View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_high_28 (Length: 279)
Name: NF20486_high_28
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 26482012 - 26482285
Alignment:
| Q |
5 |
ataataaggaagagtaaaatataacaacgatgattgtatactattttaattctaactaatagtaatttgttaatgtcctacaccaaaatcagatatttta |
104 |
Q |
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| T |
26482012 |
ataataaggaagagtaaaatataacaacgatcattgtatactatttcaattctaactaatagtaatttgttaatgtcctacaccaaaatcagatatttta |
26482111 |
T |
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| Q |
105 |
gatgctttcac--gaaaaccacataatagcagtttctgtgttctttcacacgtttggtat-ccacaaacaaaacttttaatggaatatagaataatggat |
201 |
Q |
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| T |
26482112 |
gatgccttcacaggaaaaccacataatagcagtttctgttttctttcacacgtttggtatcccacaaaccaaacttttaatagaatatagaataatggat |
26482211 |
T |
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| Q |
202 |
attccaaaaaccaattgaagaaatgag-----ttata---taactaaccaaagaggcaaagagttatagatatt |
267 |
Q |
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|||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
26482212 |
attccacaaaccaattgaagaaatgagcaagcttatatgttaactaaccaaagaggcaaagagttatagatatt |
26482285 |
T |
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