View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20485_low_18 (Length: 249)

Name: NF20485_low_18
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20485_low_18
NF20485_low_18
[»] chr8 (15 HSPs)
chr8 (23-236)||(35152886-35153099)
chr8 (150-236)||(25830233-25830319)
chr8 (149-236)||(43397778-43397864)
chr8 (142-216)||(3946230-3946304)
chr8 (151-216)||(34718114-34718179)
chr8 (152-216)||(33100476-33100540)
chr8 (152-236)||(35067160-35067244)
chr8 (152-236)||(43285950-43286034)
chr8 (149-236)||(12284257-12284344)
chr8 (151-216)||(26026895-26026960)
chr8 (151-216)||(29991411-29991476)
chr8 (152-237)||(42619963-42620048)
chr8 (152-216)||(5277711-5277775)
chr8 (152-216)||(10644809-10644873)
chr8 (152-236)||(43715875-43715958)
[»] chr5 (13 HSPs)
chr5 (151-236)||(21922132-21922217)
chr5 (151-236)||(22098254-22098339)
chr5 (152-236)||(14011317-14011401)
chr5 (152-236)||(24468273-24468357)
chr5 (152-236)||(18660759-18660842)
chr5 (152-216)||(18695318-18695382)
chr5 (152-232)||(27546063-27546143)
chr5 (150-216)||(43441736-43441802)
chr5 (152-221)||(17097804-17097873)
chr5 (151-236)||(28306120-28306204)
chr5 (152-216)||(8920078-8920142)
chr5 (150-234)||(16690497-16690581)
chr5 (152-236)||(22649649-22649732)
[»] chr2 (17 HSPs)
chr2 (151-236)||(12784386-12784471)
chr2 (152-216)||(18723594-18723658)
chr2 (152-236)||(38821366-38821450)
chr2 (155-234)||(26481079-26481158)
chr2 (155-237)||(45259271-45259353)
chr2 (154-215)||(14233727-14233788)
chr2 (152-216)||(2841834-2841898)
chr2 (152-216)||(5031923-5031987)
chr2 (152-236)||(6336252-6336336)
chr2 (152-236)||(9207590-9207673)
chr2 (152-236)||(18254197-18254280)
chr2 (188-236)||(33737321-33737369)
chr2 (152-216)||(36802896-36802960)
chr2 (152-216)||(38560678-38560742)
chr2 (152-216)||(39449124-39449188)
chr2 (152-236)||(41042254-41042337)
chr2 (152-216)||(44484664-44484727)
[»] chr7 (10 HSPs)
chr7 (152-236)||(43159562-43159646)
chr7 (152-234)||(47448826-47448908)
chr7 (152-236)||(41018663-41018747)
chr7 (152-236)||(44895560-44895643)
chr7 (152-216)||(46829479-46829543)
chr7 (149-236)||(40854642-40854729)
chr7 (152-236)||(4971290-4971373)
chr7 (152-216)||(12007193-12007257)
chr7 (152-236)||(30941386-30941469)
chr7 (152-232)||(42584802-42584882)
[»] chr4 (14 HSPs)
chr4 (152-232)||(47288082-47288162)
chr4 (149-216)||(21617180-21617247)
chr4 (151-216)||(3078915-3078980)
chr4 (152-236)||(44257717-44257801)
chr4 (150-216)||(14593826-14593892)
chr4 (150-236)||(36123447-36123533)
chr4 (150-215)||(51887661-51887726)
chr4 (152-216)||(2004196-2004260)
chr4 (152-236)||(37297049-37297132)
chr4 (152-216)||(37514139-37514203)
chr4 (152-216)||(42815404-42815468)
chr4 (152-216)||(51255746-51255810)
chr4 (152-236)||(52204850-52204934)
chr4 (152-236)||(56557733-56557817)
[»] chr1 (16 HSPs)
chr1 (152-236)||(30535991-30536075)
chr1 (152-236)||(35369700-35369783)
chr1 (149-219)||(52714905-52714975)
chr1 (152-236)||(649768-649852)
chr1 (152-236)||(12999810-12999893)
chr1 (148-216)||(44789150-44789218)
chr1 (152-235)||(9566949-9567032)
chr1 (149-232)||(49931550-49931633)
chr1 (151-236)||(37685330-37685414)
chr1 (151-236)||(37700104-37700188)
chr1 (151-236)||(49020391-49020476)
chr1 (152-236)||(9987951-9988035)
chr1 (152-216)||(21433408-21433472)
chr1 (148-236)||(30505324-30505411)
chr1 (152-216)||(48983675-48983739)
chr1 (152-236)||(49446785-49446869)
[»] chr3 (18 HSPs)
chr3 (149-216)||(14207265-14207332)
chr3 (149-216)||(14215013-14215080)
chr3 (150-216)||(29573363-29573429)
chr3 (152-236)||(10811135-10811219)
chr3 (168-236)||(26452710-26452778)
chr3 (152-236)||(38926628-38926711)
chr3 (152-236)||(48405410-48405494)
chr3 (150-236)||(48352994-48353080)
chr3 (151-236)||(26014811-26014895)
chr3 (194-235)||(41717304-41717345)
chr3 (168-236)||(13712775-13712843)
chr3 (152-236)||(20547978-20548061)
chr3 (148-216)||(24482970-24483038)
chr3 (152-216)||(26996316-26996380)
chr3 (152-216)||(27718793-27718857)
chr3 (152-216)||(37894250-37894314)
chr3 (152-236)||(45186539-45186623)
chr3 (152-236)||(49761174-49761257)
[»] chr6 (10 HSPs)
chr6 (152-213)||(15368833-15368894)
chr6 (152-236)||(16368034-16368118)
chr6 (151-236)||(25811826-25811910)
chr6 (152-216)||(2242029-2242093)
chr6 (152-216)||(15318195-15318259)
chr6 (152-236)||(16337910-16337994)
chr6 (152-216)||(17181943-17182007)
chr6 (152-216)||(17551386-17551450)
chr6 (152-236)||(25127820-25127904)
chr6 (152-216)||(33421760-33421824)
[»] scaffold0201 (1 HSPs)
scaffold0201 (151-221)||(8471-8541)
[»] scaffold0005 (1 HSPs)
scaffold0005 (150-216)||(223486-223552)
[»] scaffold0432 (1 HSPs)
scaffold0432 (152-221)||(6522-6591)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 35152886 - 35153099
