View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20485_high_15 (Length: 249)

Name: NF20485_high_15
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20485_high_15
NF20485_high_15
[»] chr8 (15 HSPs)
chr8 (23-236)||(35152886-35153099)
chr8 (150-236)||(25830233-25830319)
chr8 (149-236)||(43397778-43397864)
chr8 (142-216)||(3946230-3946304)
chr8 (151-216)||(34718114-34718179)
chr8 (152-216)||(33100476-33100540)
chr8 (152-236)||(35067160-35067244)
chr8 (152-236)||(43285950-43286034)
chr8 (149-236)||(12284257-12284344)
chr8 (151-216)||(26026895-26026960)
chr8 (151-216)||(29991411-29991476)
chr8 (152-237)||(42619963-42620048)
chr8 (152-216)||(5277711-5277775)
chr8 (152-216)||(10644809-10644873)
chr8 (152-236)||(43715875-43715958)
[»] chr5 (13 HSPs)
chr5 (151-236)||(21922132-21922217)
chr5 (151-236)||(22098254-22098339)
chr5 (152-236)||(14011317-14011401)
chr5 (152-236)||(24468273-24468357)
chr5 (152-236)||(18660759-18660842)
chr5 (152-216)||(18695318-18695382)
chr5 (152-232)||(27546063-27546143)
chr5 (150-216)||(43441736-43441802)
chr5 (152-221)||(17097804-17097873)
chr5 (151-236)||(28306120-28306204)
chr5 (152-216)||(8920078-8920142)
chr5 (150-234)||(16690497-16690581)
chr5 (152-236)||(22649649-22649732)
[»] chr2 (17 HSPs)
chr2 (151-236)||(12784386-12784471)
chr2 (152-216)||(18723594-18723658)
chr2 (152-236)||(38821366-38821450)
chr2 (155-234)||(26481079-26481158)
chr2 (155-237)||(45259271-45259353)
chr2 (154-215)||(14233727-14233788)
chr2 (152-216)||(2841834-2841898)
chr2 (152-216)||(5031923-5031987)
chr2 (152-236)||(6336252-6336336)
chr2 (152-236)||(9207590-9207673)
chr2 (152-236)||(18254197-18254280)
chr2 (188-236)||(33737321-33737369)
chr2 (152-216)||(36802896-36802960)
chr2 (152-216)||(38560678-38560742)
chr2 (152-216)||(39449124-39449188)
chr2 (152-236)||(41042254-41042337)
chr2 (152-216)||(44484664-44484727)
[»] chr7 (10 HSPs)
chr7 (152-236)||(43159562-43159646)
chr7 (152-234)||(47448826-47448908)
chr7 (152-236)||(41018663-41018747)
chr7 (152-236)||(44895560-44895643)
chr7 (152-216)||(46829479-46829543)
chr7 (149-236)||(40854642-40854729)
chr7 (152-236)||(4971290-4971373)
chr7 (152-216)||(12007193-12007257)
chr7 (152-236)||(30941386-30941469)
chr7 (152-232)||(42584802-42584882)
[»] chr4 (14 HSPs)
chr4 (152-232)||(47288082-47288162)
chr4 (149-216)||(21617180-21617247)
chr4 (151-216)||(3078915-3078980)
chr4 (152-236)||(44257717-44257801)
chr4 (150-216)||(14593826-14593892)
chr4 (150-236)||(36123447-36123533)
chr4 (150-215)||(51887661-51887726)
chr4 (152-216)||(2004196-2004260)
chr4 (152-236)||(37297049-37297132)
chr4 (152-216)||(37514139-37514203)
chr4 (152-216)||(42815404-42815468)
chr4 (152-216)||(51255746-51255810)
chr4 (152-236)||(52204850-52204934)
chr4 (152-236)||(56557733-56557817)
[»] chr1 (16 HSPs)
chr1 (152-236)||(30535991-30536075)
chr1 (152-236)||(35369700-35369783)
chr1 (149-219)||(52714905-52714975)
chr1 (152-236)||(649768-649852)
chr1 (152-236)||(12999810-12999893)
chr1 (148-216)||(44789150-44789218)
chr1 (152-235)||(9566949-9567032)
chr1 (149-232)||(49931550-49931633)
chr1 (151-236)||(37685330-37685414)
chr1 (151-236)||(37700104-37700188)
chr1 (151-236)||(49020391-49020476)
chr1 (152-236)||(9987951-9988035)
chr1 (152-216)||(21433408-21433472)
chr1 (148-236)||(30505324-30505411)
chr1 (152-216)||(48983675-48983739)
chr1 (152-236)||(49446785-49446869)
[»] chr3 (18 HSPs)
chr3 (149-216)||(14207265-14207332)
chr3 (149-216)||(14215013-14215080)
chr3 (150-216)||(29573363-29573429)
chr3 (152-236)||(10811135-10811219)
chr3 (168-236)||(26452710-26452778)
chr3 (152-236)||(38926628-38926711)
chr3 (152-236)||(48405410-48405494)
chr3 (150-236)||(48352994-48353080)
chr3 (151-236)||(26014811-26014895)
chr3 (194-235)||(41717304-41717345)
chr3 (168-236)||(13712775-13712843)
chr3 (152-236)||(20547978-20548061)
chr3 (148-216)||(24482970-24483038)
chr3 (152-216)||(26996316-26996380)
chr3 (152-216)||(27718793-27718857)
chr3 (152-216)||(37894250-37894314)
chr3 (152-236)||(45186539-45186623)
chr3 (152-236)||(49761174-49761257)
[»] chr6 (10 HSPs)
chr6 (152-213)||(15368833-15368894)
chr6 (152-236)||(16368034-16368118)
chr6 (151-236)||(25811826-25811910)
chr6 (152-216)||(2242029-2242093)
chr6 (152-216)||(15318195-15318259)
chr6 (152-236)||(16337910-16337994)
chr6 (152-216)||(17181943-17182007)
chr6 (152-216)||(17551386-17551450)
chr6 (152-236)||(25127820-25127904)
chr6 (152-216)||(33421760-33421824)
[»] scaffold0201 (1 HSPs)
scaffold0201 (151-221)||(8471-8541)
[»] scaffold0005 (1 HSPs)
scaffold0005 (150-216)||(223486-223552)
[»] scaffold0432 (1 HSPs)
scaffold0432 (152-221)||(6522-6591)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 35152886 - 35153099
Alignment:
Q  23 caacattgtattagcaaattaggatggtaacaacctgcataataagctaatgcgaatgataaacttttacattctcttgtcattatttatttattggcga 122  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35152886 caacattgtattagcaaattaggatggtaacaacctgcacaataagctaatgcgaatgataaacttttacattctcttgtcattatttatttattggcga 35152985  T
Q  123 attttcattgtaccaattgttattgatttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgta 222  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||  |||||||||| ||| ||||||||||||||||||||    
T  35152986 attttcattgtaccaattgttatttatttgagaaatgatatttgaacaatcattttgtaacaatttttgttacaactttttatctcatactcacgttgta 35153085  T
