View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20486_high_4 (Length: 535)
Name: NF20486_high_4
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 35 - 519
Target Start/End: Original strand, 34523947 - 34524431
Alignment:
| Q |
35 |
ttttataaatagagacactttctagcagatattgtgatgttgttacagagttgtggcaagagtttatcttattatcctacaatgcctccaccagatgcat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34523947 |
ttttataaatagagacactttctagcagatattgtgatgttgttaccgagttgtggcaagagtttatcttattatcctacaatgcctccaccagatgcat |
34524046 |
T |
|
| Q |
135 |
cttaaatcttaatgtactaaacattgacatctgataaattgaattttgacatgatcaacgattgtatgtaggatttacttccacgttaagataaaacata |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34524047 |
cttaaatcttaatgtactaaacattgatatctgataaattgaattttgacatgatcaacgattgtatgtaggatttacttccacgttaagataaaacata |
34524146 |
T |
|
| Q |
235 |
tttgtgatatgacattccatattcagccaacttagatggtgatgcagtcgatgatgtacaaactcacgaatttttcaacacaattactacttcggaactt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
34524147 |
tttgtgatatgacattccatattcagccaacttagatggtgatgcagtcgatgatgtacaaactcacgaattttgcaacacaactactacttcggaactt |
34524246 |
T |
|
| Q |
335 |
cgaaagcacaaggtgaaattggaagttggagtgtcactgattgccactttattagagaaaatattatttatagcatcattaaaacctcttttgtgatctc |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34524247 |
cgaaagcacaaggtgaaattggaagttggagtgtcactgattgccactttattagagaaaatattatttatagcatcattaaaacctcttttgtgatctc |
34524346 |
T |
|
| Q |
435 |
aaatgatcagttaactagttaactgatatcttaactaaatctttatgaagacctcgaatggattatgcgagaatgaacaaaattt |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34524347 |
aaatgatcagttaactagttaactgatatcttaactaaatctttatggagacctcgaatggattatgcgagaatgaacaaaattt |
34524431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University