View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20485_low_22 (Length: 236)

Name: NF20485_low_22
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20485_low_22
NF20485_low_22
[»] chr3 (2 HSPs)
chr3 (130-222)||(984346-984438)
chr3 (14-50)||(984229-984265)
[»] chr2 (2 HSPs)
chr2 (160-222)||(1589367-1589429)
chr2 (14-50)||(1589232-1589268)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 984346 - 984438
Alignment:
Q  130 gcacatatagttaatctatctgcctcctcattcgattgcagatcttgacaaaaaatgtataatccgttttttaaatttagaattgatatatat 222  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  984346 gcacatatagttaatctatctgcctcctcattagattgcagatcttgacaaaaactgtataatccattttttaaatttagaattgatatatat 984438  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 984229 - 984265
Alignment:
Q  14 attattctccacctctatcaaagtttactaatttggt 50  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  984229 attattctccacctcgatcaaagtttattaatttggt 984265  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 1589367 - 1589429
Alignment:
Q  160 ttcgattgcagatcttgacaaaaaatgtataatccgttttttaaatttagaattgatatatat 222  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1589367 ttcgattgcagatcttgacaaaaaatgtataatccattttttaaatttagaattgatatatat 1589429  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 1589232 - 1589268
Alignment:
Q  14 attattctccacctctatcaaagtttactaatttggt 50  Q
    |||||||||||||||||||||||||||||||||||||    
T  1589232 attattctccacctctatcaaagtttactaatttggt 1589268  T

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