View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_low_13 (Length: 272)
Name: NF20485_low_13
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_low_13 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7336251 - 7336019
Alignment:
| Q |
1 |
ttatacggttgcttcttttttgcttcaatttaaaataaatgaagagtaaaagttaattggtgattttgatgctgagattgatcttcttaaaatggctgta |
100 |
Q |
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| T |
7336251 |
ttatacggttgcttcttttttgcttcaatttaaaataaatgaagagtaaaagttaattggtgattttgatgctgagattgatcttcttaaaatggttgta |
7336152 |
T |
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| Q |
101 |
aaagaatggattagttagctgaatcgaatgcgaacaactgaacaaagaatacttattgatacattgtcttctttctattacaactgcagaatcttttctt |
200 |
Q |
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| T |
7336151 |
aaagaatggattagttagctgaatcgaatgcgaacaactgaacaaagaatacttcttgatacattgtcttctttctattacaactgcagaatcttttctt |
7336052 |
T |
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| Q |
201 |
gttatattttaatgtgaattgttagattttgta |
233 |
Q |
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| T |
7336051 |
gttatattttaatgtgaattgttagattttgta |
7336019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 7352874 - 7352814
Alignment:
| Q |
90 |
aaatggctgtaaaagaatggattagttagctgaatcgaatgcgaacaactgaacaaagaat |
150 |
Q |
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| T |
7352874 |
aaatggttgtaaatgaatggattagttagttgaattgaatctgaacaactgaacaaagaat |
7352814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 7322814 - 7322775
Alignment:
| Q |
7 |
ggttgcttcttttttgcttcaatttaaaataaatgaagagt |
47 |
Q |
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| T |
7322814 |
ggttgcttcttttt-gcttcaatttaaaatgaatgaagagt |
7322775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 55316 - 55128
Alignment:
| Q |
42 |
aagagtaaaagttaattggtgattttgatgctgagattgatcttcttaaaatggctgtaaaagaatggattagttagctgaatcgaatgcgaacaactga |
141 |
Q |
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| T |
55316 |
aagagtacaagttaattagcgattttgatgttgagattgatcttcttcaaatggttgtaaatggaggggttagttagttgaattgaatgtgaacaactga |
55217 |
T |
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| Q |
142 |
acaaagaatacttattgatacattgtcttctttctattacaactgcagaatcttttcttgttatattttaatgtgaattgttagatttt |
230 |
Q |
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| T |
55216 |
acaaagaatgcttcttgatacattgtcttattgctattggaactccagaaccgattttggctatattttaatgtgaattgttagatttt |
55128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 230
Target Start/End: Original strand, 40917779 - 40917967
Alignment:
| Q |
42 |
aagagtaaaagttaattggtgattttgatgctgagattgatcttcttaaaatggctgtaaaagaatggattagttagctgaatcgaatgcgaacaactga |
141 |
Q |
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||||||| ||||||||| | |||||||||| |||||||||||||||| |||||| |||||| | | || |||||||| ||||| ||||| |||||||||| |
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| T |
40917779 |
aagagtacaagttaattagcgattttgatgttgagattgatcttcttcaaatggttgtaaatggaggggttagttagttgaattgaatgtgaacaactga |
40917878 |
T |
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| Q |
142 |
acaaagaatacttattgatacattgtcttctttctattacaactgcagaatcttttcttgttatattttaatgtgaattgttagatttt |
230 |
Q |
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| T |
40917879 |
acaaagaatgcttcttgatacattgtcttattgctattggaactccagaaccgattttggctatattttaatgtgaattgttagatttt |
40917967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 18499361 - 18499263
Alignment:
| Q |
42 |
aagagtaaaagttaattggtgattttgatgctgagattgatc-ttcttaaaatggctgtaaaagaatggattagttagctgaatcgaatgcgaacaact |
139 |
Q |
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| T |
18499361 |
aagagtagaagttaattagcgattttgatgttgagattgatctttcttcaaatggttgtaaatggaggggttagttagttgaattgaatgtgaacaact |
18499263 |
T |
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