View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20485_low_4 (Length: 453)

Name: NF20485_low_4
Description: NF20485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20485_low_4
NF20485_low_4
[»] chr8 (13 HSPs)
chr8 (12-453)||(9937608-9938048)
chr8 (165-212)||(9336190-9336237)
chr8 (403-453)||(2203496-2203546)
chr8 (403-453)||(3624584-3624634)
chr8 (403-453)||(16852344-16852394)
chr8 (403-453)||(18897170-18897220)
chr8 (404-453)||(28566109-28566158)
chr8 (404-453)||(28573732-28573781)
chr8 (403-453)||(12988432-12988482)
chr8 (403-453)||(19703509-19703559)
chr8 (403-453)||(20994480-20994530)
chr8 (403-453)||(26688869-26688919)
chr8 (404-453)||(28560611-28560660)
[»] chr2 (10 HSPs)
chr2 (403-453)||(29503275-29503325)
chr2 (403-453)||(16918600-16918650)
chr2 (403-453)||(33962806-33962856)
chr2 (403-453)||(42327417-42327467)
chr2 (404-453)||(42602558-42602607)
chr2 (403-453)||(3697421-3697471)
chr2 (403-453)||(19322772-19322822)
chr2 (403-453)||(42922418-42922468)
chr2 (403-453)||(43964010-43964060)
chr2 (403-451)||(12982518-12982566)
[»] chr7 (10 HSPs)
chr7 (403-450)||(25956314-25956361)
chr7 (403-453)||(20952171-20952221)
chr7 (403-453)||(25021357-25021407)
chr7 (403-453)||(26459432-26459482)
chr7 (407-453)||(44146577-44146623)
chr7 (406-453)||(42836026-42836073)
chr7 (406-453)||(45559204-45559251)
chr7 (403-453)||(43215188-43215238)
chr7 (403-453)||(45976945-45976995)
chr7 (404-453)||(33869468-33869517)
[»] chr1 (10 HSPs)
chr1 (159-214)||(42364921-42364976)
chr1 (403-453)||(9165217-9165267)
chr1 (403-446)||(31605870-31605913)
chr1 (403-453)||(4824975-4825025)
chr1 (403-453)||(15581163-15581213)
chr1 (403-453)||(31794286-31794336)
chr1 (403-453)||(36371474-36371524)
chr1 (403-453)||(44486179-44486229)
chr1 (403-453)||(45235401-45235451)
chr1 (403-431)||(22188827-22188855)
[»] chr6 (3 HSPs)
chr6 (403-453)||(12188325-12188375)
chr6 (406-453)||(33724700-33724747)
chr6 (403-435)||(13113983-13114015)
[»] chr5 (6 HSPs)
chr5 (403-453)||(21549159-21549209)
chr5 (403-453)||(16436622-16436671)
chr5 (403-453)||(16457814-16457864)
chr5 (403-453)||(22737086-22737136)
chr5 (403-453)||(30883220-30883270)
chr5 (420-453)||(26078090-26078123)
[»] chr4 (4 HSPs)
chr4 (403-453)||(37109373-37109423)
chr4 (403-453)||(21344821-21344871)
chr4 (403-453)||(29195099-29195149)
chr4 (407-435)||(26895139-26895167)
[»] scaffold0221 (1 HSPs)
scaffold0221 (403-453)||(2931-2981)
[»] scaffold0211 (1 HSPs)
scaffold0211 (403-453)||(24057-24107)
[»] scaffold0002 (2 HSPs)
scaffold0002 (403-453)||(94993-95043)
scaffold0002 (421-453)||(459887-459919)
[»] chr3 (3 HSPs)
chr3 (407-453)||(11092195-11092241)
chr3 (407-453)||(40372146-40372192)
chr3 (403-453)||(42799769-42799819)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 453
Target Start/End: Original strand, 9937608 - 9938048
Alignment:
Q  12 catcacaaacttcgtttccaaacaacttgccccaaaattcaaattcaaataaaattgttgtacaaagaaaacattcatgatttagtaagatgggacaatt 111  Q
    |||||||||||| ||||||||||||||||||||||||||||| |      |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9937608 catcacaaacttagtttccaaacaacttgccccaaaattcaatt------aaaattgttgtacaaagaaaacattcatgatttagtaagatgagacaatt 9937701  T
Q  112 cattatattcaaacaaaaatgcaattaaatatgaacaccaatatcacctagtgtcagcatctgcatctcgccagtaagcaatcaacgcatcgagtgcctt 211  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9937702 cattacattcaaacaaaaatgcaattaaatatgaacaccaatatcacctagcgtcagcatctgcatctcgcaagtaagcaatcaacgcatcgagtgcctt 9937801  T
Q  212 ctcatctcttgcacatgagtcnnnnnnnnnnn------aaatgacctaccacattacaaattcaaacacacaaaatgcaaaaacctaactaaccaaaaag 305  Q
    ||||||||||||||||| |||                 ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  9937802 ctcatctcttgcacatgcgtctgtttttttttttttttaaatgacctaccaaattataaattcaaacacacaaaatgcaaaaacctaactaaccaaaaag 9937901  T
Q  306 aggaacactaactaaccaaattgacggatgcgagggtcctttgaagaagataagctaacccaccaaaattggtcgtggagagaatgaaacaggagatgag 405  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  9937902 aggaacactaactaaccaaattgacggatgcgagggtc-tttgaagaagataagctaacccacccaaattggtcgtggagagaatgaaacatgagacgag 9938000  T
Q  406 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9938001 gagcacacttcaaggtcccaaaccaataccattagaccaacccaagtg 9938048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 9336190 - 9336237
Alignment:
Q  165 tcagcatctgcatctcgccagtaagcaatcaacgcatcgagtgccttc 212  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  9336190 tcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 9336237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 2203546 - 2203496
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  2203546 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 2203496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 3624634 - 3624584
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  3624634 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 3624584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 16852394 - 16852344