Q  223 ttcttactttctct 236  Q
    ||||||||||||||    
T  35153086 ttcttactttctct 35153099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 25830319 - 25830233
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  25830319 ttgagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcacattatatttttactttctct 25830233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 43397778 - 43397864
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||||| |||||||| |||||| || |||  |||||||||| ||||| |||||||||||| || | || |||||||||||    
T  43397778 tttgagaaatgatatttgaacaaccatttttta-caacttttgttacaactttctctctcatactcacattatttttttactttctct 43397864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 3946230 - 3946304
Alignment:
Q  142 ttattgatttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||| ||||||||||| |||||||  |||||||| ||||  ||||| |||| ||||| ||||||||||||    
T  3946230 ttattgattagagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactcac 3946304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 34718114 - 34718179
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| ||||||||||||    
T  34718114 tgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatactcac 34718179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 33100540 - 33100476
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| ||||||  ||||| |||| ||||| ||||||||||||    
T  33100540 gagaaatgatatttgaacaaccattttataacaacttttgtgacaactttctctctcatactcac 33100476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 35067160 - 35067244
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||  ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  35067160 gagaaatgatatttgtacaaccatttcttaacaacttttgtgacaactttctctctcatactcacattatatttttactttctct 35067244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 43286034 - 43285950
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||| ||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  43286034 gagaaatgatatttggacaaccattttctaataacttttgtgacaactttctctctcatactcacattatatttttactttctct 43285950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 12284344 - 12284257
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||||| |||||||| ||||||   |||| |||||| |||| ||||| |||||||||||  || | || |||||||||||    
T  12284344 tttgagaaatgatatttgaacaaccatttttggacaacgtttgtgacaactttctctctcatactcatattttgtttttactttctct 12284257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 26026895 - 26026960
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  26026895 tgagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctttctcatactcac 26026960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 29991411 - 29991476
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| | ||||||||||    
T  29991411 tgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctttcatactcac 29991476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 42620048 - 42619963
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctcta 237  Q
    ||||||||||| ||| |||  |||||| ||||||  ||||| |||||||||| ||||||| ||| ||| |||| ||||| ||||||    
T  42620048 gagaaatgatatttgtacatccattttctaacaacttttgtgacaaatttctctctcatattcaagttatatttttactctctcta 42619963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 5277775 - 5277711
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||| ||||| ||||| ||||||||||||    
T  5277775 gagaaatgatatttgaacatccattttgtgacaacctttgctacaattttctctctcatactcac 5277711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 10644873 - 10644809
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||| ||||    
T  10644873 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctctcataatcac 10644809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 43715875 - 43715958
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||| ||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  43715875 gagaaatgatatttgtacaaccattttctaa-aacttttgtgacaactttctctctcatactcacattatatttttactttctct 43715958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 21922217 - 21922132
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||  |||||||| |||| |||||| |||| ||||| |||||||||||| |  |||||||| |||||||    
T  21922217 tgagaaatgatatttgaacatccattttgtgacaacgtttgtgacaactttctctctcatactcacatcatattcttattttctct 21922132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 22098254 - 22098339
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  22098254 tgagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcacattatatttttactttctct 22098339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 14011317 - 14011401
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||||||||||  ||||| |||| ||||||| ||| |||||  |||| | ||||||||||||    
T  14011317 gagaaatgatatttgaacaatcattttgtaacaacttttgtgacaactttctatttcacactcatattgtttccttactttctct 14011401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 24468357 - 24468273
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| ||||||  |||||  ||||| | || |||||||||||||||||| || |||| |||||||||||    
T  24468357 gagaaatgatatttgaacaaccatttttaaacaacttttgtgataactttctatctcatactcacattatatttttactttctct 24468273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 18660759 - 18660842
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||||| | || |||||||||||    