Alignment:
Q  23 caacattgtattagcaaattaggatggtaacaacctgcataataagctaatgcgaatgataaacttttacattctcttgtcattatttatttattggcga 122  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35152886 caacattgtattagcaaattaggatggtaacaacctgcacaataagctaatgcgaatgataaacttttacattctcttgtcattatttatttattggcga 35152985  T
Q  123 attttcattgtaccaattgttattgatttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgta 222  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||  |||||||||| ||| ||||||||||||||||||||    
T  35152986 attttcattgtaccaattgttatttatttgagaaatgatatttgaacaatcattttgtaacaatttttgttacaactttttatctcatactcacgttgta 35153085  T
Q  223 ttcttactttctct 236  Q
    ||||||||||||||    
T  35153086 ttcttactttctct 35153099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 25830319 - 25830233
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  25830319 ttgagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcacattatatttttactttctct 25830233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 43397778 - 43397864
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||||| |||||||| |||||| || |||  |||||||||| ||||| |||||||||||| || | || |||||||||||    
T  43397778 tttgagaaatgatatttgaacaaccatttttta-caacttttgttacaactttctctctcatactcacattatttttttactttctct 43397864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 3946230 - 3946304
Alignment:
Q  142 ttattgatttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||| ||||||||||| |||||||  |||||||| ||||  ||||| |||| ||||| ||||||||||||    
T  3946230 ttattgattagagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactcac 3946304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 34718114 - 34718179
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| ||||||||||||    
T  34718114 tgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatactcac 34718179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 33100540 - 33100476
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| ||||||  ||||| |||| ||||| ||||||||||||    
T  33100540 gagaaatgatatttgaacaaccattttataacaacttttgtgacaactttctctctcatactcac 33100476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 35067160 - 35067244
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||  ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  35067160 gagaaatgatatttgtacaaccatttcttaacaacttttgtgacaactttctctctcatactcacattatatttttactttctct 35067244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 43286034 - 43285950
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||| ||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  43286034 gagaaatgatatttggacaaccattttctaataacttttgtgacaactttctctctcatactcacattatatttttactttctct 43285950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 12284344 - 12284257
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||||| |||||||| ||||||   |||| |||||| |||| ||||| |||||||||||  || | || |||||||||||    
T  12284344 tttgagaaatgatatttgaacaaccatttttggacaacgtttgtgacaactttctctctcatactcatattttgtttttactttctct 12284257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 26026895 - 26026960
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  26026895 tgagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctttctcatactcac 26026960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 29991411 - 29991476
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| | ||||||||||    
T  29991411 tgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctttcatactcac 29991476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 42620048 - 42619963
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctcta 237  Q
    ||||||||||| ||| |||  |||||| ||||||  ||||| |||||||||| ||||||| ||| ||| |||| ||||| ||||||    
T  42620048 gagaaatgatatttgtacatccattttctaacaacttttgtgacaaatttctctctcatattcaagttatatttttactctctcta 42619963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 5277775 - 5277711
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||| ||||| ||||| ||||||||||||    
T  5277775 gagaaatgatatttgaacatccattttgtgacaacctttgctacaattttctctctcatactcac 5277711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 10644873 - 10644809
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||| ||||    
T  10644873 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctctcataatcac 10644809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 43715875 - 43715958
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||| ||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  43715875 gagaaatgatatttgtacaaccattttctaa-aacttttgtgacaactttctctctcatactcacattatatttttactttctct 43715958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 21922217 - 21922132
