View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_low_20 (Length: 246)
Name: NF20485_low_20
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_low_20 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 51768124 - 51768356
Alignment:
| Q |
1 |
ataattataatcacaggtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaatattgtcacaag |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51768124 |
ataattataatcacaagtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaatattgtcacaag |
51768223 |
T |
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| Q |
101 |
tcctcagctggaatctccatgttgccatgacgaacattaagattcaatagattatgatcctttgtggcttaactgaaagtttttgtttttatagttgaat |
200 |
Q |
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| T |
51768224 |
tcctcagctggaatctccatgttgccatgacgaacattaagattcaatagattatgatcatttgtggcttaactgaaagtttttgtttttatagttgaat |
51768323 |
T |
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| Q |
201 |
tatcattcattagtggattgaaggatcggattg |
233 |
Q |
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| T |
51768324 |
tatcattcattagtggattgaaggatcggattg |
51768356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 51804397 - 51804453
Alignment:
| Q |
22 |
tgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaag |
78 |
Q |
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|||||||| | ||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
51804397 |
tgggtgtcctaaaatatcagaaaactttcaaatatatcgagcaggcaatttctcaag |
51804453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 51780628 - 51780686
Alignment:
| Q |
22 |
tgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtt |
80 |
Q |
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| T |
51780628 |
tgggtgtcttaaaatatcagaaaactttcaaatatctcgagcaggcaatttcacaagtt |
51780686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 51772786 - 51772861
Alignment:
| Q |
16 |
ggtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaatat |
91 |
Q |
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| T |
51772786 |
ggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatat |
51772861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 51808357 - 51808401
Alignment:
| Q |
33 |
aaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaa |
77 |
Q |
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| T |
51808357 |
aaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
51808401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 7272 - 7327
Alignment:
| Q |
22 |
tgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaa |
77 |
Q |
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|||||||||| |||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
7272 |
tgggtgtcttaaaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
7327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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