View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_high_3 (Length: 405)
Name: NF20485_high_3
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 54974466 - 54974079
Alignment:
| Q |
1 |
tattcatagagttttgcgagatgttacaatgatacatgattagaggaagtagtctatgcagatgttcattttaaaccaaaaagcaaatctcttcttttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||| |
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| T |
54974466 |
tattcatagagttttgcgagatgttacaatgatacatgattagaggaaatagtctatgcagatgttcattttaaaccaaaaggtaaatctcttattttcg |
54974367 |
T |
|
| Q |
101 |
agggttagtccaaaattggaaaaatataccaagtctaaatccataggatattcgataatcattccaattcgaacaaaaaactataaggactatattgtca |
200 |
Q |
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| T |
54974366 |
agggttagtccaaaattggaaaaatatactaagtctaaatccataggatattcgataatcattccaattcgaacaaaaaactataaggactatattgtca |
54974267 |
T |
|
| Q |
201 |
tttaattacacccccttctacttagtgccgtttgtaacaaaactggtggatacaattgtatttggataacgtggcccaatcctccaatgcgtagtgatat |
300 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
54974266 |
tttaattacaccaccttctaattagtgccgtttgtaacaaaactggtggatacaattgtatttggataacgtggcccaatcttcaaatgcgtagtgatat |
54974167 |
T |
|
| Q |
301 |
gatatctatgcatgtatgaaaatctcaactcactctatacactacacaaccttcatgtgtgtgtaggacattgatttcaaacacggagaaga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
54974166 |
gatatctatgcatgtatgaaaatctcaactcactctatacactacacaaccttcat----gtgtaggacattgatttcaaacacggacaaga |
54974079 |
T |
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