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||  |||||||| |||| |||||| |||| ||||| |||||||||||| |  |||||||| |||||||    
T  21922217 tgagaaatgatatttgaacatccattttgtgacaacgtttgtgacaactttctctctcatactcacatcatattcttattttctct 21922132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 22098254 - 22098339
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  22098254 tgagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcacattatatttttactttctct 22098339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 14011317 - 14011401
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||||||||||  ||||| |||| ||||||| ||| |||||  |||| | ||||||||||||    
T  14011317 gagaaatgatatttgaacaatcattttgtaacaacttttgtgacaactttctatttcacactcatattgtttccttactttctct 14011401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 24468357 - 24468273
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| ||||||  |||||  ||||| | || |||||||||||||||||| || |||| |||||||||||    
T  24468357 gagaaatgatatttgaacaaccatttttaaacaacttttgtgataactttctatctcatactcacattatatttttactttctct 24468273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 18660759 - 18660842
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||||| | || |||||||||||    
T  18660759 gagaaatgatatttgaacaaccatttt-tgacaacttttgtgacaattttctctctcatactcacgttatctttttactttctct 18660842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 18695318 - 18695382
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  18695318 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctctcatactcac 18695382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 27546063 - 27546143
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttacttt 232  Q
    ||||||||||| |||||||| |||||| | ||||| ||||| |||| ||| | |||||||||||| || |||| |||||||    
T  27546063 gagaaatgatatttgaacaatcattttatgacaaattttgtgacaactttatttctcatactcacattatatttttacttt 27546143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 43441736 - 43441802
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||| |||||||  |||||||||||||  ||||  |||| ||||| ||||||||||||    
T  43441736 ttgagaaatgatatttgaacatccattttgtaacaacttttgcaacaactttctctctcatactcac 43441802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 17097873 - 17097804
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgt 221  Q
    ||||||||||| |||||||| |||||| | | ||  ||||| |||| |||||||||||||||||| ||||    
T  17097873 gagaaatgatatttgaacaaccattttttgataacttttgtgacaattttctatctcatactcacattgt 17097804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 28306204 - 28306120
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||| | |||||||||||| || | ||||||||||||||    
T  28306204 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttatctctcatactcacattatcttcttactttctct 28306120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 8920078 - 8920142
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  ||||| |||| ||||| ||||||||||||    
T  8920078 gagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactcac 8920142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 16690497 - 16690581
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttct 234  Q
    ||||||||||||| ||| |||| |||||  ||||||  ||||| |||| ||||| | |||||||||| || |||| |||||||||    
T  16690497 ttgagaaatgatatttgtacaaccatttcttaacaacttttgtgacaactttctctttcatactcacattatatttttactttct 16690581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 22649732 - 22649649
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  22649732 gagaaatgatatttgaacaaccatttttta-caatttttgtgacaattttctctctcatactcacattatctttttactttctct 22649649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 12784471 - 12784386
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| ||| |||| |||||| ||| ||  ||||| |||| ||||| ||||||||||||||| |||| |||||||||||    
T  12784471 tgagaaatgatatttgtacaaccattttataataatttttgtgacaactttctctctcatactcacgttatatttttactttctct 12784386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 18723594 - 18723658
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| ||||||||||||    
T  18723594 gagaaatgatatttgaacatccattttgtgacaatttttgttacaactttctctctcatactcac 18723658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 38821366 - 38821450
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| |||| || |||| ||||||    
T  38821366 gagaaatgatatttgaacaaccattttatgacaacttttgtgacaattttctttctcatactcacattgtgtttttaccttctct 38821450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 26481158 - 26481079
Alignment:
Q  155 aaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttct 234  Q
    |||||||| ||||||||  ||||| ||||||  ||||| |||| ||||| ||||||||||||||||| ||  ||||||||    
