View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_low_8 (Length: 537)
Name: NF20484_low_8
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_low_8 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 11778456 - 11778710
Alignment:
| Q |
17 |
caaaaccatcctaacaaggacagatcaagaagttagttgtgtggtaacttttatgggccaagaagtaatgaatacataaacgcaaacaactcatttttat |
116 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
11778456 |
caaaaccatcctaacaaggacatatcaagaagttagttgagtggtgacttttatggaccaagaagtaatgaatacataaacgcaaacaactcattttgat |
11778555 |
T |
|
| Q |
117 |
tgaagaagaaaatttcgttcaatggaggaatacaatgaagttttgctagaagctcaattagatgatcttgtagatggtgctgttgattatagaggacaac |
216 |
Q |
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||||||||||||||| |||| ||||| ||||||||||| |||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11778556 |
tgaagaagaaaatttggttcgatggaagaatacaatgatgttttgttagatgctaaattagctgatcttgtagatggtgctgttgattatagaggacaac |
11778655 |
T |
|
| Q |
217 |
ctgccatcagatcaaaatctggttattggctatccgcttggtttatcataggtac |
271 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11778656 |
ctgccatcagatccaaatctggttattggctatccgcttggtttatcataggtac |
11778710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 326 - 526
Target Start/End: Original strand, 11778955 - 11779155
Alignment:
| Q |
326 |
gataattgaaatgaattgtgaatgttaatttaggtgtggaggtggcagagaggatgtcatattttgggattaagggaaacttgatatcatatctaacagg |
425 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11778955 |
gataactgaaataaattgtgaatgttaatttaggtgtggaggtggcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagg |
11779054 |
T |
|
| Q |
426 |
accactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgctttcattgctgattct |
525 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11779055 |
gccactcaaacaaagcactgcaactgctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgcattcattgctgattct |
11779154 |
T |
|
| Q |
526 |
t |
526 |
Q |
| |
|
| |
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|
| T |
11779155 |
t |
11779155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 75 - 276
Target Start/End: Original strand, 11797084 - 11797286
Alignment:
| Q |
75 |
caagaagtaatgaatacataaacgcaaacaa-ctcatttttattgaagaagaaaatttcgttcaatggaggaatacaatgaagttttgctagaagctcaa |
173 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| |
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| T |
11797084 |
caagaagtaatgaatacataaacgcaaaaaaactcattttcattgaagaagaaaatttggttcaatggaggaatacaatgacgttttgttagaagctcaa |
11797183 |
T |
|
| Q |
174 |
ttagatgatcttgtagatggtgctgttgattatagaggacaacctgccatcagatcaaaatctggttattggctatccgcttggtttatcataggtacta |
273 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11797184 |
ttaactgatcttgtagatggtgctgttgattatagagggcaacctgcaatcagatccaaatctggttattggcgatccgcttggtttatcataggtacta |
11797283 |
T |
|
| Q |
274 |
ctt |
276 |
Q |
| |
|
||| |
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|
| T |
11797284 |
ctt |
11797286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 313 - 526
Target Start/End: Original strand, 11797803 - 11798017
Alignment:
| Q |
313 |
ttctaaatgtaatgataattgaaatgaattgtgaatgttaa-tttaggtgtggaggtggcagagaggatgtcatattttgggattaagggaaacttgata |
411 |
Q |
| |
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||||||||| ||||| |||||||||||||| ||||||||| |||||||||||| |||||||||||| | ||||||| ||| ||| | || || |||||| |
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| T |
11797803 |
ttctaaatgcaatgagaattgaaatgaattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgata |
11797902 |
T |
|
| Q |
412 |
tcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgctt |
511 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
11797903 |
tcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctctttggtgctt |
11798002 |
T |
|
| Q |
512 |
tcattgctgattctt |
526 |
Q |
| |
|
||||||||||||||| |
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|
| T |
11798003 |
tcattgctgattctt |
11798017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 335 - 526
Target Start/End: Original strand, 11695984 - 11696176
Alignment:
| Q |
335 |
aatgaattgtgaatgtta-atttaggtgtggaggtggcagagaggatgtcatattttgggattaagggaaacttgatatcatatctaacaggaccactca |
433 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| ||| | || || |||||||||||||||||||||||||||| |
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| T |
11695984 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
11696083 |
T |
|
| Q |
434 |
aacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgctttcattgctgattctt |
526 |
Q |
| |
|
|||||| |||||||| ||||||| | ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
11696084 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattctt |
11696176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 356 - 526