T  18660759 gagaaatgatatttgaacaaccatttt-tgacaacttttgtgacaattttctctctcatactcacgttatctttttactttctct 18660842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 18695318 - 18695382
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  18695318 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctctcatactcac 18695382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 27546063 - 27546143
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttacttt 232  Q
    ||||||||||| |||||||| |||||| | ||||| ||||| |||| ||| | |||||||||||| || |||| |||||||    
T  27546063 gagaaatgatatttgaacaatcattttatgacaaattttgtgacaactttatttctcatactcacattatatttttacttt 27546143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 43441736 - 43441802
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||| |||||||  |||||||||||||  ||||  |||| ||||| ||||||||||||    
T  43441736 ttgagaaatgatatttgaacatccattttgtaacaacttttgcaacaactttctctctcatactcac 43441802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 17097873 - 17097804
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgt 221  Q
    ||||||||||| |||||||| |||||| | | ||  ||||| |||| |||||||||||||||||| ||||    
T  17097873 gagaaatgatatttgaacaaccattttttgataacttttgtgacaattttctatctcatactcacattgt 17097804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 28306204 - 28306120
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||| | |||||||||||| || | ||||||||||||||    
T  28306204 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttatctctcatactcacattatcttcttactttctct 28306120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 8920078 - 8920142
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  ||||| |||| ||||| ||||||||||||    
T  8920078 gagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactcac 8920142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 16690497 - 16690581
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttct 234  Q
    ||||||||||||| ||| |||| |||||  ||||||  ||||| |||| ||||| | |||||||||| || |||| |||||||||    
T  16690497 ttgagaaatgatatttgtacaaccatttcttaacaacttttgtgacaactttctctttcatactcacattatatttttactttct 16690581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 22649732 - 22649649
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  22649732 gagaaatgatatttgaacaaccatttttta-caatttttgtgacaattttctctctcatactcacattatctttttactttctct 22649649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 12784471 - 12784386
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| ||| |||| |||||| ||| ||  ||||| |||| ||||| ||||||||||||||| |||| |||||||||||    
T  12784471 tgagaaatgatatttgtacaaccattttataataatttttgtgacaactttctctctcatactcacgttatatttttactttctct 12784386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 18723594 - 18723658
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| ||||||||||||    
T  18723594 gagaaatgatatttgaacatccattttgtgacaatttttgttacaactttctctctcatactcac 18723658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 38821366 - 38821450
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| |||| || |||| ||||||    
T  38821366 gagaaatgatatttgaacaaccattttatgacaacttttgtgacaattttctttctcatactcacattgtgtttttaccttctct 38821450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 26481158 - 26481079
Alignment:
Q  155 aaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttct 234  Q
    |||||||| ||||||||  ||||| ||||||  ||||| |||| ||||| ||||||||||||||||| ||  ||||||||    
T  26481158 aaatgatatttgaacaattattttttaacaacttttgtgacaattttctttctcatactcacgttgtttttctactttct 26481079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 45259353 - 45259271
Alignment:
Q  155 aaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctcta 237  Q
    |||||||| ||| |||  |||||| ||||||  ||||| |||| ||| ||||||||||||||||| |||| ||||| ||||||    
T  45259353 aaatgatatttgtacatccattttctaacaatttttgtgacaactttttatctcatactcacgttatatttttactctctcta 45259271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 14233788 - 14233727
Alignment:
Q  154 gaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactca 215  Q
    ||||||||| |||||||  |||||||| ||||  ||||| |||||||||| |||||||||||    
T  14233788 gaaatgatatttgaacatccattttgtgacaacttttgtgacaaatttctctctcatactca 14233727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 2841834 - 2841898
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||| ||  |||||||| ||||  |||||||||| ||||| ||||||||||||    
T  2841834 gagaaatgatatttgatcatccattttgtgacaacttttgttacaactttctttctcatactcac 2841898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 5031923 - 5031987
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||  |||| ||||| ||||||||||||    
T  5031923 gagaaatgatatttgtacaaccattttgtaacaacttttgcgacaactttctctctcatactcac 5031987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 6336252 - 6336336
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||  || |||| ||| |||||||    
T  6336252 gagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcatattatatttttattttctct 6336336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 9207590 - 9207673
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  9207590 gagaaatgatatttgaacaatcatttttta-caacttttgtgacaactttctctctcatactcacattatttttttactttctct 9207673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 18254280 - 18254197