T  26481158 aaatgatatttgaacaattattttttaacaacttttgtgacaattttctttctcatactcacgttgtttttctactttct 26481079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 45259353 - 45259271
Alignment:
Q  155 aaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctcta 237  Q
    |||||||| ||| |||  |||||| ||||||  ||||| |||| ||| ||||||||||||||||| |||| ||||| ||||||    
T  45259353 aaatgatatttgtacatccattttctaacaatttttgtgacaactttttatctcatactcacgttatatttttactctctcta 45259271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 14233788 - 14233727
Alignment:
Q  154 gaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactca 215  Q
    ||||||||| |||||||  |||||||| ||||  ||||| |||||||||| |||||||||||    
T  14233788 gaaatgatatttgaacatccattttgtgacaacttttgtgacaaatttctctctcatactca 14233727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 2841834 - 2841898
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||| ||  |||||||| ||||  |||||||||| ||||| ||||||||||||    
T  2841834 gagaaatgatatttgatcatccattttgtgacaacttttgttacaactttctttctcatactcac 2841898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 5031923 - 5031987
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||  |||| ||||| ||||||||||||    
T  5031923 gagaaatgatatttgtacaaccattttgtaacaacttttgcgacaactttctctctcatactcac 5031987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 6336252 - 6336336
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||  || |||| ||| |||||||    
T  6336252 gagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcatattatatttttattttctct 6336336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 9207590 - 9207673
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  9207590 gagaaatgatatttgaacaatcatttttta-caacttttgtgacaactttctctctcatactcacattatttttttactttctct 9207673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 18254280 - 18254197
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  18254280 gagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 18254197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 33737369 - 33737321
Alignment:
Q  188 tttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||| |||||||||| ||||||||||||||| | || |||||||||||    
T  33737369 tttgtgacaaatttctctctcatactcacgttatgtttttactttctct 33737321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 36802896 - 36802960
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||| ||||| ||||| ||||||||||||    
T  36802896 gagaaatgatatttgaacatccattttgtgacaacttttgctacaactttctctctcatactcac 36802960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 38560678 - 38560742
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| || ||||  |||||||||||||  |||||||||| ||||| | ||||||||||    
T  38560678 gagaaatgatattttaacattcattttgtaacaacttttgttacaactttctttgtcatactcac 38560742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 39449188 - 39449124
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| | ||||||||||    
T  39449188 gagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctttcatactcac 39449124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 41042254 - 41042337
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| ||||||  ||||| |||| ||| | |||||||||||| || | || |||||||||||    
T  41042254 gagaaatgatatttgaacaaccatttt-taacaacttttgtgacaactttttctctcatactcacattatctttttactttctct 41042337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 44484727 - 44484664
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  |||| ||||| ||||| ||||||||||||    
T  44484727 gagaaatgatatttgtacaaccattttgtaacaatttttg-tacaactttctctctcatactcac 44484664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 43159646 - 43159562
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| ||||||  ||||| |||| ||||||||||||||||   || |||| |||||||||||    
T  43159646 gagaaatgatatttgaacaaccattttttaacaatttttgtgacaactttctatctcatactcgtattatatttttactttctct 43159562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 47448826 - 47448908
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttct 234  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| |||| || |||||||||    
T  47448826 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattgtgtttttactttct 47448908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 41018663 - 41018747
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||||||||  |||||   ||||  ||||| |||| |||||||||||||||||| || |||| |||||||||||    
T  41018663 gagaaatgatatttgaacaactatttttggacaacttttgtgacaactttctatctcatactcacattatatttttactttctct 41018747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 44895643 - 44895560
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||||||||||| ||||||| | || |||||||||||    
T  44895643 gagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctatctcatattcacgttatctttttactttctct 44895560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 46829479 - 46829543