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  16852394 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 16852344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 18897220 - 18897170
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||||||  ||||||||||||||| |||| ||||||||||||||||    
T  18897220 gaggagcacactctaaggtcccaaaccaacaccactaggccaacccaagtg 18897170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 28566158 - 28566109
Alignment:
Q  404 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||  |||||||||||||||||||| |||| |||||||||||    
T  28566158 aggagcacactctaaggtcccaaaccaataccactaggtcaacccaagtg 28566109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 28573781 - 28573732
Alignment:
Q  404 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||  |||||||||||||||||||| |||| |||||||||||    
T  28573781 aggagcacactctaaggtcccaaaccaataccactaggtcaacccaagtg 28573732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 12988482 - 12988432
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||||| |||| |||| ||||||||| |||||||| |||||||    
T  12988482 gaggagcacacttccaggttccaagccaataccactaggccaatccaagtg 12988432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 19703509 - 19703559
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||||||   ||||||||| ||||||||| ||||||||||||||||    
T  19703509 gaggagcacactctcaggtcccaagccaataccactaggccaacccaagtg 19703559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 20994480 - 20994530
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | |||||||||  |||||||| ||||||||||||||||    
T  20994480 gaggagcacactcccaggtcccaagtcaataccactaggccaacccaagtg 20994530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 26688919 - 26688869
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| ||||||||||| |||| ||||  |||||||||||||||    
T  26688919 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtg 26688869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 28560660 - 28560611
Alignment:
Q  404 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||  |||||||||||||||||||| |||  |||||||||||    
T  28560660 aggagcacactctaaggtcccaaaccaataccactagttcaacccaagtg 28560611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 29503325 - 29503275
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  29503325 gaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtg 29503275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 16918600 - 16918650
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | || |||||||||||||||| ||||||||||||||||    
T  16918600 gaggagcacactcccagatcccaaaccaataccactaggccaacccaagtg 16918650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 33962806 - 33962856
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | || ||||||||||||| |||||||||||||||||||    
T  33962806 gaggagcacactcccagttcccaaaccaatatcattaggccaacccaagtg 33962856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 42327417 - 42327467
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  42327417 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 42327467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 42602607 - 42602558
Alignment:
Q  404 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  42602607 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 42602558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 3697421 - 3697471
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||| || ||||||||||| |||||||||| || ||||||||||||    
T  3697421 gaggagcactctccaaggtcccaagccaataccatcagaccaacccaagtg 3697471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 19322822 - 19322772
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||||||||||||| |||  |||||||||||    
T  19322822 gaggagcacactcccaggtcccaaaccaataccactagatcaacccaagtg 19322772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 42922468 - 42922418
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | |||| |||| ||||||||| ||||||||||||||||    
T  42922468 gaggagcacactcccaggttccaagccaataccactaggccaacccaagtg 42922418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 43964010 - 43964060
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| |||||||||||||||| || | ||| ||||||||||||    
T  43964010 gaggagcacactccaaggtcccaaaccaacactactagaccaacccaagtg 43964060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 451
Target Start/End: Original strand, 12982518 - 12982566
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaag 451  Q
    |||||||||||||  ||||| ||| ||||||||| ||||||||||||||    
T  12982518 gaggagcacacttgcaggtctcaatccaataccactaggccaacccaag 12982566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 450
Target Start/End: Original strand, 25956314 - 25956361
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaa 450  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  25956314 gaggagcacactccaaggtcccaagccaataccactaggccaacccaa 25956361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 20952171 - 20952221
