View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_high_5 (Length: 520)
Name: NF20486_high_5
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 10502220 - 10502712
Alignment:
| Q |
1 |
tgttttcaatttgtgttcttggagcaggactaaagcacagtaccaaagcatgttgtggtcatggagggggagattacaactttgaccctaaagcattgtg |
100 |
Q |
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| T |
10502220 |
tgttttcaatttgtgttcttggagcaggactaaagcacagtaccaaagcatgttgtggtcatggagggggagattacaactttgaccctaaagcattgtg |
10502319 |
T |
|
| Q |
101 |
tggcaatatgcttgcaagtgcatgtgaagacccccaaaagtatgtgagttgggatggcattcatttcacagaagctgctaacaagattatagctatggcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10502320 |
tggcaatatgcttgcaagtgcatgtgaagacccccaaaactatgtgagttgggatggcattcatttcacagaagctgctaacaagattatagctatggcc |
10502419 |
T |
|
| Q |
201 |
attctcaatggctctctaagtgatcccccatttcttcttcataaactatgtgatcttcaacctcttgattgatcaattgcttataaaggtttatgcttat |
300 |
Q |
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| T |
10502420 |
attctcaatggctctctaagtgatcccccatttcttcttcataaactatgtgatcttcaacctattgattgatcaattgcttataaaggtttatgcttat |
10502519 |
T |
|
| Q |
301 |
accttattacaataatgagttttataaattctaagctatcaagatgtgtaaaataatatgtaagatatgtcgaactttggctttgtatgatgtatgatga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10502520 |
accttattacaataatgagttttataaattctaagctatcaagatg------------tgtaagatatgtcgaactttgcttttgtatgatgtatgatga |
10502607 |
T |
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| Q |
401 |
ttttggaaaattgttgatcattattatttacatactttatgaagaaccaattctacgaaatgatgaaaatagaagactaaatctgtaattaagccaaact |
500 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10502608 |
ttttggaaaattgttgatcattattatttatatactttatgaagaatcaattctacgaaatgatgaaaatagaagactaaaattgtaattaagccaaact |
10502707 |
T |
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