View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_low_10 (Length: 296)
Name: NF20485_low_10
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_low_10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 59 - 296
Target Start/End: Original strand, 11157341 - 11157578
Alignment:
| Q |
59 |
atcttcaattatataaattatcaatacgaaaatctttgtgtttgaatgaatttttgtttgtttgataatgatgaaaaaatatagtgtggattcgatgatg |
158 |
Q |
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| T |
11157341 |
atcttcaattatataaattatcaatacgaaaatctttgtgtttgaatgaatttttgtttgtttgataatgatgaaaaaatatagtgtggattcgatgatg |
11157440 |
T |
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| Q |
159 |
gaaactgatgttgttgatattgataacaacaaacctgcgattgaaaattttgaaatgatggtgtttgatgataataaggtgcttaataataatggtggca |
258 |
Q |
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| T |
11157441 |
gaaactgatgttgttgatattgataacaacaaacctgcgattgaaaattttgaaatgatggtgtttgatgataataaggtggttaataataatggtggca |
11157540 |
T |
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| Q |
259 |
gcaacaaaagtttgaagagaatctcgaatgggggcggc |
296 |
Q |
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| T |
11157541 |
gcaacaaaggtttgaagagaaactggaatgggggcggc |
11157578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 295
Target Start/End: Original strand, 11164323 - 11164516
Alignment:
| Q |
98 |
gtttgaatgaatttttgtttgtttgataatgatgaaaaaatatagtgtggattcgatgatggaaactgatgttgttgatattgataacaacaaacctgcg |
197 |
Q |
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| T |
11164323 |
gtttgaatgaatatttatttggttgataatgatggaaaca-atagtgtggcttcgatgatggaaactgaagttgttgatgttgataacaa---acctggg |
11164418 |
T |
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| Q |
198 |
attgaaaattttgaaatgatggtgtttgatgataataaggtgcttaataataatggtggcagcaacaaaagtttgaagagaatctcgaatgggggcgg |
295 |
Q |
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| T |
11164419 |
attgaaacttttgatatgatggtgtttgacgataataaggtggttaataataatggtggcagcagcaaaggtttgaagagaaactcgaatgggggcgg |
11164516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 294
Target Start/End: Original strand, 11177124 - 11177333
Alignment:
| Q |
100 |
ttgaatgaatttttgtttgtttgataatgatgaaaaa-atatagtgtggattcgatgatggaaactga---------tgttgttgatattgataacaaca |
189 |
Q |
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| T |
11177124 |
ttgaatgaatttt-gtttggttgatgatgatgaaaaataaacagtgtggcttcgatgatggaaactgaagctgaaggtgttgttgatattgataatag-- |
11177220 |
T |
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| Q |
190 |
aacctgcgattgaaaattttgaaatgatggtgtttgatgataat---------aaggtgcttaataataatggtggcagcaacaaaagtttgaagagaat |
280 |
Q |
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| T |
11177221 |
-acctgcgatagaaaattttgatatgatggtgcttgatgataatcaaaaaaagaaggtagttaataataatagtggcggcaacaaaggattgaagagaaa |
11177319 |
T |
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| Q |
281 |
ctcgaatgggggcg |
294 |
Q |
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| T |
11177320 |
tttgaatgggggcg |
11177333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 4703715 - 4703664
Alignment:
| Q |
241 |
ttaataataatggtggcagcaacaaaagtttgaagagaatctcgaatggggg |
292 |
Q |
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| T |
4703715 |
ttaataataatggtggctgcaacaaaggtttgaagagaaactcaaatggggg |
4703664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 4703833 - 4703790
Alignment:
| Q |
141 |
agtgtggattcgatgatggaaactgatgttgttgatattgataa |
184 |
Q |
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| T |
4703833 |
agtgtggcttcgatgatggaaactgacattgttgatattgataa |
4703790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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