View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20486_high_18 (Length: 317)

Name: NF20486_high_18
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20486_high_18
NF20486_high_18
[»] chr5 (1 HSPs)
chr5 (5-303)||(7433471-7433769)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 303
Target Start/End: Complemental strand, 7433769 - 7433471
Alignment:
Q  5 tacaaaataactattaaatgaaatcaagaacaagttccgaaaccagtcaaaatttgaagcataatgaacatagttctccaaaaatagtagaaactttctt 104  Q
    |||||||||  |||||||||||| ||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||    
T  7433769 tacaaaatagttattaaatgaaaccaagaacaagttttgaaaccagtcaaaatttgaagcatagtgaacgtagttctccaaaaatagtagaaactttttt 7433670  T
Q  105 tatttttaaaaagaaacaaaattcttcgttagtaaaagaacacatttttacaaaacataactaaacacctaggaactttaaagaaatgaagaagatctct 204  Q
    || |||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7433669 tacttttcaaaagaaacaaaattcttcattagtaaaaaaacacatttttacaaaacataactaaacacctaggaactttaaagaaatgaagaagatctct 7433570  T
Q  205 actcctccaacaagactaccgtgcttttgctgcctatctacatctcactatttaggaaccagttcctaccaaagtagaatgatacatgcatgcatatat 303  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7433569 actcctccaacaagactaccgtgcttttgctacctatctacatctcactatttaggaaccagttcctaccaaagtagaatgatacatgcatgcatatat 7433471  T

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