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  46829479 gagaaatgatatttgtacaaccattttgtaacaatttttgtgacaactttctctctcatactcac 46829543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 40854729 - 40854642
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||||  || |||  |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  40854729 tttgagaaatgatatctgtacatccattttctaacaacttttgtgacaattttctctctcatactcacattatatttttactttctct 40854642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 4971290 - 4971373
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||||| ||||  ||| | |||| ||||| |||||||||||| || |||||||||| |||||    
T  4971290 gagaaatgatatttgtacaaccattttgtgacaacttttat-acaactttctctctcatactcacattatattcttactatctct 4971373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 12007257 - 12007193
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  12007257 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcac 12007193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 30941386 - 30941469
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  30941386 gagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 30941469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 42584802 - 42584882
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttacttt 232  Q
    |||||||||||  || |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||    
T  42584802 gagaaatgatatatgtacaaccattttctaacaacttttgtgacaactttctctctcatactcacattatatttttacttt 42584882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 47288082 - 47288162
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttacttt 232  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| |||||||||| |||| |||| |||||||    
T  47288082 gagaaatgatatttgtacaaccattttgtaacaatttttgtgacaactttctctctcatactcgcgttatatttttacttt 47288162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 21617180 - 21617247
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| ||||||||||||    
T  21617180 tttgagaaatgatatttgaacatccattttgtgacaatttttgttacaactttctctctcatactcac 21617247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 3078980 - 3078915
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  3078980 tgagaaatgatatttgtacaatcattttgtaacaacttttgtgacaactttctctctcatactcac 3078915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 44257801 - 44257717
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||  ||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  44257801 gagaaatgatatttgtgcaatcattttctaacaatttttgtgacaactttctctctcatactcacattatatttttactttctct 44257717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 14593826 - 14593892
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||| ||||| |  |||||||| ||||  |||||||||| ||||||| ||||||||||    
T  14593826 ttgagaaatgatatttgaatatccattttgtgacaacttttgttacaactttctatttcatactcac 14593892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 36123533 - 36123447
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||| ||| |||| |||||| ||||||  ||| | |||| ||||| ||||||||| || || |||| |||||||||||    
T  36123533 ttgagaaatgatatttgtacaatcattttataacaacttttatgacaactttctctctcatacttacattatatttttactttctct 36123447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 51887661 - 51887726
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactca 215  Q
    ||||||||||||| |||||||  |||||||| ||||  |||| ||||| ||||| |||||||||||    
T  51887661 ttgagaaatgatatttgaacatccattttgtgacaacttttgctacaactttctctctcatactca 51887726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 2004260 - 2004196
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| ||||||  ||||  |||| |||||||||| |||||||    
T  2004260 gagaaatgatatttgaacaaccattttttaacaacttttgcaacaactttctatctcttactcac 2004196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 37297049 - 37297132
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  37297049 gagaaatgatatttgaacaaccatttttta-caacttttgtgacaattttctctctcatactcacattatctttttactttctct 37297132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 37514203 - 37514139
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||  |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  37514203 gagaaatgatatttgtacatccattttgtaacaacttttgtgacaactttctctctcatactcac 37514139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 42815404 - 42815468
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| ||||  ||||||||||||  ||||| |||| ||||| ||||||||||||    
T  42815404 gagaaatgatatttgtacaactattttgtaacaacttttgtgacaactttctctctcatactcac 42815468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 51255746 - 51255810
