View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_low_16 (Length: 254)
Name: NF20485_low_16
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 11156803 - 11157027
Alignment:
| Q |
15 |
gacgaaaggagagattagaaaacaatgcaactttgttaactcaaattctgcagaactagatttagccactatagcctccatagtagaatcattagaggat |
114 |
Q |
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| T |
11156803 |
gacgaaaggagagattagaaaacaatgcaactttgttaactcaaattctgcagaactagatttagccactatagcctccatagtagaatcattagaggat |
11156902 |
T |
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| Q |
115 |
ggtattgctagtgtaatataaataaattagcgtcaatgcacttattgaaatcttgtgactagatgccactaataaataagttataactaggcacatttca |
214 |
Q |
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| T |
11156903 |
ggtattgctagtgtaatataaataaattagcgtcaatgcacttattgaaatcttgtgactagatgccactaataaataagttataactaggcacatttca |
11157002 |
T |
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| Q |
215 |
tgtcacttgaaatcctatgctttgt |
239 |
Q |
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| T |
11157003 |
tgtcacttgaaatcctatgctttgt |
11157027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 11150140 - 11150199
Alignment:
| Q |
20 |
aaggagagattagaaaacaatgcaactttgttaactcaaattctgcagaactagatttag |
79 |
Q |
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| T |
11150140 |
aaggagagattagaaaacaatgcaactttgttaattcaaaatcagtagaactaggtttag |
11150199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 11146171 - 11146224
Alignment:
| Q |
20 |
aaggagagattagaaaacaatgcaactttgttaactcaaattctgcagaactag |
73 |
Q |
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| T |
11146171 |
aaggagagattagaaaacaatgcaactttgttaattcaaaatcagtagaactag |
11146224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 11137865 - 11137905
Alignment:
| Q |
19 |
aaaggagagattagaaaacaatgcaactttgttaactcaaa |
59 |
Q |
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| T |
11137865 |
aaaggagagattagaaaacattgcaattttgttaattcaaa |
11137905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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