View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_7 (Length: 538)
Name: NF20484_low_7
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 43 - 521
Target Start/End: Original strand, 38024590 - 38025068
Alignment:
| Q |
43 |
gtgaaaacaaattttttaggcacgtttaagataaggacccattaagatgagttggatggagtgaatgtaatgacaaagtggtccaaggtagattattttg |
142 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024590 |
gtgaaaacaatttttttagacacgtttaagataaggacccattaagatgagttggatggagtgaatgtaatgacaaagtggtccaaggtagattattttg |
38024689 |
T |
|
| Q |
143 |
ttttatttaatttccaaaaccagtagatatagcctatggtttctccaaaaccaagggtgttatttatctagctagctcatggtatcttatttcaatccat |
242 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024690 |
ttttacttaatttccaaaaccagtagatatagcctatggtttctccaaaaccaagggtgttatttatctagctagctcatggtatcttatttcaatccat |
38024789 |
T |
|
| Q |
243 |
ataaataatattagccatcactcctctctactccatcaatcaacagtctcattttcatatttaccaaacaacactatctacttcttctatattttgatat |
342 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024790 |
ataaataagattagccatcactcctctctactccatcaatcaacaatctcattttcatatttaccaaacaacactatctacttcttctatattttgatat |
38024889 |
T |
|
| Q |
343 |
ccaatccaaaaactaacaaccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatggtggctgcaagtgttggagttgtggaagctttgaaa |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024890 |
ccaatccaaaaactaacaaccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatggtggctgcaagtgttggagttgtggaagctttgaaa |
38024989 |
T |
|
| Q |
443 |
gatcaagctggtatctgtaggtggaactatgctttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatgt |
521 |
Q |
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| T |
38024990 |
gatcaagctggtatctgtaggtggaactatgctttaagacaagctcaacaacaccttaaaaaccgtgctaaatcaatgt |
38025068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 44 - 519
Target Start/End: Original strand, 38031348 - 38031806
Alignment:
| Q |
44 |
tgaaaacaaattttttaggcacgtttaagataaggacccattaagatgagttggatggagtga--atgtaatgacaaagtggtccaaggtagattatttt |
141 |
Q |
| |
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|||||| || ||||||||||||||||| |||||| |||||| || ||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |
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| T |
38031348 |
tgaaaataatttttttaggcacgtttaggataagaacccatcaaagtgagttggatgcagtgatcacgtaatgacaaagtggtccaaggtagattatttt |
38031447 |
T |
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| Q |
142 |
gttttatttaatttccaaaaccagtagatatagcctatggtttctccaaaaccaagggtgttatt---tatctagctagctcatggtatcttatttcaat |
238 |
Q |
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| T |
38031448 |
gttttatttaatttccaaaaccagtagacatagcctatggtttctccaaaaccaagtgtattattagttatctagctagctcatggtatcttatttcaat |
38031547 |
T |
|
| Q |
239 |
ccatataaataatattagccatcactcctctctactccatcaa-tcaacagtctcattttcatatttaccaaacaacactatctacttcttctatatttt |
337 |
Q |
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| T |
38031548 |
ata-ataaataagatcgaacatgactcctctctacttcatcaaatcaacaatcttattttcttatttaccaaacaacactgtctacttct---aaatttt |
38031643 |
T |
|
| Q |
338 |
gatatccaatccaaaaactaacaaccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatggtggctgcaagtgttggagttgtggaagctt |
437 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
38031644 |
gatatccaa-------------------aaatcatgaatcgtgcaacagcaacaagcaaagcatggatggtggctgcaagtgttggagttgtggaggctt |
38031724 |
T |
|
| Q |
438 |
tgaaagatcaagctggtatctgtaggtggaactatgctttaagacaagctcaacaacaccttaaaaaccgtgttagatcaat |
519 |
Q |
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||||||| ||||||||||| || || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38031725 |
tgaaagaccaagctggtatttgcagatggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaat |
38031806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 362 - 519
Target Start/End: Original strand, 38003398 - 38003555
Alignment:
| Q |
362 |
ccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatggtggctgcaagtgttggagttgtggaagctttgaaagatcaagctggtatctgta |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38003398 |
ccaaaaatcatgaatcgtgcaacagcaacaagcaaagcatggatggtggctgcaagtgttggagttgtggaagctttgaaagatcaagctggtatttgta |
38003497 |
T |
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| Q |
462 |
ggtggaactatgctttaagacaagctcaacaacaccttaaaaaccgtgttagatcaat |
519 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38003498 |
ggtggaattatgctttaagacaagctcaacaacaccttaaaaaccgtgttagatcaat |
38003555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 38003336 - 38003381
Alignment:
| Q |
277 |
atcaatcaacagtctcattttcatatttaccaaacaacactatcta |
322 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
38003336 |
atcaatcaacaaactcactttcatatttaccaaacaacactatcta |
38003381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 449
Target Start/End: Original strand, 38033799 - 38033834
Alignment:
| Q |
414 |
caagtgttggagttgtggaagctttgaaagatcaag |
449 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
38033799 |
caagtgttggagttgtggaggctttgaaagatcaag |
38033834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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