View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_11 (Length: 386)
Name: NF20486_low_11
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 14221379 - 14221028
Alignment:
| Q |
16 |
atgaagtggtctgcctcactgctttggaaaaatgtatgtttcacaaaatcaatatgatcaattctatattgatttgaattccggagaagagacagaacga |
115 |
Q |
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| T |
14221379 |
atgaagtggtctgcctcactgctttggaaaaatgtatgtttcacaaaatcaatatgatcaattctatattgatttgaattccggagaagagacagaacga |
14221280 |
T |
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| Q |
116 |
atgtgtgcattggatgtgtgtaacaatgattttggaactgaatttggcgagtggtgataaaagtttcacatgtcactcgtctttagtcccacatcgccag |
215 |
Q |
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| T |
14221279 |
atgtgtgcattggatgtgtgtaacaatgattttggaactgaatttggcgagtggtgacaaaagtttcacacgtcactcgtctttagtcccacatcgccag |
14221180 |
T |
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| Q |
216 |
tttgcagattttattgtggccttgataaatcataaccagtttgcaggtcttataggatgtggtagggtctgaataagagatttaacgttatttggtttgc |
315 |
Q |
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| T |
14221179 |
tttgcagattttattgtggccttgataaatcataaccagtttgcaggtcttataggatgtggtagggtctgaataagagatttagcgttatttggttcgc |
14221080 |
T |
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| Q |
316 |
atatatttgggttatttgcaagagtgatggataattcattgttggtttactg |
367 |
Q |
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| T |
14221079 |
atatatttgggttatttgcaacagtgatggatatttcattgttggtttactg |
14221028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 14229471 - 14229378
Alignment:
| Q |
119 |
tgtgcattggatgtgtgtaacaatgattttggaactgaatttggcgagtggtgataaaagtttcacatgtcactcgtctttagtcccacatcgc |
212 |
Q |
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| T |
14229471 |
tgtgcagtggatgtgtgtaacaatgattttggaactcaatttggcgagtggtgactaaactttcacaagtcactcatatttagtcccacatcgc |
14229378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 14226659 - 14226561
Alignment:
| Q |
116 |
atgtgtgcattggatgtgtgtaacaatgattttggaactgaatttggcgagtggtgataaaagtttcacatgtcactcgtctttagtcccacatcgcca |
214 |
Q |
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| T |
14226659 |
atgtgtgcagtggatgtgtataacaatgatttttgagctgaatttggcgagtggtgactaaagtttcaaaagtcactcataattagtcccacatcgcca |
14226561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 14225933 - 14225854
Alignment:
| Q |
234 |
gccttgataaatcataaccagtttgcaggtcttataggatgtggtagggtctgaata-agagatttaacgttatttggtt |
312 |
Q |
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| T |
14225933 |
gccttgataaatcttaaccagtttgcgggtctaataggctgtggtagggtctaaatagagagctttagtgttatttggtt |
14225854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 14226752 - 14226683
Alignment:
| Q |
43 |
aaaaatgtatgtttcacaaaatcaatatgatcaattctatattgatttgaattccggagaagagacagaa |
112 |
Q |
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| T |
14226752 |
aaaaatgtaagtttcacacaatcaatatgatcaactctgaattgatttgaattcaagagaagacacagaa |
14226683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 14223917 - 14223852
Alignment:
| Q |
144 |
attttggaactgaatttggcgagtggtgataaaagtttcacatgtcactcgtctttagtcccacat |
209 |
Q |
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| T |
14223917 |
attttgaaactgaatttggcgagtggtgactaaagtttcacaattcacttatatttagtcccacat |
14223852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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