View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_high_5 (Length: 394)
Name: NF20485_high_5
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 33 - 327
Target Start/End: Complemental strand, 7646665 - 7646370
Alignment:
| Q |
33 |
gatgcttcatacaataaagactgttttaacctctccacaagcttcatttccacgttcactctcttcaaacctttgtcgggaaacttccaccgttagattt |
132 |
Q |
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| T |
7646665 |
gatgcttcatacaataaagactgttttaacctctccacaaacttcatttccacgttcactctcttcaaacctttgtcgggaaacttccaccgttagattt |
7646566 |
T |
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| Q |
133 |
tgctccaaagctgattcttcacataagatggacaaggctcaacaaaagtctagtagtgagaaaaaggaaactactgaacatgggtgagctcaaatcacgt |
232 |
Q |
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| T |
7646565 |
tgctccaaagctgattctgcacataagatggacaaggctcaacaaaagtctagtagtgagaaaaaggaaactactgaacatgggtgagctcaaatcacgt |
7646466 |
T |
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| Q |
233 |
aatttataatcttcatgtgattgatttatcagtttactatcctattagggaatgg-tttatcgtgtttgtttttaacttcttcaatttctcttatt |
327 |
Q |
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| T |
7646465 |
aatttataatcttcatgtgattgatttatcagtttactatcctattagggaatggttttatcgtgtttgtttttaacttcttcaatttctcttatt |
7646370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 7646351 - 7646307
Alignment:
| Q |
339 |
caaatttgctatcatgatttacaacatgcactaactatctgtgct |
383 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
7646351 |
caaattcgctatcatgatttacaacatgcactaactatttgtgct |
7646307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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