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  18254280 gagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 18254197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 33737369 - 33737321
Alignment:
Q  188 tttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||| |||||||||| ||||||||||||||| | || |||||||||||    
T  33737369 tttgtgacaaatttctctctcatactcacgttatgtttttactttctct 33737321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 36802896 - 36802960
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||| ||||| ||||| ||||||||||||    
T  36802896 gagaaatgatatttgaacatccattttgtgacaacttttgctacaactttctctctcatactcac 36802960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 38560678 - 38560742
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| || ||||  |||||||||||||  |||||||||| ||||| | ||||||||||    
T  38560678 gagaaatgatattttaacattcattttgtaacaacttttgttacaactttctttgtcatactcac 38560742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 39449188 - 39449124
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| | ||||||||||    
T  39449188 gagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctttcatactcac 39449124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 41042254 - 41042337
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| ||||||  ||||| |||| ||| | |||||||||||| || | || |||||||||||    
T  41042254 gagaaatgatatttgaacaaccatttt-taacaacttttgtgacaactttttctctcatactcacattatctttttactttctct 41042337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 44484727 - 44484664
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  |||| ||||| ||||| ||||||||||||    
T  44484727 gagaaatgatatttgtacaaccattttgtaacaatttttg-tacaactttctctctcatactcac 44484664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 43159646 - 43159562
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| ||||||  ||||| |||| ||||||||||||||||   || |||| |||||||||||    
T  43159646 gagaaatgatatttgaacaaccattttttaacaatttttgtgacaactttctatctcatactcgtattatatttttactttctct 43159562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 47448826 - 47448908
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttct 234  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| |||| || |||||||||    
T  47448826 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattgtgtttttactttct 47448908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 41018663 - 41018747
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||||||||  |||||   ||||  ||||| |||| |||||||||||||||||| || |||| |||||||||||    
T  41018663 gagaaatgatatttgaacaactatttttggacaacttttgtgacaactttctatctcatactcacattatatttttactttctct 41018747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 44895643 - 44895560
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||||||||||| ||||||| | || |||||||||||    
T  44895643 gagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctatctcatattcacgttatctttttactttctct 44895560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 46829479 - 46829543
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  46829479 gagaaatgatatttgtacaaccattttgtaacaatttttgtgacaactttctctctcatactcac 46829543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 40854729 - 40854642
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||||  || |||  |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  40854729 tttgagaaatgatatctgtacatccattttctaacaacttttgtgacaattttctctctcatactcacattatatttttactttctct 40854642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 4971290 - 4971373
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||||| ||||  ||| | |||| ||||| |||||||||||| || |||||||||| |||||    
T  4971290 gagaaatgatatttgtacaaccattttgtgacaacttttat-acaactttctctctcatactcacattatattcttactatctct 4971373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 12007257 - 12007193
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  12007257 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcac 12007193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 30941386 - 30941469
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  30941386 gagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 30941469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 42584802 - 42584882
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttacttt 232  Q
    |||||||||||  || |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||    
T  42584802 gagaaatgatatatgtacaaccattttctaacaacttttgtgacaactttctctctcatactcacattatatttttacttt 42584882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 47288082 - 47288162
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttacttt 232  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| |||||||||| |||| |||| |||||||    
T  47288082 gagaaatgatatttgtacaaccattttgtaacaatttttgtgacaactttctctctcatactcgcgttatatttttacttt 47288162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 21617180 - 21617247
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| ||||||||||||    
T  21617180 tttgagaaatgatatttgaacatccattttgtgacaatttttgttacaactttctctctcatactcac 21617247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 3078980 - 3078915
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  3078980 tgagaaatgatatttgtacaatcattttgtaacaacttttgtgacaactttctctctcatactcac 3078915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 44257801 - 44257717
