View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20486_high_2 (Length: 567)
Name: NF20486_high_2
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 199 - 542
Target Start/End: Original strand, 4571593 - 4571937
Alignment:
| Q |
199 |
ctttaaagccatgtaattattcaacataacatgccgactctggatgaactccagttctttttgcatgccttgtaacatcaatgctgataaataaagtccg |
298 |
Q |
| |
|
|||||||| | ||||||||||||||||| | || ||||||||||||||||| ||||||||||| ||||||||| |||| || ||||||||||||||| | |
|
|
| T |
4571593 |
ctttaaagtcgtgtaattattcaacatagcttgtcgactctggatgaactctagttctttttgtatgccttgttacattaacgctgataaataaagtgtg |
4571692 |
T |
|
| Q |
299 |
ttttgttatgtttcgattgttacttgccatcgttcttggttcttcttcgatacatctttgattcttttggttcttacataggtttgacaaactgatcctg |
398 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4571693 |
ttttgttatgtttcaattgttacttgccatcattcttggttcttctttgatacatctttga---------ttcttacataggtttgacaaactgatcctg |
4571783 |
T |
|
| Q |
399 |
gagatgccagatgtagatataaatgtgccagtcaacaa----------tcagaaaaggaatgtgtgttggtgtattttggttgaattcgaaggggttagt |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| | |
|
|
| T |
4571784 |
gagatgccagatgtagatataaatgtgccagtcaacaatcagaaacagtcagaaaaggaatgtgtgttgatgtattttggttgaagtcgaaggggttatt |
4571883 |
T |
|
| Q |
489 |
tcagttgtggttttttgaccttcaacgattctggtcctgctttgatattctttt |
542 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| ||||||| |||||||||||||| |
|
|
| T |
4571884 |
tcagttgtggttttttaaccttgagcgattccggtcctgttttgatattctttt |
4571937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 352 - 547
Target Start/End: Original strand, 14703405 - 14703596
Alignment:
| Q |
352 |
atctttgattcttttggttcttacataggtttgacaaactgatcctggagatgccagatgtagatataaatgtgccagtcaacaatcagaaaaggaatgt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14703405 |
atctttgattcttttggttcttacataggtttgacaaactgatcctggagatgccagatgtagatataaatgtgccagtcaacaatcagaaaaggaatgt |
14703504 |
T |
|
| Q |
452 |
gtgttggtgtattttggttgaattcgaaggggttagttcagttgtggttttttgaccttcaacgattctggtcctgctttgatattcttttgttat |
547 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14703505 |
gtgttggtgtagtttggttgaattcaaa----ttagttcagttgtggttttttgaccttcaacgattacggtcctgctttgatattcttttgttat |
14703596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 202 - 494
Target Start/End: Original strand, 10220080 - 10220352
Alignment:
| Q |
202 |
taaagccatgtaattattcaa-cataacatgccgactctggatgaactccagttctttttgcatgccttgtaacatcaatgctgataaataaagtccgtt |
300 |
Q |
| |
|
|||||||||| |||||||||| |||| |||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10220080 |
taaagccatgaaattattcaaacatagcatgtggactctggatgaactgtcgttatttttgcatgccttgtaacat---------taaataaagtgcgtt |
10220170 |
T |
|
| Q |
301 |
ttgttatgtttcgattgttacttgccatcgttcttggttcttcttcgatacatctttgattcttttggttcttacataggtttgacaaactgatcctgga |
400 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10220171 |
ttgttatgtttcgaatgttactttccatcattcttg-----------atacatctttgattcttttggttcttacataggttggacaaactgatcctgga |
10220259 |
T |
|
| Q |
401 |
gatgccagatgtagatataaatgtgccagtcaacaatcagaaaaggaatgtgtgttggtgtattttggttgaattcgaaggggttagttcagtt |
494 |
Q |
| |
|
||| |||||||||||||||||||| | |||| |||||| ||| || |||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
10220260 |
gataccagatgtagatataaatgttctgttcaataatcag-aaacaaaagtgtgttggtgtattttggttgaagttgaaggggttagttcagtt |
10220352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 31245650 - 31245603
Alignment:
| Q |
86 |
atgttgtttagactaggattaagttcaatgcggtagtttaaaagttga |
133 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||| |||| |
|
|
| T |
31245650 |
atgttgtttagactagatttaagttcaatgtggtagtttaaaacttga |
31245603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 6532389 - 6532308
Alignment:
| Q |
52 |
taaatgatcaaatgcttgtgtctttgcaatgtggatgttgtttagactaggattaagttcaatgcggtagtttaaaagttga |
133 |
Q |
| |
|
|||||||||||||| ||| | |||||||| || |||||||||| |||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
6532389 |
taaatgatcaaatgattgcctgtttgcaatatgaatgttgtttatactaggtttaagttcaatgtggtagtataaaagttga |
6532308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 36378164 - 36378098
Alignment:
| Q |
48 |
gtagtaaatgatcaaatgcttgtgtctttgcaatgtggatgttgtttagactaggattaagttcaat |
114 |
Q |
| |
|
||||||||||||||||| ||| | ||| | |||| ||||||||||||||||||||||||||||| |
|
|
| T |
36378164 |
gtagtaaatgatcaaatatgtgtatgtttatattgtgaatgttgtttagactaggattaagttcaat |
36378098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 25897990 - 25897905
Alignment:
| Q |
48 |
gtagtaaatgatcaaatgcttgtgtctttgcaatgtggatgttgtttagactaggattaagttcaatgcggtagtttaaaagttga |
133 |
Q |
| |
|
||||||||||||| |||| |||| | ||||||||| | ||||||||||| ||||| || | ||||||| ||||||||||||||||| |
|
|
| T |
25897990 |
gtagtaaatgatccaatgattgtctatttgcaatgagaatgttgtttaggctaggtttgacttcaatgaggtagtttaaaagttga |
25897905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 26172371 - 26172290
Alignment:
| Q |
49 |
tagtaaatgatcaaatgcttgtgtctttgcaatgtggatgttgtttagactaggattaagttcaatgcggtagtttaaaagttga |
133 |
Q |
| |
|
||||||||||||||||| |||| | |||||| | || |||||||| |||||| | |||||||||| |||||||||||| |||| |
|
|
| T |
26172371 |
tagtaaatgatcaaatgtttgtatgtttgcattctgaatgttgttgagactaag---aagttcaatgtggtagtttaaaacttga |
26172290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University