaaagttataacaatattgaaca |
22323568 |
T |
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| Q |
512 |
atattaaggaaggaggt |
528 |
Q |
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| T |
22323567 |
atattaaggaaggaggt |
22323551 |
T |
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