View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20485_low_14 (Length: 264)

Name: NF20485_low_14
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20485_low_14
NF20485_low_14
[»] chr6 (1 HSPs)
chr6 (11-236)||(4899330-4899559)
[»] chr5 (4 HSPs)
chr5 (205-252)||(38492347-38492394)
chr5 (208-262)||(8401995-8402049)
chr5 (208-264)||(8402124-8402180)
chr5 (208-264)||(42042368-42042424)
[»] chr4 (2 HSPs)
chr4 (208-262)||(23564550-23564604)
chr4 (206-264)||(36165881-36165939)
[»] chr8 (4 HSPs)
chr8 (216-264)||(30525451-30525499)
chr8 (208-250)||(42160473-42160515)
chr8 (208-264)||(12704279-12704334)
chr8 (208-252)||(42160533-42160577)
[»] chr3 (4 HSPs)
chr3 (208-262)||(30135503-30135557)
chr3 (208-262)||(30141632-30141686)
chr3 (208-262)||(30145054-30145108)
chr3 (208-257)||(50196925-50196974)
[»] chr1 (2 HSPs)
chr1 (208-262)||(3371665-3371719)
chr1 (208-252)||(3583748-3583792)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 4899330 - 4899559
Alignment:
Q  11 ttatactcaatttttcaaataaaatctacatggtacacctcatacataagaattaagattgatcctcttcaaaccttttgacattcaaattaagta--at 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||    
T  4899330 ttatactcaatttttcaaataaaatctacatggtacacctcatacataagaattaagattgatcctcttcaaaccttttgatattcaaattaagtaagat 4899429  T
Q  109 ataagatgatttggtgatttagaagagaaacatagaagtgatgaggagatggtgaattcaactctttcatgcactaacaaaataacagctacta--cttt 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  4899430 ataagatgatttggtgatctagaagagaaacatagaagtgatgaggagatggtgaattcaactctttcatgcactaacaaaataacagctactatttttt 4899529  T
Q  207 attaaataagtttggatctcatctcaaaag 236  Q
     |||||||||||||||||||||||||||||    
T  4899530 gttaaataagtttggatctcatctcaaaag 4899559  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 38492347 - 38492394
Alignment:
Q  205 ttattaaataagtttggatctcatctcaaaagttatctcaaaagatga 252  Q
    |||||||||||| || |||||||||||||||||||||| |||||||||    
T  38492347 ttattaaataagcttagatctcatctcaaaagttatcttaaaagatga 38492394  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 8401995 - 8402049
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaa 262  Q
    |||||||||||||||||||||  ||||||||| |||||| || || |||||||||    
T  8401995 ttaaataagtttggatctcattccaaaagttagctcaaaggaggagggtactcaa 8402049  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 8402124 - 8402180
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaaac 264  Q
    |||||||| ||||||| ||||| ||||||||| |||||| || || |||||||||||    
T  8402124 ttaaataaatttggatttcatcccaaaagttagctcaaaggaggagggtactcaaac 8402180  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 42042424 - 42042368
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaaac 264  Q
    |||||||||||||||||||||||||||| ||   ||||| ||||| |||| ||||||    
T  42042424 ttaaataagtttggatctcatctcaaaaattgattcaaaggatgagggtattcaaac 42042368  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 23564550 - 23564604
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaa 262  Q
    ||||||| |||||||||||||| ||||||||| |||||| ||||| |||||||||    
T  23564550 ttaaataggtttggatctcatcccaaaagttagctcaaaggatgagggtactcaa 23564604  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 36165881 - 36165939
Alignment:
Q  206 tattaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaaac 264  Q
    |||||||| ||||||||||||||| ||||||||| || ||| ||||| ||| |||||||    
T  36165881 tattaaatgagtttggatctcatcgcaaaagttagcttaaaggatgagggtgctcaaac 36165939  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 30525499 - 30525451
Alignment:
Q  216 gtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaaac 264  Q
    ||||||||||||||  ||||| || ||||||||||||||||||||||||    
T  30525499 gtttggatctcatccaaaaaggtagctcaaaagatgaaggtactcaaac 30525451  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 42160515 - 42160473
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagat 250  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||    
T  42160515 ttaaatgagtttggatctcatcccaaaagttagctcaaaagat 42160473  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 12704334 - 12704279
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaaac 264  Q
    ||||||| |||||||||| ||| |||||| || | ||||||||||||||||||||||    
T  12704334 ttaaataggtttggatcttatc-caaaagctagcacaaaagatgaaggtactcaaac 12704279  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 42160577 - 42160533
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatga 252  Q
    ||||||||||||||||||||||  |||||||| ||| ||||||||    
T  42160577 ttaaataagtttggatctcatcctaaaagttagctcgaaagatga 42160533  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 30135503 - 30135557
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaa 262  Q
    ||||||| | |||||||||||| ||||||||| |||||| ||||| |||||||||    
T  30135503 ttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaa 30135557  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 30141632 - 30141686
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaa 262  Q
    ||||||| | |||||||||||| ||||||||| |||||| ||||| |||||||||    
T  30141632 ttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaa 30141686  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 30145054 - 30145108
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaa 262  Q
    ||||||| | |||||||||||| ||||||||| |||||| ||||| |||||||||    
T  30145054 ttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaa 30145108  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 50196974 - 50196925
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggta 257  Q
    ||||||| |||||||||||||| ||||||||| |||||| ||||| ||||    
T  50196974 ttaaataggtttggatctcatcccaaaagttagctcaaaggatgagggta 50196925  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 3371719 - 3371665
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatgaaggtactcaa 262  Q
    |||||| || |||||||||||| |||||| || |||||||||||| |||||||||    
T  3371719 ttaaatgagcttggatctcatcccaaaagctacctcaaaagatgagggtactcaa 3371665  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 3583748 - 3583792
Alignment:
Q  208 ttaaataagtttggatctcatctcaaaagttatctcaaaagatga 252  Q
    |||||||| |||||||||||||||| |||||| ||||| ||||||    
T  3583748 ttaaataactttggatctcatctcataagttaactcaagagatga 3583792  T

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