View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20485_low_25 (Length: 206)
Name: NF20485_low_25
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20485_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 42451108 - 42450935
Alignment:
| Q |
14 |
agaagaagagaaaaacagtcattggtcttttgaaatcaaaggtacgttacataaaactgagtattgacacaggctattaattagttaagtagggtttcct |
113 |
Q |
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| T |
42451108 |
agaagaagagaaaaacattcattggtcttttgaaatcaaaggtacgttacataaaactgagtattgacacaggctattaattagttaagtagggtttcct |
42451009 |
T |
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| Q |
114 |
taaaaacaaaatagtttagggnnnnnnnaaaacaaagatagttaaatagggtttccttaaaacaaagatagtta |
187 |
Q |
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| T |
42451008 |
taaaaacaagatagtttagggtttttttaaaacaaatatagttaaatagggtttccttaaaacaaagatagtta |
42450935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 42450950 - 42450905
Alignment:
| Q |
142 |
aaaacaaagatagttaaatagggtttccttaaaacaaagatagtta |
187 |
Q |
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| T |
42450950 |
aaaacaaagatagttaagtagggtttccttaaaacaaagatagtta |
42450905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 743706 - 743653
Alignment:
| Q |
62 |
acataaaactgagtattgacacaggctattaattagttaagtagggtttccttaaaaa |
119 |
Q |
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| T |
743706 |
acataaaactgagtattgacacatgctatta----gttaagtagggtttccttaaaaa |
743653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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