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | |||||||||||||||||||| ||| |||||||||||    
T  20952171 gaggagcacactcccaggtcccaaaccaataccatcaggtcaacccaagtg 20952221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 25021357 - 25021407
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  25021357 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 25021407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 26459432 - 26459482
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  26459432 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 26459482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 44146577 - 44146623
Alignment:
Q  407 agcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||    
T  44146577 agcacactccaaggtcccaaaccaacaccactaggccaacccaagtg 44146623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 453
Target Start/End: Original strand, 42836026 - 42836073
Alignment:
Q  406 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  42836026 gagcacactcccaggtcccaagccaataccactaggccaacccaagtg 42836073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 453
Target Start/End: Complemental strand, 45559251 - 45559204
Alignment:
Q  406 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||| |||||| |||| ||||||||| ||||||||||||||||    
T  45559251 gagcacactccaaggttccaagccaataccactaggccaacccaagtg 45559204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 43215238 - 43215188
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||| ||||||||||||    
T  43215238 gaggagcacactccgaggtcccaagccaataccactagaccaacccaagtg 43215188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 45976945 - 45976995
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||| ||| ||||||||| ||||||||||||||||    
T  45976945 gaggagcacactcccaggtcacaagccaataccactaggccaacccaagtg 45976995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 33869468 - 33869517
Alignment:
Q  404 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||||||| ||||| ||| ||||||| | ||||||||||||||||    
T  33869468 aggagcacacttccaggtctcaagccaatactactaggccaacccaagtg 33869517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 42364921 - 42364976
Alignment:
Q  159 ctagtgtcagcatctgcatctcgccagtaagcaatcaacgcatcgagtgccttctc 214  Q
    |||| ||||||||||||| ||||| ||||||||||||| ||||| |||||||||||    
T  42364921 ctagcgtcagcatctgcagctcgcaagtaagcaatcaatgcatcaagtgccttctc 42364976  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 9165217 - 9165267
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  9165217 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 9165267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 31605870 - 31605913
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaac 446  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||    
T  31605870 gaggagcacacttcaaggtcccaagccaacaccatcaggccaac 31605913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 4825025 - 4824975
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| ||||||||||| |||| ||||| || ||||||||||||    
T  4825025 gaggagcacactccaaggtcccaagccaacaccatcagaccaacccaagtg 4824975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 15581163 - 15581213
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| ||||||||||| |||| ||||  |||||||||||||||    
T  15581163 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtg 15581213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 31794286 - 31794336
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | | ||||||| ||||||||| ||||||||||||||||    
T  31794286 gaggagcacactcccaagtcccaagccaataccactaggccaacccaagtg 31794336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 36371524 - 36371474
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | |||| |||| ||||||||| ||||||||||||||||    
T  36371524 gaggagcacactcccaggttccaagccaataccactaggccaacccaagtg 36371474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 44486179 - 44486229
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| |||||| ||||||||| |||| |||||||| |||||||    
T  44486179 gaggagcacactccaaggttccaaaccaacaccactaggccaatccaagtg 44486229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 45235401 - 45235451
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | | |||||||||||||||||| || ||||||||||||    
T  45235401 gaggagcacactcccaagtcccaaaccaataccatcagaccaacccaagtg 45235451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 431
Target Start/End: Original strand, 22188827 - 22188855
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaa 431  Q
    |||||||||||||||||||||||||||||    
T  22188827 gaggagcacacttcaaggtcccaaaccaa 22188855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 12188325 - 12188375
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  12188325 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 12188375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 453
