View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_high_16 (Length: 335)
Name: NF20486_high_16
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 1904442 - 1904171
Alignment:
| Q |
16 |
gtttttgctttcaaaagcccttattattagttgatgatagcaatttcgtacatgtcggtccacaaaaaatcagttcggttttttgtaaaggtattttcag |
115 |
Q |
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| T |
1904442 |
gtttttgctttcaaaagcccttattattaattgatgatagcaatttcgtacatgtcggtccacaaaaaatcagtttggttttttgtaaaggtattttcag |
1904343 |
T |
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| Q |
116 |
ctcggttgaaaaccacatgatcagtgcactaaacctttatatcaatttggtttgaaacgaatcattatcggttcaattgagttttatcgaactgttgtaa |
215 |
Q |
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| T |
1904342 |
ctcggttgaaaaccacatgatcagtgcactaaacctttatatcaatttggtttgaaacgaatcatt-------------------atcgaactgttgtaa |
1904262 |
T |
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| Q |
216 |
cagttagattttccttcctaaaccgaacaataatgaaccaacatggtgggatctttgtatatttgcttcctaatgtttcatttcaagcaaa |
306 |
Q |
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| T |
1904261 |
cagttagattttccttcctaaaccgaacaataatgaacctacatggtgggatctttgtatatttgcttcctaatgtttcatttcaagcaaa |
1904171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 1908675 - 1908404
Alignment:
| Q |
16 |
gtttttgctttcaaaagcccttattattagttgatgatagcaatttcgtacatgtcggtccacaaaaaatcagttcggttttttgtaaaggtattttcag |
115 |
Q |
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| T |
1908675 |
gtttttgctttcaaaagcccttattattaattgatgatagcaatttcgtacatgtcggtccacaaaaaatcagtttggttttttgtaaaggtattttcag |
1908576 |
T |
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| Q |
116 |
ctcggttgaaaaccacatgatcagtgcactaaacctttatatcaatttggtttgaaacgaatcattatcggttcaattgagttttatcgaactgttgtaa |
215 |
Q |
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| T |
1908575 |
ctcggttgaaaaccacatgatcagtgcactaaacctttatatcaatttggtttgaaacgaatcatt-------------------atcgaactgttgtaa |
1908495 |
T |
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| Q |
216 |
cagttagattttccttcctaaaccgaacaataatgaaccaacatggtgggatctttgtatatttgcttcctaatgtttcatttcaagcaaa |
306 |
Q |
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| T |
1908494 |
cagttagattttccttcctaaaccgaacaataatgaacctacatggtgggatctttgtatatttgcttcctaatgtttcatttcaagcaaa |
1908404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 1899301 - 1899206
Alignment:
| Q |
17 |
tttttgctttcaaaagcccttattattagtt-gatgatagcaatttcgtacatgtcggtccacaaaaaatcagttcggttttttgtaaaggtattt |
111 |
Q |
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| T |
1899301 |
ttttttctttcaaaagcccttattattggtttgatgatagcaatgttgtacatgtcggtccacaaaaaatcaatacggtttttgttaaaggtattt |
1899206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 1899195 - 1899119
Alignment:
| Q |
74 |
tccacaaaaaatcagttcggtttttt-gtaaaggtattttcagctcggttgaaaaccacatgatcagtgcactaaac |
149 |
Q |
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| T |
1899195 |
tccaaaaagaatcagttcggtttttttgtaaaggtattttcagctcggttgaaaaccacataatcggtgcactaaac |
1899119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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