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||  ||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  44257801 gagaaatgatatttgtgcaatcattttctaacaatttttgtgacaactttctctctcatactcacattatatttttactttctct 44257717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 14593826 - 14593892
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||| ||||| |  |||||||| ||||  |||||||||| ||||||| ||||||||||    
T  14593826 ttgagaaatgatatttgaatatccattttgtgacaacttttgttacaactttctatttcatactcac 14593892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 36123533 - 36123447
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||| ||| |||| |||||| ||||||  ||| | |||| ||||| ||||||||| || || |||| |||||||||||    
T  36123533 ttgagaaatgatatttgtacaatcattttataacaacttttatgacaactttctctctcatacttacattatatttttactttctct 36123447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 51887661 - 51887726
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactca 215  Q
    ||||||||||||| |||||||  |||||||| ||||  |||| ||||| ||||| |||||||||||    
T  51887661 ttgagaaatgatatttgaacatccattttgtgacaacttttgctacaactttctctctcatactca 51887726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 2004260 - 2004196
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| ||||||  ||||  |||| |||||||||| |||||||    
T  2004260 gagaaatgatatttgaacaaccattttttaacaacttttgcaacaactttctatctcttactcac 2004196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 37297049 - 37297132
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  37297049 gagaaatgatatttgaacaaccatttttta-caacttttgtgacaattttctctctcatactcacattatctttttactttctct 37297132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 37514203 - 37514139
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||  |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  37514203 gagaaatgatatttgtacatccattttgtaacaacttttgtgacaactttctctctcatactcac 37514139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 42815404 - 42815468
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| ||||  ||||||||||||  ||||| |||| ||||| ||||||||||||    
T  42815404 gagaaatgatatttgtacaactattttgtaacaacttttgtgacaactttctctctcatactcac 42815468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 51255746 - 51255810
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  51255746 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcac 51255810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 52204850 - 52204934
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||||||||  ||||| ||||||  ||||||| || ||||| | |||||||||| |||| ||  ||||||||||    
T  52204850 gagaaatgatatttgaacaattattttttaacaatttttgttataattttctctttcatactcacattgtttttctactttctct 52204934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 56557733 - 56557817
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||||||||  ||||| | ||||  ||||| |||| ||||| |||||||||||| |||| || |||| ||||||    
T  56557733 gagaaatgatatttgaacaacaattttatgacaacttttgtgacaattttctctctcatactcacattgtgtttttaccttctct 56557817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 30535991 - 30536075
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  30535991 gagaaatgatatttgtacaatcattttttaacaatttttgtgacaactttctctctcatactcacattatatttttactttctct 30536075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 35369700 - 35369783
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| |||||||||||||||||| |||| || |||||||||||    
T  35369700 gagaaatgatatttgaacaatcatttttta-caacttttgtgacaactttctatctcatactcacattgtctttttactttctct 35369783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 52714975 - 52714905
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgtt 219  Q
    |||||||||||||| |||||||  |||||| ||||||  ||||| |||| ||||| |||||||||||||||    
T  52714975 tttgagaaatgatatttgaacatccattttataacaacttttgtgacaattttctttctcatactcacgtt 52714905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 649768 - 649852
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  649768 gagaaatgatatttgaacaaccatttttttacaacttttgtgacaactttctctctcatactcacattatctttttactttctct 649852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 12999893 - 12999810
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  12999893 gagaaatgatatttgtacaaccattttctaacaacttttgt-acaactttctctctcatactcacattatatttttactttctct 12999810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 44789218 - 44789150
Alignment:
Q  148 atttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| | ||||||||||    
T  44789218 atttgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctttcatactcac 44789150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 9567032 - 9566949
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctc 235  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| || | || ||||||||||    
T  9567032 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattatgtttttactttctc 9566949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 49931550 - 49931633
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttacttt 232  Q
    |||||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| ||||||| |||| || |||| |||||||    
T  49931550 tttgagaaatgatatttgtacaatcattttttaacaacttttgtgacaactttctctctcatattcacattatatttttacttt 49931633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 37685330 - 37685414
