View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_6 (Length: 544)
Name: NF20484_low_6
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 8893808 - 8894248
Alignment:
| Q |
13 |
attctcatccaacaccaaaccattcaaaacatccaccgaaactggaaccggcacgcctcctaaaactggtgataccgacacggtttcatgcttctccaag |
112 |
Q |
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| T |
8893808 |
attctcatccaacaccaaaccattcaaaacatccaccgaaactggaaccggcacgcctcctaaaactggtgataccgacacggtttcatgcttctccaag |
8893907 |
T |
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| Q |
113 |
taaagcgacggaagcatatgatgaggtgtaatcggatggtttctatatgacacaaaggtggaaagcctgtcaaagtaaatggatactcgcttgtttggat |
212 |
Q |
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| T |
8893908 |
taaagcgacggaagcatatgatgaggtgtaatcggatggtttctatatgacacaaaggtggaaagcctgtcaaagtaaatggatactcgcttgtttggat |
8894007 |
T |
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| Q |
213 |
tccttatgaagattgtgaattgcattgagattgacatgtctggtggtgaagttgcattgaggccatagatagcagcacttgtgactgtgatgtgaggttt |
312 |
Q |
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| T |
8894008 |
tccttatgaagattgtgaattgcattgagattgacatgtctggcggtgaagtagcattgaggctatagattgcagcacttgtgactgtgatatgaggttt |
8894107 |
T |
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| Q |
313 |
tgtgggatggtatgcaagccataagatgaggattataatgccaagtacgaggaagaagattgtgatgcatatgcagtgttcacgttttggagcattaggt |
412 |
Q |
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| T |
8894108 |
tgagggatggtatgcaagccataagatgaggattataatgccaagtacaaggaagaagattgtgatgcatatgcagtgttcacgttttggagcattaggt |
8894207 |
T |
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| Q |
413 |
actctataacgaggaaccatacatttgtcttccatgggata |
453 |
Q |
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| T |
8894208 |
actctataacgaggaaccatacctttgtgttccatgggata |
8894248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 212350 - 212389
Alignment:
| Q |
339 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
378 |
Q |
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| T |
212350 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
212389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 378
Target Start/End: Complemental strand, 239904 - 239865
Alignment:
| Q |
339 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
378 |
Q |
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| T |
239904 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
239865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 725973 - 726012
Alignment:
| Q |
339 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
378 |
Q |
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| T |
725973 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
726012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 378
Target Start/End: Complemental strand, 793259 - 793220
Alignment:
| Q |
339 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
378 |
Q |
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| T |
793259 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
793220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 798474 - 798513
Alignment:
| Q |
339 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
378 |
Q |
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| T |
798474 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
798513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 320 - 402
Target Start/End: Original strand, 24281855 - 24281937
Alignment:
| Q |
320 |
tggtatgcaagccataagatgaggattataatgccaagtacgaggaagaagattgtgatgcatatgcagtgttcacgttttgg |
402 |
Q |
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| T |
24281855 |
tggtatgcaagccataagatgagcagtataatgccaagtaagaggaagaagattgtgatgcatatgcaatattcacgttttgg |
24281937 |
T |
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