View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_high_20 (Length: 295)
Name: NF20486_high_20
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 41736300 - 41736571
Alignment:
| Q |
18 |
ttcaaaactttgaagagcatatatgctttactcgctaagttatggtatatggggtattttctctgattgtcaaacggttagagatttgcatctaaatcat |
117 |
Q |
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| T |
41736300 |
ttcaaaactttgaagagcatatatgctttactcgctaagttatggtatatggggtattttctctgattgtcaaatggttagagatttgcatctaaatcat |
41736399 |
T |
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| Q |
118 |
gttatttatgaaactaatttaagtcgtgct---aaaatgactcaaaatcgatttacttccccctttcatcttcaaactctttttcatgagatcctttctc |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41736400 |
gttatttatgaaactaatttaagtcgtgctgccaaaatgactcaaaatcgatttacttccacctttcatcttcaaactctttttcatgagatcctttctc |
41736499 |
T |
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| Q |
215 |
ttgtcaaccttttaggttggactattcaaagaaattacgtccattatgaagcaaactcttgtgttgatgatg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41736500 |
ttgtcaaccttttaggttggactattcaaagaaattacgtccattatgaagcaaactcttgtgttgatgatg |
41736571 |
T |
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