View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20486_high_34 (Length: 241)
Name: NF20486_high_34
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 9366573 - 9366407
Alignment:
| Q |
53 |
taaataagagtttataaagagatacatatatcaacttataatttgattttgtaaggttgtattggatccaaccaaaaacagtcttttgttattgatcttt |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
9366573 |
taaataagagtttataaagagatacatatatcaacttataatttgattttgtaaggttgtattggatccaaccaaaatacgtgttttgttattgatcttt |
9366474 |
T |
|
| Q |
153 |
tttgttttgttgctcctatctttacactgtacattaaaggtattggtgtaagtgttttaatcgaactcga |
222 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
9366473 |
tttgttttgttgctcctatttttacactgtacattaaa-gtattggtgtaa--gttttaatcgaactcga |
9366407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University