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  51255746 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcac 51255810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 52204850 - 52204934
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||||||||  ||||| ||||||  ||||||| || ||||| | |||||||||| |||| ||  ||||||||||    
T  52204850 gagaaatgatatttgaacaattattttttaacaatttttgttataattttctctttcatactcacattgtttttctactttctct 52204934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 56557733 - 56557817
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||||||||  ||||| | ||||  ||||| |||| ||||| |||||||||||| |||| || |||| ||||||    
T  56557733 gagaaatgatatttgaacaacaattttatgacaacttttgtgacaattttctctctcatactcacattgtgtttttaccttctct 56557817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 30535991 - 30536075
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  30535991 gagaaatgatatttgtacaatcattttttaacaatttttgtgacaactttctctctcatactcacattatatttttactttctct 30536075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 35369700 - 35369783
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || |||  ||||| |||| |||||||||||||||||| |||| || |||||||||||    
T  35369700 gagaaatgatatttgaacaatcatttttta-caacttttgtgacaactttctatctcatactcacattgtctttttactttctct 35369783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 52714975 - 52714905
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgtt 219  Q
    |||||||||||||| |||||||  |||||| ||||||  ||||| |||| ||||| |||||||||||||||    
T  52714975 tttgagaaatgatatttgaacatccattttataacaacttttgtgacaattttctttctcatactcacgtt 52714905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 649768 - 649852
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  649768 gagaaatgatatttgaacaaccatttttttacaacttttgtgacaactttctctctcatactcacattatctttttactttctct 649852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 12999893 - 12999810
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  12999893 gagaaatgatatttgtacaaccattttctaacaacttttgt-acaactttctctctcatactcacattatatttttactttctct 12999810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 44789218 - 44789150
Alignment:
Q  148 atttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| | ||||||||||    
T  44789218 atttgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctttcatactcac 44789150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 9567032 - 9566949
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctc 235  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| || | || ||||||||||    
T  9567032 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattatgtttttactttctc 9566949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 49931550 - 49931633
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttacttt 232  Q
    |||||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| ||||||| |||| || |||| |||||||    
T  49931550 tttgagaaatgatatttgtacaatcattttttaacaacttttgtgacaactttctctctcatattcacattatatttttacttt 49931633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 37685330 - 37685414
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  37685330 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 37685414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 37700188 - 37700104
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  37700188 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 37700104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 49020476 - 49020391
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||| | |||||||||||| || |||| || ||||||||    
T  49020476 tgagaaatgatatttgtacaaccattttttaacaacttttgtgacaattttttctctcatactcacattatattttttctttctct 49020391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 9987951 - 9988035
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| || ||| | ||||  ||||| |||| ||||| | |||||||||| || |||| |||||||||||    
T  9987951 gagaaatgatatttgaacaaccaatttttgacaacttttgtgacaactttctctttcatactcacattatatttttactttctct 9988035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 21433472 - 21433408
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||| ||||||||    
T  21433472 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctcttatactcac 21433408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 30505411 - 30505324
Alignment:
Q  148 atttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||||| ||| |||| || ||| |||| || ||| | |||||||||| ||||||| ||||| | |||||||| |||||||    
T  30505411 atttgagaaatgatatttgtacaaccaatttctaac-aattttttgacaaatttctctctcatattcacgatatattcttattttctct 30505324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 48983739 - 48983675