Target Start/End: Original strand, 11675910 - 11676080
Alignment:
| Q |
356 |
taggtgtggaggtggcagagaggatgtcatattttgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgc |
455 |
Q |
| |
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|||||||||| |||||||||||| | ||||||| ||||||| | || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
11675910 |
taggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgc |
11676009 |
T |
|
| Q |
456 |
taagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgctttcattgctgattctt |
526 |
Q |
| |
|
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11676010 |
tgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattctt |
11676080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 356 - 526
Target Start/End: Original strand, 11684189 - 11684359
Alignment:
| Q |
356 |
taggtgtggaggtggcagagaggatgtcatattttgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgc |
455 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||| ||||||| | || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
11684189 |
taggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgc |
11684288 |
T |
|
| Q |
456 |
taagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgctttcattgctgattctt |
526 |
Q |
| |
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| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11684289 |
tgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattctt |
11684359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 324 - 526
Target Start/End: Original strand, 11701770 - 11701973
Alignment:
| Q |
324 |
atgataattgaaatgaattgtgaatgttaa-tttaggtgtggaggtggcagagaggatgtcatattttgggattaagggaaacttgatatcatatctaac |
422 |
Q |
| |
|
|||| |||| ||||| ||| ||||||||| |||||||||||| |||||||||||| | ||||||| ||| ||| | || || ||||||||||||||||| |
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|
| T |
11701770 |
atgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaac |
11701869 |
T |
|
| Q |
423 |
aggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgctttcattgctgat |
522 |
Q |
| |
|
||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| |
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|
| T |
11701870 |
agggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgat |
11701969 |
T |
|
| Q |
523 |
tctt |
526 |
Q |
| |
|
|||| |
|
|
| T |
11701970 |
tctt |
11701973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 11695765 - 11695839
Alignment:
| Q |
198 |
gttgattatagaggacaacctgccatcagatcaaaatctggttattggctatccgcttggtttatcataggtact |
272 |
Q |
| |
|
||||| || ||||||||||||||| | ||||| ||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
11695765 |
gttgactacagaggacaacctgccgttagatccaaaactggctattggagatccgcttggtttatcataggtact |
11695839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 270
Target Start/End: Original strand, 11701497 - 11701626
Alignment:
| Q |
138 |
atggaggaatacaatgaagttttgctagaagctcaattagatgatcttgtagatggtgctgttgattatagaggacaacctgccatcagatcaaaatctg |
237 |
Q |
| |
|
||||| |||| ||||||||| ||| |||||||||||||| | ||||| ||||| |||||||| || | ||||| ||||| | || | ||||||| |
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|
| T |
11701497 |
atggaagaatccaatgaagtgttgttagaagctcaattatct---cttgttgatggcgctgttgactacaatggacagcctgcagttaggtttaaatctg |
11701593 |
T |
|
| Q |
238 |
gttattggctatccgcttggtttatcataggta |
270 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
11701594 |
gttattggagatccgcttggtttatcataggta |
11701626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 324 - 526
Target Start/End: Original strand, 16415 - 16618
Alignment:
| Q |
324 |
atgataattgaaatgaattgtgaatgttaa-tttaggtgtggaggtggcagagaggatgtcatattttgggattaagggaaacttgatatcatatctaac |
422 |
Q |
| |
|
|||| |||||||||| ||| ||||||||| |||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
16415 |
atgagaattgaaatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaac |
16514 |
T |
|
| Q |
423 |
aggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgctttcattgctgat |
522 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |
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|
| T |
16515 |
aggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgctttcgttgctgat |
16614 |
T |
|
| Q |
523 |
tctt |
526 |
Q |
| |
|
|||| |
|
|
| T |
16615 |
tctt |
16618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 15841 - 15914
Alignment:
| Q |
198 |
gttgattatagaggacaacctgccatcagatcaaaatctggttattggctatccgcttggtttatcataggtac |
271 |
Q |
| |
|
||||| || ||||||||||||||| | || || ||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
15841 |
gttgactacagaggacaacctgccgttaggtccaaatctggttactggagatccgcttggtttatcataggtac |
15914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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