View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_high_4 (Length: 401)
Name: NF20485_high_4
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 7832774 - 7832617
Alignment:
| Q |
38 |
aaaatcctaggaaacaaaggagatttaaaagaagttgttaaaagagattagaagtggtcaaaaccaaaggaaacaaaagcaccatcaccgattccttgga |
137 |
Q |
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| T |
7832774 |
aaaatcctaggaaacaaaggagatttaaaagaagttgttaaaagagattagaagtggtcaaaaccaaaggaaacaaaagcaccatcaccgattccttgga |
7832675 |
T |
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| Q |
138 |
tgatatgataatatgagtcttggttggatcaattcaattcaaatgagaaggaataaat |
195 |
Q |
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| T |
7832674 |
tgatatgataatatgagtcttggttggatcaattcaattcaaatgagaaggaataaat |
7832617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 271 - 386
Target Start/End: Complemental strand, 7832569 - 7832454
Alignment:
| Q |
271 |
atggaatgaaagaacacaaaccatgaggcgacagtgactggagccgtaggagataacaatggagaagcttgcgcagaggaagaagactgaacagtttggc |
370 |
Q |
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| T |
7832569 |
atggaatgaaagaacacaaaccatgaggcgacagtgactggagccgaaggagataacaatggagaagcttgcgcagaggaagaagactgaacagtttggc |
7832470 |
T |
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| Q |
371 |
ctatgagagaacaata |
386 |
Q |
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| T |
7832469 |
ctatgagagaacaata |
7832454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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