View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_low_1 (Length: 970)
Name: NF20485_low_1
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_low_1 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold1636 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 856; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 856; E-Value: 0
Query Start/End: Original strand, 13 - 970
Target Start/End: Complemental strand, 9938983 - 9938026
Alignment:
| Q |
13 |
aatatcgggagaaagaaatatgttcgagctgcaaatttgtttgtaataca-agttcaaaaatatcctcccctcaattacattttccgaataaagattaca |
111 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9938983 |
aatatcgggagaaagaaatatgtttgagctgcaaatttgtttgtaatacgcagtccaaaaatatcctcccctcaattacatttttcgaataaagattaca |
9938884 |
T |
|
| Q |
112 |
tgggaatagactggttagaggacaactcaatggtcgaccaagaaagttacatacatcattttcagcacgcctataagcaactaagacatccagactcaac |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9938883 |
tgggaatagaccagttagaggacaactcaatggtcgaccaagaaagttacatacatcattttcagcacgcctataagcaactaaggcatccagactcaac |
9938784 |
T |
|
| Q |
212 |
tttgttaccatattgagtgcacagttatactatgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatataga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9938783 |
tttgttaccatattgagtgcacagttatactatgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatataga |
9938684 |
T |
|
| Q |
312 |
tgtgagataccactttctcagagatcttacaaaagaaggagtggttgagagtactcaagaacagattgcagatattatgacttggcctttgaagctggaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
9938683 |
tgtgagataccactttctcagagatcttacagaagaaggagtgg-tgagagtactcaggaacagattgcagatattatgacttggcttttgaagctggaa |
9938585 |
T |
|
| Q |
412 |
accttttgcaaattgagggagaaactaggcatctgtgaaatgtcttaattctttgtgatatatgtttgtaaactaaatttgtttgtcataaggttcagtt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9938584 |
accttttgcaaattgagggagaaactaggcatctgtgaaatgtcttaattctttgtgatatatgtctgtaaactaaatttgtttgtcataaggttcagtt |
9938485 |
T |
|
| Q |
512 |
taggagagtgattgttaggatatgcttgttacaagttagttagaagttagttgtggaagttacttagctctcaagtaactcagtttgttgtgtatctcag |
611 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9938484 |
taggagagtaattgttaggatatgcttgttacaagttagttagaagttagttgtggaagttacttagctctcaagtaactcagtttgttgtgta-ctcag |
9938386 |
T |
|
| Q |
612 |
tttgctatatataggacctttgtatcaaaccatgattcaataatgagaatacacttttacataacacaacactcgctccagcagatatcg-aacctatga |
710 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
9938385 |
tttgctatatataggagctttgtatcaaaccataattcaataatgagaatacacttttacataacacaacactcgctccagcagatatcgaaacctatga |
9938286 |
T |
|
| Q |
711 |
ggtctatatctgattcagtttgagtataagctaatgttctgaaatgagcatgtttgacggtgatcatcgaactggtaatttctgagtgttacttatatat |
810 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9938285 |
ggtccatatctgattcagtctgagtataagctaatgttctgaaatgagcatgtttgacggtgatcatcgaactggtaatttctgagtgttacttatacat |
9938186 |
T |
|
| Q |
811 |
atttcagatttataatatgaaacatgttacttttgtttggactattttaaaattcaaaaagttttgaaacggaaattacaataatttaatgtcaaaacac |
910 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9938185 |
atttcagatttataatatgaaacatgttacttttgtttggactattttaaaattcaaaaagttttgaaacggaaattacaataatttaatgtcaaaacac |
9938086 |
T |
|
| Q |
911 |
atggactttgagtttttaaatattccgattataaatccacttgggttggcctaatggtat |
970 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
9938085 |
atggactttgagtttttaaatattccgattataaatccacttgggttggtctaatggtat |
9938026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 40609935 - 40609865
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgt |
314 |
Q |
| |
|
||||||||||| || || || || || ||||| || ||||| |||||||| |||||||||||||||||||| |
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|
| T |
40609935 |
tgtgataatagctcatcaataaagctatctaagaatccagtcatgcatggtagatgcaaacatatagatgt |
40609865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 17536385 - 17536300
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttct |