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  48983739 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcac 48983675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 49446869 - 49446785
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| | || ||||||||| |||  ||||| |||| ||||| ||||||||| || || |||| |||||||||||    
T  49446869 gagaaatgatatttgtaaaaccattttgtaccaatttttgtgacaactttctctctcatacttacattatatttttactttctct 49446785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 14207332 - 14207265
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||||| ||||||||  ||||||||||||  ||||| |||| ||||| ||||||||||||    
T  14207332 tttgagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctctcatactcac 14207265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 14215080 - 14215013
Alignment:
Q  149 tttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    |||||||||||||| ||||||||  ||||||||||||  ||||| |||| ||||| ||||||||||||    
T  14215080 tttgagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctctcatactcac 14215013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 29573429 - 29573363
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  29573429 ttgagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctctcatactcac 29573363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 10811135 - 10811219
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| |||||||||||| |||| || |||| ||||||    
T  10811135 gagaaatgatatttgaacaaccattttatgacaacttttgtgacaactttctctctcatactcacattgtgtttttaccttctct 10811219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 26452778 - 26452710
Alignment:
Q  168 acaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||| |||||| ||||||  |||||||||| ||||| |||||||||||| || |||| |||||||||||    
T  26452778 acaaccattttctaacaacttttgttacaactttctctctcatactcacattatatttttactttctct 26452710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 38926628 - 38926711
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  38926628 gagaaatgatatttgaacaaccatttttta-caacgtttgtgacaactttctctctcatactcacattatctttttactttctct 38926711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 48405410 - 48405494
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||||| ||||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  48405410 gagaaatgatatttgtacaaccattttgtgacaacttttgtaacaactttctctctcatactcacattatgtttttactttctct 48405494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 48352994 - 48353080
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||||| ||| |||  |||||| ||||||  ||||| |||| ||||| |||||||||||  || |||| |||||||||||    
T  48352994 ttgagaaatgatatttgtacatccattttttaacaacttttgtgacaactttctctctcatactcatattatatttttactttctct 48353080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 26014811 - 26014895
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  26014811 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 26014895  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 41717304 - 41717345
Alignment:
Q  194 acaaatttctatctcatactcacgttgtattcttactttctc 235  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  41717304 acaactttctatctcatactcacgttatattcttactctctc 41717345  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 13712775 - 13712843
Alignment:
Q  168 acaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||| |||||| ||||||  ||||| |||| ||| |||||||| |||||||| |||| |||||||||||    
T  13712775 acaaccattttttaacaacatttgtgacaattttatatctcattctcacgttatatttttactttctct 13712843  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 20548061 - 20547978
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| |||||||| || ||| || |||  ||||| |||| ||||| ||||||||||||||| | || |||||||||||    
T  20548061 gagaaatgatatttgaacaatcagttttta-caacttttgtgacaattttctctctcatactcacgttatctttttactttctct 20547978  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 24483038 - 24482970
Alignment:
Q  148 atttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||||| |||||||  |||||||| ||||  ||||  |||| ||||| ||||||||||||    
T  24483038 atttgagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcac 24482970  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 26996316 - 26996380
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  ||||| |||||||  ||||| |||| ||||| ||||||||||||    
T  26996316 gagaaatgatatttgaacattcatttagtaacaacttttgtaacaactttctctctcatactcac 26996380  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 27718857 - 27718793
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| | || |||||||||||||  ||||| |||| ||||| ||||||||||||    
T  27718857 gagaaatgatacttgtataatcattttgtaacaacttttgtgacaactttctctctcatactcac 27718793  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 37894314 - 37894250
