View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_high_6 (Length: 357)
Name: NF20485_high_6
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 31105922 - 31106265
Alignment:
| Q |
1 |
ctagaaagttgttataaatatagagttatattgagttttcttcgccccgaacatccctagtctattgattgtacttggggcttgggtagttgtgtgtctt |
100 |
Q |
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| T |
31105922 |
ctagaaagttgttataaatatagagttatattgagttttcttcaccccgaacatccctagtctactggttgtacttggggcttgggtagttgtgtgtctt |
31106021 |
T |
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| Q |
101 |
gagagagtttacaacttttccgtgcaaaatcaaattcattttatctaactaacatttgtgaaatagaaaatgtcatttgcacctaactaggctgtgttaa |
200 |
Q |
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| T |
31106022 |
gagagagtttacaacttttccgtgcaaaatcaaactcattttatctaactaacatttgtgaaatagaaaatgtcatttgcatctaactaggctgtgttaa |
31106121 |
T |
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| Q |
201 |
aggatataataatgtgatctaaaaaatgtcattctatccaaaaatttcttttatcattaaaatgaacagcatttcattttgacatataatgttgatattg |
300 |
Q |
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| T |
31106122 |
aggatataatgatgtgatctaaaaaatgtaattctatccaaaaatttcttttatcattaaaatgaacagcatttcattttgacatataatgttgatattg |
31106221 |
T |
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| Q |
301 |
aatggttcaaaataatttcctctaatggtgctgacaactagctt |
344 |
Q |
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| T |
31106222 |
aatggttcaaaataatttactctaatggtgctgacaactagctt |
31106265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 31107828 - 31107895
Alignment:
| Q |
140 |
tttatctaactaacatttgtgaaatagaaaatgtcatttgcacctaactaggctgtgttaaaggatataata |
211 |
Q |
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| T |
31107828 |
tttatctaactaacatttgtgcaatagaaaatgtcatctgcac----agaggctgtgttaaaggatataata |
31107895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 3511763 - 3511677
Alignment:
| Q |
22 |
agagttatattgagttttcttcgccccgaacatccctagtctattgattgtacttggggcttgggtagttgtgtgtcttgagagagttt |
110 |
Q |
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||||||||||||||||||| || || | |||| | ||||||| ||| |||| |||||| ||||||||||||||||||||||||||||| |
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| T |
3511763 |
agagttatattgagttttcatcaccac-aacaactctagtcttttgggtgta-ttggggattgggtagttgtgtgtcttgagagagttt |
3511677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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