329 |
Q |
| |
|
|||||||||||||| |||||||||| || || |||||||| | ||||||||| | ||||| ||||||||| |||| || ||||| |
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| T |
17536385 |
tgtgataatagttcaactatcaaactctccaagaacccagttttacatgggagaagtaaacacatagatgtgcgatatcattttct |
17536300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 30288244 - 30288366
Alignment:
| Q |
555 |
aagttagttgtggaagttacttagctctcaagtaactcag-tttgttgtgtatctcagtttgctatatataggacctttgtatcaaaccatgattcaata |
653 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| | ||||| |||||||| |||||||| |
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|
| T |
30288244 |
aagttagttttagaagttacttagcttgcaagtaactcagttttgtagtgtatctcagtttgctatatatagcagtcttgtaccaaaccat-attcaata |
30288342 |
T |
|
| Q |
654 |
atgagaatacacttttacataaca |
677 |
Q |
| |
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||||||||| | |||||| ||||| |
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| T |
30288343 |
atgagaataaatttttacctaaca |
30288366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 45825319 - 45825234
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttct |
329 |
Q |
| |
|
|||||||||||||| |||||||||| || || |||||||| | ||||||||| | ||||| ||||||||| |||| || ||||| |
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| T |
45825319 |
tgtgataatagttcaactatcaaactctccaagaacccagttttacatgggagaagtaaacacatagatgtgcgatatcattttct |
45825234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 244 - 361
Target Start/End: Complemental strand, 30967216 - 30967099
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttctcagagatcttacaa |
343 |
Q |
| |
|
|||||||||||||| ||||| |||||| | ||||| || || ||||||||| || |||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
30967216 |
tgtgataatagttcatctattaaactgcccaaaaatcctgtattgcatgggaagtgtaaacatatagatgttagataccactttctcagggatcttacaa |
30967117 |
T |
|
| Q |
344 |
aagaaggagtggttgaga |
361 |
Q |
| |
|
|| ||||| | ||||||| |
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| T |
30967116 |
aataaggaatagttgaga |
30967099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 14178835 - 14178910
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagat |
319 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||||| |||||||||| |||||||| || ||||||||||||| |
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|
| T |
14178835 |
tgtgataatagttcctctataaagttgtctacgaaccctgtgatgcatgtaagatgcaagcacatagatgtgagat |
14178910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 244 - 347
Target Start/End: Original strand, 42971834 - 42971937
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttctcagagatcttacaa |
343 |
Q |
| |
|
|||||||||||||| || || || ||||| ||||| || | |||||||||||||||||||| || ||||| |||||||| ||||| || || ||||| | |
|
|
| T |
42971834 |
tgtgataatagttcttccattaagctgtcaaaaaatcctatcatgcatgggagatgcaaacacattgatgttagataccattttctaagggaccttacta |
42971933 |
T |
|
| Q |
344 |
aaga |
347 |
Q |
| |
|
|||| |
|
|
| T |
42971934 |
aaga |
42971937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 47144730 - 47144776
Alignment:
| Q |
271 |
tctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgag |
317 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
47144730 |
tctaagaatccagttatgcatgggagatgcaagcatatagatgtgag |
47144776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1636 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1636
Description:
Target: scaffold1636; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 610 - 671
Alignment:
| Q |
287 |
tgcatgggagatgcaaacatatagatgtgagataccac-tttctcagagatcttacaaaaga |
347 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||| ||| | || |||||||||||||| |
|
|
| T |
610 |
tgcatggaagatgcaaacatatagatgtgaggtatcacttttttgagggatcttacaaaaga |
671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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