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| ||||||||||||    
T  37894314 gagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcac 37894250  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 45186623 - 45186539
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||| |||| ||| |||| |||||| ||||||  ||||| |||| ||||| |||||| ||||| || |||| |||||||||||    
T  45186623 gagaaaagatatttgtacaaccattttctaacaatttttgtgacaactttctctctcatgctcacattatatttttactttctct 45186539  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 49761257 - 49761174
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||||||  ||||| |||| ||||| ||||| |||||| || |||| |||||||||||    
T  49761257 gagaaatgatatttgtacaaccattttctaacaatttttgt-acaactttctctctcacactcacattatatttttactttctct 49761174  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 15368894 - 15368833
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatact 213  Q
    ||||||||||| |||||||  |||||||||||||  |||||||||| ||||| |||||||||    
T  15368894 gagaaatgatatttgaacatccattttgtaacaacttttgttacaactttctctctcatact 15368833  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 16368118 - 16368034
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||| ||| ||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  16368118 gagaaatgatatttgtacaaccattttataataatttttgtaacaactttctttctcatactcacattatatttttactttctct 16368034  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 25811910 - 25811826
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    |||||||||||| |||||||| |||||| || |||  ||||| |||| ||||| |||||||||||| || | || |||||||||||    
T  25811910 tgagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacattatctttttactttctct 25811826  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 2242093 - 2242029
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  2242093 gagaaatgatatttgaacaatcattttttgacaatttttgtgacaactttctctctcatactcac 2242029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 15318259 - 15318195
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| ||||||| ||||    
T  15318259 gagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatattcac 15318195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 16337994 - 16337910
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| | | |||| |||||| ||| ||  ||||| |||| ||||| |||||||||||| || |||| |||||||||||    
T  16337994 gagaaatgatattggtacaaccattttataataacttttgtaacaactttctctctcatactcacattatatttttactttctct 16337910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 17182007 - 17181943
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| || ||||| ||||||  |||||  ||||| |||| ||||||||||||||||||    
T  17182007 gagaaatgatatttaaacaaccatttttgaacaacttttgtaacaactttctatctcatactcac 17181943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 17551450 - 17551386
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||| |||||| | ||||  ||||| |||| ||||| ||||||||||||    
T  17551450 gagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcac 17551386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 25127904 - 25127820
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgtattcttactttctct 236  Q
    ||||||||||| ||| |||| |||||||||||||  ||||| | || ||||| ||| |||||||| || | || |||||||||||    
T  25127904 gagaaatgatatttgtacaaccattttgtaacaacttttgtgaaaactttctctctgatactcacattatgtttttactttctct 25127820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 33421760 - 33421824
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||| |||||||  |||||||| ||||  |||||||||| ||||| | ||||||||||    
T  33421760 gagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctttcatactcac 33421824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 8471 - 8541
Alignment:
Q  151 tgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgt 221  Q
    |||||||||||| |||||||| |||||| ||||||  ||| | |||| ||||| |||||||||||| ||||    
T  8471 tgagaaatgatatttgaacaatcattttttaacaatttttatgacaactttctctctcatactcacattgt 8541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 223552 - 223486
Alignment:
Q  150 ttgagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcac 216  Q
    ||||||||||||| ||||| |  |||||||| ||||  |||||||||| ||||||| ||||||||||    
T  223552 ttgagaaatgatatttgaatatccattttgtgacaacttttgttacaactttctatttcatactcac 223486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 6591 - 6522
Alignment:
Q  152 gagaaatgatagttgaacaagcattttgtaacaaagtttgttacaaatttctatctcatactcacgttgt 221  Q
    ||||||||||| |||||||| |||||| ||||||  ||||| |||| ||| | |||||||||||| ||||    
T  6591 gagaaatgatatttgaacaatcattttttaacaacttttgtgacaactttatctctcatactcacattgt 6522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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