Target Start/End: Original strand, 33724700 - 33724747
Alignment:
Q  406 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||  ||||||||||||||| |||||||||||| ||||||||    
T  33724700 gagcacactctaaggtcccaaaccaacaccattaggccatcccaagtg 33724747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 13113983 - 13114015
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaatacc 435  Q
    |||||||||||||||||||||||| ||||||||    
T  13113983 gaggagcacacttcaaggtcccaagccaatacc 13114015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 21549159 - 21549209
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  21549159 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 21549209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 16436671 - 16436622
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| |||| |||||| ||||||||| ||||||||||||||||    
T  16436671 gaggagcacactccaag-tcccaagccaataccactaggccaacccaagtg 16436622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 16457864 - 16457814
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| ||||||||||| |||||||||  ||||||||| |||||    
T  16457864 gaggagcacactccaaggtcccaagccaataccaccaggccaacctaagtg 16457814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 22737136 - 22737086
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||||| | ||||||| ||||||||| ||| ||||||||||||    
T  22737136 gaggagcacacttccaagtcccaagccaataccactagaccaacccaagtg 22737086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 30883220 - 30883270
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||| ||||||||||||    
T  30883220 gaggagcacactcccaggtcccaagccaataccactagaccaacccaagtg 30883270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 453
Target Start/End: Original strand, 26078090 - 26078123
Alignment:
Q  420 gtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||||||||||| ||||||||||||||||    
T  26078090 gtcccaaaccaataccactaggccaacccaagtg 26078123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 37109373 - 37109423
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  37109373 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 37109423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 21344871 - 21344821
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| ||||||||||| |||| | ||| |||||||||||||||    
T  21344871 gaggagcacactccaaggtcccaagccaacatcatcaggccaacccaagtg 21344821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 29195149 - 29195099
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| ||||||||||| |||| ||||  |||||||||||||||    
T  29195149 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtg 29195099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 435
Target Start/End: Complemental strand, 26895167 - 26895139
Alignment:
Q  407 agcacacttcaaggtcccaaaccaatacc 435  Q
    |||||||||||||||||||||||||||||    
T  26895167 agcacacttcaaggtcccaaaccaatacc 26895139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 2931 - 2981
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||| ||||||||||||||||||||||| ||||  | |||||||||||||    
T  2931 gaggatcacacttcaaggtcccaaaccaaaaccaccaagccaacccaagtg 2981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 24107 - 24057
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | | |||||||  |||||||||||||||||||||||||    
T  24107 gaggagcacactcctaagtcccaagtcaataccattaggccaacccaagtg 24057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 94993 - 95043
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| | |||| |||| ||||||||| ||||||||||||||||    
T  94993 gaggagcacactcccaggttccaagccaataccactaggccaacccaagtg 95043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 421 - 453
Target Start/End: Complemental strand, 459919 - 459887
Alignment:
Q  421 tcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||||||||||||||||||||||||| |||||    
T  459919 tcccaaaccaataccattaggccaaccaaagtg 459887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 11092195 - 11092241
Alignment:
Q  407 agcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||| ||||||||||| |||| |||| ||||||||||||||||    
T  11092195 agcacactacaaggtcccaagccaacaccactaggccaacccaagtg 11092241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 453
Target Start/End: Complemental strand, 40372192 - 40372146
Alignment:
Q  407 agcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    ||||| ||||||||||||||||||||||||| || |||||| |||||    
T  40372192 agcacccttcaaggtcccaaaccaataccatcagaccaacctaagtg 40372146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 42799769 - 42799819
Alignment:
Q  403 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 453  Q
    |||||||||||| ||||||||||| |||| ||||  |||||||||||||||    
T  42799769 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtg 42799819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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