View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_high_24 (Length: 282)
Name: NF20486_high_24
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 26019526 - 26019272
Alignment:
| Q |
10 |
ataatactcgagttcatctaatagtatcatactaggtcgaaacagtaggctaattcaactcacggtttgatccatcattcatactgggaaaacttttagt |
109 |
Q |
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| T |
26019526 |
ataatactcgagttcatctaatagtatcatactaggtcgaaacagtaggctaattcaactcacggtttgatccatcatccatactgggaaaacttttagt |
26019427 |
T |
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| Q |
110 |
gcaagaaagagtgaaacatgacataaatgagcattagcaacaaacacagcggaataaatnnnnnnncataaacaacgtcttcaagacttagcttaagtgg |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
26019426 |
gcaagaaagagtgaaacatgacataaattagcattagcaacaaacacaacggaataaataaaaaaacataaacaacgtcttcaagacgtagcttaagtgg |
26019327 |
T |
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| Q |
210 |
ttgaactgagactaagaactaagagatccagggttcaaagttcagctagtaacac |
264 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26019326 |
ttgaactgagactaagaacgaagagatccagggttcaaagttcagctagtaacac |
26019272 |
T |
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