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  37685330 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 37685414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 37700188 - 37700104
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  37700188 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 37700104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 49020476 - 49020391
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||| | |||||||||||| || |||| || ||||||||    
T  49020476 tgagaaatgatatttgtacaaccattttttaacaacttttgtgacaattttttctctcatactcacattatattttttctttctct 49020391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 9987951 - 9988035
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| || ||| | ||||  ||||| |||| ||||| | |||||||||| || |||| |||||||||||    
T  9987951 gagaaatgatatttgaacaaccaatttttgacaacttttgtgacaactttctctttcatactcacattatatttttactttctct 9988035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 21433472 - 21433408
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||| ||||||||    
T  21433472 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctcttatactcac 21433408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 30505411 - 30505324
Alignment:
Q  148 atttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||||| ||| |||| || ||| |||| || ||| | |||||||||| ||||||| ||||| | |||||||| |||||||    
T  30505411 atttgagaaatgatatttgtacaaccaatttctaac-aattttttgacaaatttctctctcatattcacgatatattcttattttctct 30505324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 48983739 - 48983675
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  48983739 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcac 48983675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 49446869 - 49446785
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| | || ||||||||| |||  ||||| |||| ||||| ||||||||| || || |||| |||||||||||    
T  49446869 gagaaatgatatttgtaaaaccattttgtaccaatttttgtgacaactttctctctcatacttacattatatttttactttctct 49446785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 14207332 - 14207265
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||||| ||||||||  ||||||||||||  ||||| |||| ||||| ||||||||||||    
T  14207332 tttgagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctctcatactcac 14207265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 14215080 - 14215013
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||||| ||||||||  ||||||||||||  ||||| |||| ||||| ||||||||||||    
T  14215080 tttgagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctctcatactcac 14215013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 29573429 - 29573363
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  29573429 ttgagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctctcatactcac 29573363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 10811135 - 10811219
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| |||| || |||| ||||||    
T  10811135 gagaaatgatatttgaacaaccattttatgacaacttttgtgacaactttctctctcatactcacattgtgtttttaccttctct 10811219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 26452778 - 26452710
Alignment:
Q  168 acaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||| |||||| ||||||  |||||||||| ||||| |||||||||||| || |||| |||||||||||    
T  26452778 acaaccattttctaacaacttttgttacaactttctctctcatactcacattatatttttactttctct 26452710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 38926628 - 38926711
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  38926628 gagaaatgatatttgaacaaccatttttta-caacgtttgtgacaactttctctctcatactcacattatctttttactttctct 38926711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 48405410 - 48405494
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||||| ||||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  48405410 gagaaatgatatttgtacaaccattttgtgacaacttttgtaacaactttctctctcatactcacattatgtttttactttctct 48405494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 48352994 - 48353080
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||| ||| |||  |||||| ||||||  ||||| |||| ||||| |||||||||||  || |||| |||||||||||    
T  48352994 ttgagaaatgatatttgtacatccattttttaacaacttttgtgacaactttctctctcatactcatattatatttttactttctct 48353080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 26014811 - 26014895
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  26014811 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 26014895  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 41717304 - 41717345
Alignment:
Q  194 acaaatttctatctcatactcacgttgtattcttactttctc 235  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  41717304 acaactttctatctcatactcacgttatattcttactctctc 41717345  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 13712775 - 13712843
Alignment:
Q  168 acaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||| |||||| ||||||  ||||| |||| ||| |||||||| |||||||| |||| |||||||||||    
T  13712775 acaaccattttttaacaacatttgtgacaattttatatctcattctcacgttatatttttactttctct 13712843  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 20548061 - 20547978
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| || ||| || |||  ||||| |||| ||||| ||||||||||||||| | || |||||||||||    
