View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_high_14 (Length: 363)
Name: NF20486_high_14
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 22 - 353
Target Start/End: Complemental strand, 2564567 - 2564241
Alignment:
| Q |
22 |
cacgattgaatgtttgattgaaaaattgtatgattgatnnnnnnnnttgaatttgttaattggaaaagaaaaaacatgttgattgaaggataaattccta |
121 |
Q |
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| T |
2564567 |
cacgattgaatgtttgattgaaaaattgtatgactgataaaaaaaattgaatttgttaattggaaaagaaaaaacatgttgattgaaggataaattccta |
2564468 |
T |
|
| Q |
122 |
tgtttgtaaccatttaatttttctttcttggtaatactacctttaatttgttcaatcaacctaagaacaaattcaannnnnnnncgtccaatagaagata |
221 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
2564467 |
tgtatgtaaccattcaatttttctttcttggtaatactacctttaatttgttcaatcaacctaagaacaaattcaattttttttcgtccaatggaagata |
2564368 |
T |
|
| Q |
222 |
taagtttgtgtgtttgtttgatactaagttcctatcatgtcagtatcatatcgtatccttattcaacttcttattctatttcatatctatcttatcatgc |
321 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564367 |
taagtgtgtgtgtttgtttgatac-----tcctatcatgtcagtatcacatcgtatccttattcaacttcttattctatttcatatctatcttatcatgc |
2564273 |
T |
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| Q |
322 |
acacccaacaaccttaaatttttatctctctg |
353 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
2564272 |
acacccaacaaccttaaatttttatcactctg |
2564241 |
T |
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