View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_high_12 (Length: 255)
Name: NF20485_high_12
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_high_12 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 31106483 - 31106245
Alignment:
| Q |
17 |
accattatcatattatatggtccaagtcttcaacttacgtaacttgcacaaatagagagacggtggtgtacaaggaagcgaatgcaacgatgacaaggtt |
116 |
Q |
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| T |
31106483 |
accattatcatattatatggtccaagtcttcaacttacgtgacttgcacaaatagagagacggtggtgttcaaggaagcgaatgcaacgatgacaaggtt |
31106384 |
T |
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| Q |
117 |
atgaacgcaggagcatcccgaagcagtgtcttcaagggatatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaat |
216 |
Q |
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| T |
31106383 |
atgaacgcaggagcatcccgaagcagtgacttcaagggatatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaat |
31106284 |
T |
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| Q |
217 |
aagatgatggaaaactacaagctagttgtcagcaccatt |
255 |
Q |
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| T |
31106283 |
aagatgatggaaaactacaagctagttgtcagcaccatt |
31106245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 31042699 - 31042617
Alignment:
| Q |
155 |
atatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatggaaaactacaag |
237 |
Q |
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| T |
31042699 |
atatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagacaattgagaactacaag |
31042617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 31107988 - 31107925
Alignment:
| Q |
157 |
atcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataaga |
220 |
Q |
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| T |
31107988 |
atcaaagacctagcagaaatcatgaaactatcaccactcatatagttgaagagaataaataaga |
31107925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 31042924 - 31042820
Alignment:
| Q |
23 |
atcatattatatggtccaagtcttcaa---cttacgtaacttgcacaaatagagagacggtggtgtacaaggaagcgaatgcaacgatgacaaggttatg |
119 |
Q |
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|||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| || | |||||| | ||||||||| ||||||||| | |
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| T |
31042924 |
atcatattatatggtccaagtctttaattacttctgtaacttgcacaaatagagagacggtggcgtgcgaggaagaggatgcaacgactacaaggttacg |
31042825 |
T |
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| Q |
120 |
aacgc |
124 |
Q |
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| T |
31042824 |
aacgc |
31042820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31094849 - 31094907
Alignment:
| Q |
18 |
ccattatcatattatatggtccaagtcttcaacttacgtaacttgcacaaatagagaga |
76 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
31094849 |
ccatgatcatattatatggtccaagtcttcaacttaagtaactagcacaaatagagaga |
31094907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 31050467 - 31050414
Alignment:
| Q |
23 |
atcatattatatggtccaagtcttcaacttacgtaacttgcacaaatagagaga |
76 |
Q |
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|||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
31050467 |
atcatactatatggtccaagtcttcaacttgagtaactagcacaaatagagaga |
31050414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 3565 - 3628
Alignment:
| Q |
18 |
ccattatcatattatatggtccaagtcttcaacttacgtaacttgcacaaatagagagacggtg |
81 |
Q |
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|||| ||||||||||| |||||||||||||||||| |||||| |||||||| |||||| |||| |
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| T |
3565 |
ccatgatcatattataaggtccaagtcttcaacttcagtaactagcacaaatggagagatggtg |
3628 |
T |
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