T  20548061 gagaaatgatatttgaacaatcagttttta-caacttttgtgacaattttctctctcatactcacgttatctttttactttctct 20547978  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 24483038 - 24482970
Alignment:
Q  148 atttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||||| |||||||  |||||||| ||||  ||||  |||| ||||| ||||||||||||    
T  24483038 atttgagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcac 24482970  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 26996316 - 26996380
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  ||||| |||||||  ||||| |||| ||||| ||||||||||||    
T  26996316 gagaaatgatatttgaacattcatttagtaacaacttttgtaacaactttctctctcatactcac 26996380  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 27718857 - 27718793
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| | || |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  27718857 gagaaatgatacttgtataatcattttgtaacaacttttgtgacaactttctctctcatactcac 27718793  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 37894314 - 37894250
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| ||||||||||||    
T  37894314 gagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcac 37894250  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 45186623 - 45186539
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||| |||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||| ||||| || |||| |||||||||||    
T  45186623 gagaaaagatatttgtacaaccattttctaacaatttttgtgacaactttctctctcatgctcacattatatttttactttctct 45186539  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 49761257 - 49761174
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| ||||| |||||| || |||| |||||||||||    
T  49761257 gagaaatgatatttgtacaaccattttctaacaatttttgt-acaactttctctctcacactcacattatatttttactttctct 49761174  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 15368894 - 15368833
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatact 213  Q
    ||||||||||| |||||||  |||||||||||||  |||||||||| ||||| |||||||||    
T  15368894 gagaaatgatatttgaacatccattttgtaacaacttttgttacaactttctctctcatact 15368833  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 16368118 - 16368034
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||| ||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  16368118 gagaaatgatatttgtacaaccattttataataatttttgtaacaactttctttctcatactcacattatatttttactttctct 16368034  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 25811910 - 25811826
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  25811910 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 25811826  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 2242093 - 2242029
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  2242093 gagaaatgatatttgaacaatcattttttgacaatttttgtgacaactttctctctcatactcac 2242029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 15318259 - 15318195
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| ||||||| ||||    
T  15318259 gagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatattcac 15318195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 16337994 - 16337910
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| | | |||| |||||| ||| ||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  16337994 gagaaatgatattggtacaaccattttataataacttttgtaacaactttctctctcatactcacattatatttttactttctct 16337910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 17182007 - 17181943
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| || ||||| ||||||  |||||  ||||| |||| ||||||||||||||||||    
T  17182007 gagaaatgatatttaaacaaccatttttgaacaacttttgtaacaactttctatctcatactcac 17181943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 17551450 - 17551386
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  17551450 gagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcac 17551386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 25127904 - 25127820
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| | || ||||| ||| |||||||| || | || |||||||||||    
T  25127904 gagaaatgatatttgtacaaccattttgtaacaacttttgtgaaaactttctctctgatactcacattatgtttttactttctct 25127820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 33421760 - 33421824
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| | ||||||||||    
T  33421760 gagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctttcatactcac 33421824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 8471 - 8541
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgt 221  Q
    |||||||||||| |||||||| |||||| ||||||  ||| | |||| ||||| |||||||||||| ||||    
T  8471 tgagaaatgatatttgaacaatcattttttaacaatttttatgacaactttctctctcatactcacattgt 8541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 223552 - 223486
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||| ||||| |  |||||||| ||||  |||||||||| ||||||| ||||||||||    
T  223552 ttgagaaatgatatttgaatatccattttgtgacaacttttgttacaactttctatttcatactcac 223486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 6591 - 6522
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgt 221  Q
    ||||||||||| |||||||| |||||| ||||||  ||||| |||| ||| | |||||||||||| ||||    
T  6591 gagaaatgatatttgaacaatcattttttaacaacttttgtgacaactttatctctcatactcacattgt 6522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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